GBrowse Details

Vigan.04G153900.01

Basic Information:
Name: Vigan.04G153900.01
Multiple alignment
Variant Information
Position: Chr04:21031494..21032859 (+ strand)
Length: 1366
Functional Information:
Description: Similar to Uncharacterized protein. [G7KZ23, Medicago truncatula]
InterPro: Glyoxalase-like domain (IPR025870)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.08,8.21,126.52,26.40,6.60,123.05,18.72,20.42
Arabidopsis thaliana homolog: AT5G48480.1
Automatic updates:
Name: NM_001248544 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306467 (LOC100306467), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:21031494..21031585 (+ strand)
Length: 92
Type: five_prime_UTR
Position: Chr04:21031586..21031857 (+ strand)
Length: 272
Type: CDS
Position: Chr04:21032298..21032517 (+ strand)
Length: 220
Type: CDS
Position: Chr04:21032518..21032859 (+ strand)
Length: 342
Type: three_prime_UTR

>Vigan.04G153900.01 class=Sequence position=Chr04:21031494..21032859 (+ strand)
CACGCTCATC TCATTTTCTT CTGCAGTAAC TCTTCTTTCT CTTTCTTAGG GTTAGGGTTT TCCCTCTTCT TCTCCCTTCA
TTCTTTGTCC CAATGGCTCA GCAAGACGCA CAAAATGGCG TGACGGAGAA TGCCGCTGCT GCGGTGTCTT TCCTTGCCGT
GAAGCCGCAG CTTCTGGTCG AAGCTCCTAA AGCAAACGAC GCTGTTTCCT TCTACAAGGC TGCGTTTGAT GCAGAGGAAG
TTGCTCGTGC GCTCAACCCC AAGCGCAAAG CTGACCACGA GCTTCCTCTC ATACTCTCGG CTGAGCTCAA AATTGCTGGC
TCCACCATTA TCGTCGCTGA CCTCGTCGAT GACTCTGCTT CCCCGTTAGT TTTCTCTGTT TATGTTCATA GCTTATATTT
CATAGATCTA TCAATATTGA ACATGTTTTG ATGTTTTTGC TTCTGATGTT CTAGTTGTTG GTACTGTTTT TTGATCGTAT
GACTTTTATT TGTGTTAATT TAAGTTTGGT GTTTGTTTTT TATTCGTCCG TGCATTGGTC CCTAATTTTA AATTAATTTT
TGGCTTGTAT GCACTCGATC TATATTTAAT AGGAATTATA TTTTTCGAGA ATCGTGATTT CCTTTTTAGT CTGTTTTGTT
CATCCATTGT TCACGTTTTG TTCTCTAGTG TCTTATCTAT TGTTTTGTGG TATTAGTTCC ACACTTTCAG TAACTTTCGT
TTTCTTTTGC AAACGTGGTC TTCACTCGTT AGTTCATAAT ATATTTCAAT GACTGAAGGA AGTTTCATTT GATTTCGTTG
TCAGCTTGAA GGCGGGTGGA AACGGTGTCG TTTTGTGTTT GGAGACCGAG GACGTTCAGG GGGCCGTAGC TAAAGCGGTG
AGTGCTGGGG CTGTTGTGGA GGAGGAAGTG GCCGAAATTG AAGGCGCGTG CTGCGGTGGG CGCGTGGTGA AGGTTAAGGA
CCCTTATGGT TTTGTCTGGC TCTTGTGCTC TCCTGGGAAG AAAAGTGTTG ACGTGGAAGC TTAATGTGTG TTAGATCAGT
TTGTTTCTGA CAGTTGGGAT TTTCAGTTTG TTTTAGTTGT AGCAGTTATT AGGGTAATGA TCAGCTTGTC TAGAGAATGT
CTTTAGGATT TGAGTGAGTT ATTAATCTAA TGGTTGGGAC TCTATATGGA GTATTTTGAA ACTCTGGTAA TTTCTTCTTA
ATGTTAATGA TCAAAGCTGA CCCAGAAAAA AGTAATTGGC TTATTGATCT TGTTTCAGTT TCCTTTAGTA TATGTTGATG
TGTTTTCTTA GTTAATTTCT TCTATAGGCA ATGTGTTGAT GTTAAAATAT TTTGGCTAGC TATAGCCATT AATTCTCTTA
AAGTCT

>Vigan.04G153900.01
CACGCTCATC TCATTTTCTT CTGCAGTAAC TCTTCTTTCT CTTTCTTAGG GTTAGGGTTT TCCCTCTTCT TCTCCCTTCA
TTCTTTGTCC CAATGGCTCA GCAAGACGCA CAAAATGGCG TGACGGAGAA TGCCGCTGCT GCGGTGTCTT TCCTTGCCGT
GAAGCCGCAG CTTCTGGTCG AAGCTCCTAA AGCAAACGAC GCTGTTTCCT TCTACAAGGC TGCGTTTGAT GCAGAGGAAG
TTGCTCGTGC GCTCAACCCC AAGCGCAAAG CTGACCACGA GCTTCCTCTC ATACTCTCGG CTGAGCTCAA AATTGCTGGC
TCCACCATTA TCGTCGCTGA CCTCGTCGAT GACTCTGCTT CCCCCTTGAA GGCGGGTGGA AACGGTGTCG TTTTGTGTTT
GGAGACCGAG GACGTTCAGG GGGCCGTAGC TAAAGCGGTG AGTGCTGGGG CTGTTGTGGA GGAGGAAGTG GCCGAAATTG
AAGGCGCGTG CTGCGGTGGG CGCGTGGTGA AGGTTAAGGA CCCTTATGGT TTTGTCTGGC TCTTGTGCTC TCCTGGGAAG
AAAAGTGTTG ACGTGGAAGC TTAATGTGTG TTAGATCAGT TTGTTTCTGA CAGTTGGGAT TTTCAGTTTG TTTTAGTTGT
AGCAGTTATT AGGGTAATGA TCAGCTTGTC TAGAGAATGT CTTTAGGATT TGAGTGAGTT ATTAATCTAA TGGTTGGGAC
TCTATATGGA GTATTTTGAA ACTCTGGTAA TTTCTTCTTA ATGTTAATGA TCAAAGCTGA CCCAGAAAAA AGTAATTGGC
TTATTGATCT TGTTTCAGTT TCCTTTAGTA TATGTTGATG TGTTTTCTTA GTTAATTTCT TCTATAGGCA ATGTGTTGAT
GTTAAAATAT TTTGGCTAGC TATAGCCATT AATTCTCTTA AAGTCT

>Vigan.04G153900.01
ATGGCTCAGC AAGACGCACA AAATGGCGTG ACGGAGAATG CCGCTGCTGC GGTGTCTTTC CTTGCCGTGA AGCCGCAGCT
TCTGGTCGAA GCTCCTAAAG CAAACGACGC TGTTTCCTTC TACAAGGCTG CGTTTGATGC AGAGGAAGTT GCTCGTGCGC
TCAACCCCAA GCGCAAAGCT GACCACGAGC TTCCTCTCAT ACTCTCGGCT GAGCTCAAAA TTGCTGGCTC CACCATTATC
GTCGCTGACC TCGTCGATGA CTCTGCTTCC CCCTTGAAGG CGGGTGGAAA CGGTGTCGTT TTGTGTTTGG AGACCGAGGA
CGTTCAGGGG GCCGTAGCTA AAGCGGTGAG TGCTGGGGCT GTTGTGGAGG AGGAAGTGGC CGAAATTGAA GGCGCGTGCT
GCGGTGGGCG CGTGGTGAAG GTTAAGGACC CTTATGGTTT TGTCTGGCTC TTGTGCTCTC CTGGGAAGAA AAGTGTTGAC
GTGGAAGCTT AA

>Vigan.04G153900.01
MAQQDAQNGV TENAAAAVSF LAVKPQLLVE APKANDAVSF YKAAFDAEEV ARALNPKRKA DHELPLILSA ELKIAGSTII
VADLVDDSAS PLKAGGNGVV LCLETEDVQG AVAKAVSAGA VVEEEVAEIE GACCGGRVVK VKDPYGFVWL LCSPGKKSVD
VEA*