GBrowse Details

Vigan.04G183400.01

Basic Information:
Name: Vigan.04G183400.01
Multiple alignment
Variant Information
Position: Chr04:26502959..26504651 (+ strand)
Length: 1693
Functional Information:
Description: Similar to Type 2 metallothionein. [Q75NH9, Phaseolus angularis]
GO: Molecular Function: metal ion binding (GO:0046872)
InterPro: Metallothionein, family 15, plant (IPR000347)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1628.96,6842.24,1170.67,1322.03,164. 99,4036.96,815.01,2070.72
Arabidopsis thaliana homolog: AT5G02380.1
Automatic updates:
Name: NM_001248577 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max metallothionein type 2 (MET2), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001248577 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max metallothionein type 2 (MET2), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:26502959..26503044 (+ strand)
Length: 86
Type: five_prime_UTR
Position: Chr04:26503045..26503109 (+ strand)
Length: 65
Type: CDS
Position: Chr04:26503764..26503938 (+ strand)
Length: 175
Type: CDS
Position: Chr04:26503939..26504651 (+ strand)
Length: 713
Type: three_prime_UTR

>Vigan.04G183400.01 class=Sequence position=Chr04:26502959..26504651 (+ strand)
GAACTTGTGT GTGATAATTG TTCTTGTGAC TTGTTCTTCG TCGTTATCTT CTTTTCTCCT GTGTTTGTTT TTTGTTACCT
GAGAAAATGT CTTGCTGCGG TGGTAACTGT GGATGCGGAA GCTCCTGCAA GTGCGGCAGT GGCTGCGGAG GGTGAGTGAG
GTTTTCGTGT CTTTGTTGTG TCACCCTTTC AAATATCGGT TTATTTTTTC TTTGTTGAGA GTTTTCTTCC TGGATTTTAA
TTTGCTTTTC GAGGACCCCT TTTGGTTGAA TTTCATGAAA GTTTACGCTT TTTTAATTTT CTTGCATGGG GATATTCTGA
TAATCTGAAC ATTTATTTTG CTTCTACAGA ATGTGTTGTA TTTTCTTTAC ACGGCAAAGT TTTTGGGGTG TTTTGATTTG
CTATCTGGGT AACCTTTTGT TGAATTTGTA TAGAAGTTTG TTATTTTTTT TTCTTACGTG GTTTTTGCAT GTTAAATTCC
GACCACTTTG ATGGTCTAAA GATTGCGGTG CTTCGATTTT GTTTGGTTTT TGAATACCCT TTGAGTTGAT CTGTTGTTAG
AATCTCCAGG AGGTTTTTAT ATCTGGGGAA ATGGTTTTGG ATGTCCTCAA ATATATTGAA TATGAATTCG CCTGATCATG
ATGGAAATGA ACCATATTAA TGTTTGTGCA CTGCTAAGAA GAGAGAAACG CAGTGCTTTC AAGTAAAAAA AAAAAATCAA
GAGAGGAGTT TTTACCATTT GTGTTGTCTA AAATTCCCTT AAACTTTTTT GTTTTCTAAT TTTCTGGTTT TTGATTGTTC
TGCAGCTGCA AGATGTACCC AGACTTGAGC TACACGGAGC AAACAACCAC TGAGACTTTG GTCATGGGAG TGGCACCCGT
GAAGGTTCAA TTCGAAGGTG CTGAAATGGG TGTTGCTGGT GAGAATGATG GCTGCAAGTG TGGATCAAAC TGCACATGCA
ACCCCTGCAC TTGCAAGTGA GCTTGAATAG CAAAAGCTTG AAGCAGAGAT GGACCTTAAT TACAATTAGC AGCAGGAATA
ATTACAATAA TTAACTATTA TCCGTAGTTA AAAACCTTAA AATTATGTAA GTCTGTGTGT CTGTTTTCGT TTTCTCTGGT
GTTAGGTCTG AACACCCTTT AGAATAAAGT GGTCATGTCT TGCCCTTGAA CAAGTTCAAG TGCTATGGAC TTGTGATGGG
ATTATCTAGC CATGGTTACT TTGGTTTGTT CTGTGTAAAG TTGGCTAATC AGAATTATCA GTCTCTGCTT ATAATATTAT
ATTACTGGTG TGATTTTGTT AAGAATTTTA TACAATAAAG GATAACAATC AGATAATTAC AAAATCAATA CGAATATTAG
TTGGTTCAGT GATGAAAGTG TGTGAATTTG AAAACTAAAG GAAGTTGATG TGAAAAAAAG AGGATCATTT CTCTCCATCT
GTTTGGAAGG TATCATATGA TATTACGATG GCATTTTTCC AAACACATGG TGAGGTCGGT GCTGGTCCCC TTCTACTTGA
AGTCTGAAGA CTGAAAGTGA GTTCCATGTG CGTGTTTCTG AAACCAAGGC AGATTACTAT TGCGATAGTT ACAGCTACTG
TGGCTCTTTT CGAACAATCT TAATATTTTC AACTTTTTAA TTAACTTGAA ACTTAAAAAA TGCATAAAAT TGTAATTAAA
CTAATAAAGG AAA

>Vigan.04G183400.01
GAACTTGTGT GTGATAATTG TTCTTGTGAC TTGTTCTTCG TCGTTATCTT CTTTTCTCCT GTGTTTGTTT TTTGTTACCT
GAGAAAATGT CTTGCTGCGG TGGTAACTGT GGATGCGGAA GCTCCTGCAA GTGCGGCAGT GGCTGCGGAG GCTGCAAGAT
GTACCCAGAC TTGAGCTACA CGGAGCAAAC AACCACTGAG ACTTTGGTCA TGGGAGTGGC ACCCGTGAAG GTTCAATTCG
AAGGTGCTGA AATGGGTGTT GCTGGTGAGA ATGATGGCTG CAAGTGTGGA TCAAACTGCA CATGCAACCC CTGCACTTGC
AAGTGAGCTT GAATAGCAAA AGCTTGAAGC AGAGATGGAC CTTAATTACA ATTAGCAGCA GGAATAATTA CAATAATTAA
CTATTATCCG TAGTTAAAAA CCTTAAAATT ATGTAAGTCT GTGTGTCTGT TTTCGTTTTC TCTGGTGTTA GGTCTGAACA
CCCTTTAGAA TAAAGTGGTC ATGTCTTGCC CTTGAACAAG TTCAAGTGCT ATGGACTTGT GATGGGATTA TCTAGCCATG
GTTACTTTGG TTTGTTCTGT GTAAAGTTGG CTAATCAGAA TTATCAGTCT CTGCTTATAA TATTATATTA CTGGTGTGAT
TTTGTTAAGA ATTTTATACA ATAAAGGATA ACAATCAGAT AATTACAAAA TCAATACGAA TATTAGTTGG TTCAGTGATG
AAAGTGTGTG AATTTGAAAA CTAAAGGAAG TTGATGTGAA AAAAAGAGGA TCATTTCTCT CCATCTGTTT GGAAGGTATC
ATATGATATT ACGATGGCAT TTTTCCAAAC ACATGGTGAG GTCGGTGCTG GTCCCCTTCT ACTTGAAGTC TGAAGACTGA
AAGTGAGTTC CATGTGCGTG TTTCTGAAAC CAAGGCAGAT TACTATTGCG ATAGTTACAG CTACTGTGGC TCTTTTCGAA
CAATCTTAAT ATTTTCAACT TTTTAATTAA CTTGAAACTT AAAAAATGCA TAAAATTGTA ATTAAACTAA TAAAGGAAA

>Vigan.04G183400.01
ATGTCTTGCT GCGGTGGTAA CTGTGGATGC GGAAGCTCCT GCAAGTGCGG CAGTGGCTGC GGAGGCTGCA AGATGTACCC
AGACTTGAGC TACACGGAGC AAACAACCAC TGAGACTTTG GTCATGGGAG TGGCACCCGT GAAGGTTCAA TTCGAAGGTG
CTGAAATGGG TGTTGCTGGT GAGAATGATG GCTGCAAGTG TGGATCAAAC TGCACATGCA ACCCCTGCAC TTGCAAGTGA

>Vigan.04G183400.01
MSCCGGNCGC GSSCKCGSGC GGCKMYPDLS YTEQTTTETL VMGVAPVKVQ FEGAEMGVAG ENDGCKCGSN CTCNPCTCK*