GBrowse Details

Vigan.04G155300.01

Basic Information:
Name: Vigan.04G155300.01
Multiple alignment
Variant Information
Position: Chr04:21296591..21299916 (- strand)
Length: 3326
Functional Information:
Description: Similar to RING/FYVE/PHD zinc finger superfamily protein. [XP_007026837.1, Theobroma cacao]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-CH-type (IPR011016)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.59,2.25,3.86,3.95,3.46,4.02,1.48,4 .26
Automatic updates:
Name: NM_001254506 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100808666 (LOC100808666), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:21296591..21297023 (- strand)
Length: 433
Type: three_prime_UTR
Position: Chr04:21297024..21297264 (- strand)
Length: 241
Type: CDS
Position: Chr04:21299029..21299480 (- strand)
Length: 452
Type: CDS
Position: Chr04:21299481..21299916 (- strand)
Length: 436
Type: five_prime_UTR

>Vigan.04G155300.01 class=Sequence position=Chr04:21296591..21299916 (- strand)
CACACACTCC TTTATCAATG CAATCTCGTG GGAGTTTTTC TGTGCTCCCA CAGCACCTTT GTTTGTGTTG CTGTTGGCAG
GGTCACTGTC TCTGCCTTCT TCCACCGCAT CAGTACTCTT CGTCCCATCA TTCACACCCT TTCTCTCTCC ATTCACAGTG
AAAAAAAAGG ATGCAAATTT CCTCACCCCC TTCCAAAACT TGAAACTTTT GGAACTTTGC ATTGATGGGG TTAAAGGGAA
TGCTCTCCTA ATCCAGTTTC TCAATTCTTT AACCCCAAGT TCCATTTTTT TTTCTTATAT CATTCTTTTA TATGTGTACT
CCCTACTTTC CAAATTTTGA GGCATTTCAT GTTTTCTGTC TCAAGCTCTG AGAAAACGTT ATTGTTGTTG TTGTTATTAG
GCTGTTTGTT TGTTTTGGTC TCTTGTCGGT CGAAAAATGG CCACCTTGCA GATGTCCCAT GTTGATTTGG AGCAAGGAAA
CCATCGCCGT TCGGTTGTTG GTAGTGATGC GAGCGTTGAA GGGAGCTTAT GCTTCTCTGA TGCTGATGAT GGGTCTTGCT
ACTCTCGTTT CTACTCAACA AATGGTGGTT CATATGATGA TTACAGCTTT GATTGTGTTT CTGATCCTGA GGCTGGGGGT
GTTCCTCATT CTGGGAGAGC TTCTTCTGTT TCTGAGTGCT CTGTGGAGTT GGAAACTAGA ACTGGGGTTC CTGAGATCAA
GGTGCATTTG GCTAAAGTGG AGAAGGATTG TAGGATTTGT CACATGGGTT TGGTGAGCGA TAGCCATGAG TCTGGTGCCC
CCATAGAATT GGGTTGTTCC TGTAAGGATG ATTTAGCTGC TGCTCACAAG CACTGTGCTG AGGCCTGGTT CAAGATTAAG
GGAAATAGGT GAATGTGAAA CTGAAACCCT TCACTTTCCA TGCTATTTTT GTTACATGGA TTTGATATGT ATGCTAAATC
TTGGGTTTCT TTTTTAGAAA TTTTGGATAC CCTTTTGTTG ATTCCTTGCA TTGATAACAG AAACTTGCCA ATATCTGTTA
TGTATTGGTG CTGTTCGCTG TTTGAAAGCT TTGCAGTATC AGTCACAGCT TTTTGTTTGC TTGAAGGGTT TGATTTTAGT
GACTAGAGTG TGGGAAAGTA ATTGAAGTGT ATAACGTGGA ATTTGTGTTG TGAAATTATT TAATTCAGAC TGTAAGGCTG
AGGAAGATGG TGGGGAAAGT ATTTGGAAAC AAATTTTAGA AGGTGTAAAG AATTAAATTG TGGGGTGAGG GAAGGCCGAA
ATAATTCGTC CGAGAAAGGG GAAAGATATA CAAGATTAAA TTATTTAATG AAGATTATGG AAAAAGAAAG GCGTAAAGCA
TCAACTAGTC CAACTGATTC GCTGTCTTGC CTACCCAAGC ACAGTGGGAT TCTTTGCTGC TTTGTCCCTT TTCTAAAATT
TAGGAATCTG TATATTACTC TTCTTTCTTA TTCTTTTTAT CTCTTTCAAA TGGATATTGG ACCCCCTCTG ACTCCTGTTC
ATGGATTCAA TTATCTTGGT AGATGCTACT TGCTTGCAGA AGTGCCACCT AGAATATTTT AATCTGCAAG TTACTGGTCC
CATATAATCT GTTCATGTAT GATGTATGAT GTCAACTTTT AGATTGCCTA ATAGTTTTGA ATTGTGATTA CCATAGGCTA
CTGAATGTTG GTACAAATGT ACAGATCCCT TGTTGCATTT GTTGAGGTAA ATAATTTCAT ACTTCATTTT CTGGTTGCAG
AATCGCTTGT AGAAGATGGA ACAGTTAAAA CTTTTATTCA GTGGTAGGGT GCTAGTTCTT AATTTTAACG GCAGTCCCTA
AATGCTAAGT GAAAGTAAGG AAACTAGTTA TTTGTGCTTT TATACATGGT GGGGCATGTT TTGTTGATGG ACTGGTGATC
GTCCATGCTT CATTTTGAAT TTAAAAGCAA ATTATAGGGA CCAGTTATTG AGGAAGGACC TATTGTTATA ATTGATTCAG
ACGCAAATCC ATCCAAAAGC ATTACTTCAT GGCGACAGAA TTTGAATCTT TTCAATTTTG GAATCATCTT TATCTGATGT
ATTGATGCTT TGATTGGTGG CAAATATTTA TGATATATTC TTTACCTTAG TTTTGATACT TTGAAAACGT GACATGGTTT
GTCAAAGACA TGTTTGAACT TGTATAAAGG CAATTGGACG CTTGTATATA GAGATTTAAG TTGGGCTAAC TAGAGCTGGA
AAACTATGAA ATCATTCATT ATTCTGATTG GTTGACTCTT CTGCTGTGAC AACTTAGTGT AAACAGTAAG GTTGGTTGAT
GATTATCTTT GTTAAATTTA AATGAAGTTT CATTTATTAC TAGTTTATTA CGTCTTGTGT ATGAGCCGAA AATATCATGG
TTTTATGGTA TGATATTTTC ATATCTGGCA TATGAACAGC ATGGCCTTTT GCATTTGCAA GCCTGCTTGT TTATTTGAAG
CATCCCGTTT TGAAGTGGCT AGCAATTAAT GTTGCTTTTG ATGTATATGA TGTGAAGTTT CTACTGAATT TATAACAATG
TTCGTCAGAA AATCTGGTTG TTTACTGCAA AAATAGCAAT TCGTTTTAAG TTGTGTTTTT CTGATAATTT TTGTTTGCTT
AAACTTTAAC AGGACTTGTG AAATCTGTCA TTCTGTTGCT CGGAATGTTT ATGGAGGAAA CGAGGATTCG ACAGAGCATG
TTAGCGACGG TAACAATGGT ACTACAGCAG CAGCCACAGT CTCCACAACT GCTCCTTTTA CAGAACCTCG TAGATTTTGG
CATGGCCATC GCTTCCTCAA TTTCTTGCTT GCTTGTATGG TTTTTGCTTT TGTGATATCA TGGCTTTTCC ACTTCAATGT
GACATCATCG TAGGATTTCT TCAGGCAGTT TTATTTACAA TTTGAAGTTG AGTAGGGAGC AAACAAGAGA GATGAAAAGA
AAAAAAGAGA AGGAAAAAAG GAAACCCTTC TCGAAGATCA TGGAAAACAA TTTCTTAGAG AAAGAATCCT TGTAGAATTT
GAGACATTGT TGGGTTTATA AAGATAGCTG CATAACTTCC TTTCCATGCA AATAGACATT TTCTGTTGTG CATTCGCCAT
AGGCTCTCTT GTTCTGTCTT TCAGAGTCAA TGCAATTTGT GAACAAATAC TAGAATGTTT ATTCAAATGT AAATTACATA
TTTATATTGT ATTGTTACTT CATTGTCATT TTGTACGGGG TGATTTCTTA GTTCACTTGT AAGATTTGCT GACATTGCTT
CTCTAATCAA TAGTAGAAGA AACTACATCC ATGTTTTCCA CTTCTT

>Vigan.04G155300.01
CACACACTCC TTTATCAATG CAATCTCGTG GGAGTTTTTC TGTGCTCCCA CAGCACCTTT GTTTGTGTTG CTGTTGGCAG
GGTCACTGTC TCTGCCTTCT TCCACCGCAT CAGTACTCTT CGTCCCATCA TTCACACCCT TTCTCTCTCC ATTCACAGTG
AAAAAAAAGG ATGCAAATTT CCTCACCCCC TTCCAAAACT TGAAACTTTT GGAACTTTGC ATTGATGGGG TTAAAGGGAA
TGCTCTCCTA ATCCAGTTTC TCAATTCTTT AACCCCAAGT TCCATTTTTT TTTCTTATAT CATTCTTTTA TATGTGTACT
CCCTACTTTC CAAATTTTGA GGCATTTCAT GTTTTCTGTC TCAAGCTCTG AGAAAACGTT ATTGTTGTTG TTGTTATTAG
GCTGTTTGTT TGTTTTGGTC TCTTGTCGGT CGAAAAATGG CCACCTTGCA GATGTCCCAT GTTGATTTGG AGCAAGGAAA
CCATCGCCGT TCGGTTGTTG GTAGTGATGC GAGCGTTGAA GGGAGCTTAT GCTTCTCTGA TGCTGATGAT GGGTCTTGCT
ACTCTCGTTT CTACTCAACA AATGGTGGTT CATATGATGA TTACAGCTTT GATTGTGTTT CTGATCCTGA GGCTGGGGGT
GTTCCTCATT CTGGGAGAGC TTCTTCTGTT TCTGAGTGCT CTGTGGAGTT GGAAACTAGA ACTGGGGTTC CTGAGATCAA
GGTGCATTTG GCTAAAGTGG AGAAGGATTG TAGGATTTGT CACATGGGTT TGGTGAGCGA TAGCCATGAG TCTGGTGCCC
CCATAGAATT GGGTTGTTCC TGTAAGGATG ATTTAGCTGC TGCTCACAAG CACTGTGCTG AGGCCTGGTT CAAGATTAAG
GGAAATAGGA CTTGTGAAAT CTGTCATTCT GTTGCTCGGA ATGTTTATGG AGGAAACGAG GATTCGACAG AGCATGTTAG
CGACGGTAAC AATGGTACTA CAGCAGCAGC CACAGTCTCC ACAACTGCTC CTTTTACAGA ACCTCGTAGA TTTTGGCATG
GCCATCGCTT CCTCAATTTC TTGCTTGCTT GTATGGTTTT TGCTTTTGTG ATATCATGGC TTTTCCACTT CAATGTGACA
TCATCGTAGG ATTTCTTCAG GCAGTTTTAT TTACAATTTG AAGTTGAGTA GGGAGCAAAC AAGAGAGATG AAAAGAAAAA
AAGAGAAGGA AAAAAGGAAA CCCTTCTCGA AGATCATGGA AAACAATTTC TTAGAGAAAG AATCCTTGTA GAATTTGAGA
CATTGTTGGG TTTATAAAGA TAGCTGCATA ACTTCCTTTC CATGCAAATA GACATTTTCT GTTGTGCATT CGCCATAGGC
TCTCTTGTTC TGTCTTTCAG AGTCAATGCA ATTTGTGAAC AAATACTAGA ATGTTTATTC AAATGTAAAT TACATATTTA
TATTGTATTG TTACTTCATT GTCATTTTGT ACGGGGTGAT TTCTTAGTTC ACTTGTAAGA TTTGCTGACA TTGCTTCTCT
AATCAATAGT AGAAGAAACT ACATCCATGT TTTCCACTTC TT

>Vigan.04G155300.01
ATGGCCACCT TGCAGATGTC CCATGTTGAT TTGGAGCAAG GAAACCATCG CCGTTCGGTT GTTGGTAGTG ATGCGAGCGT
TGAAGGGAGC TTATGCTTCT CTGATGCTGA TGATGGGTCT TGCTACTCTC GTTTCTACTC AACAAATGGT GGTTCATATG
ATGATTACAG CTTTGATTGT GTTTCTGATC CTGAGGCTGG GGGTGTTCCT CATTCTGGGA GAGCTTCTTC TGTTTCTGAG
TGCTCTGTGG AGTTGGAAAC TAGAACTGGG GTTCCTGAGA TCAAGGTGCA TTTGGCTAAA GTGGAGAAGG ATTGTAGGAT
TTGTCACATG GGTTTGGTGA GCGATAGCCA TGAGTCTGGT GCCCCCATAG AATTGGGTTG TTCCTGTAAG GATGATTTAG
CTGCTGCTCA CAAGCACTGT GCTGAGGCCT GGTTCAAGAT TAAGGGAAAT AGGACTTGTG AAATCTGTCA TTCTGTTGCT
CGGAATGTTT ATGGAGGAAA CGAGGATTCG ACAGAGCATG TTAGCGACGG TAACAATGGT ACTACAGCAG CAGCCACAGT
CTCCACAACT GCTCCTTTTA CAGAACCTCG TAGATTTTGG CATGGCCATC GCTTCCTCAA TTTCTTGCTT GCTTGTATGG
TTTTTGCTTT TGTGATATCA TGGCTTTTCC ACTTCAATGT GACATCATCG TAG

>Vigan.04G155300.01
MATLQMSHVD LEQGNHRRSV VGSDASVEGS LCFSDADDGS CYSRFYSTNG GSYDDYSFDC VSDPEAGGVP HSGRASSVSE
CSVELETRTG VPEIKVHLAK VEKDCRICHM GLVSDSHESG APIELGCSCK DDLAAAHKHC AEAWFKIKGN RTCEICHSVA
RNVYGGNEDS TEHVSDGNNG TTAAATVSTT APFTEPRRFW HGHRFLNFLL ACMVFAFVIS WLFHFNVTSS *