GBrowse Details

Vigan.04G140300.01

Basic Information:
Name: Vigan.04G140300.01
Multiple alignment
Variant Information
Position: Chr04:17494186..17496256 (+ strand)
Length: 2071
Functional Information:
Description: Similar to mitochondrial inner membrane protease subunit 2-like isoform X3. [XP_004511437.1, Cicer arietinum]
GO: Biological Process: proteolysis (GO:0006508)
Cellular Component: membrane (GO:0016020)
Molecular Function: serine-type peptidase activity (GO:0008236)
InterPro: Peptidase S26A, signal peptidase I (IPR000223)
Peptidase S24/S26A/S26B/S26C (IPR015927)
Peptidase S24/S26A/S26B (IPR019759)
Peptidase S24/S26, beta-ribbon domain (IPR028360)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.75,6.12,6.58,4.41,11.70,13.74,10.5 0,5.25
Arabidopsis thaliana homolog: AT3G08980.1
Automatic updates:
Name: NM_001249028 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527429 (LOC100527429), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249028 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mitochondrial inner membrane protease subunit 2-like (LOC100527429), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:17494186..17494202 (+ strand)
Length: 17
Type: five_prime_UTR
Position: Chr04:17494203..17494368 (+ strand)
Length: 166
Type: CDS
Position: Chr04:17494454..17494526 (+ strand)
Length: 73
Type: CDS
Position: Chr04:17494924..17495089 (+ strand)
Length: 166
Type: CDS
Position: Chr04:17495773..17495883 (+ strand)
Length: 111
Type: CDS
Position: Chr04:17495884..17496256 (+ strand)
Length: 373
Type: three_prime_UTR

>Vigan.04G140300.01 class=Sequence position=Chr04:17494186..17496256 (+ strand)
GATGTGCACC TAAACACATG GGGTCAAGCA GTTTTCTATG GAACTGTACT AAAAAATTTG TCACAGCTGC TGTCATCACT
GTGACTGTGT CTGATCGTTT TGCGACAGTT GTTCCTGTTC GAGGTGGCTC TATGTCTCCC ACATTAAATC CTAAAACTGG
TTCTCTGATG GAAGATGTTT TTGGTATTTT TCTCGCTGAA GGAGTTCATA AGAAAATATT ACTTTTACAT TTGCAGATTT
TGTTGTTTGA CCATTAATTA CACTGCAGAT GACTATGTTT TTGTTGAGAA ATTTTGCCTT TTGGGGTACG AATTTTCAAA
TGGCGATGTG GTGGTCTTCC GGTACTGTTT TTTTGTCCGT CCTTTCCAAG TATTGTATTC TTAAAATTAT ATGTGCATTT
ATATGCCGTA TCTTCCTTTC TTTTGTAAGA TGTCTGGGAG ATAATTTAGC AAGTGACTGT AGAGTCTTGT GAATTATCAT
GTCTTTGGAT TAATATTGCA TCACAGTCGG AATTGTTGGC AGTCGTTGAT TTACACTGTA TACTACCTGG CTTTTTAACA
TTAATAGATT ATTGTGATCT AACCTATATT CATCGGTTGG CTCTTGCTAA AATGGATGCT AATTTTAAGA TCTTGATCTA
TATTATTAAG ACAATTTATG TTTCATTAGA ATCTATATTT GATACCTATT TGTTTTTTTT TTTTTTGAGT TTTAATTGGC
ATTGTGAAAC TTTTGTAGCT CCCCAACGAA TCACAAGGAG ACACACATAA AAAGAATAGC TGCATTACCT GGTGAATGGT
ATGGCACTCA TCATAACAAC GATGTGATTC GGATCCCATT AGGACATTGT TGGGTTGAGG GAGACAACTC AGCCTCTAGC
ATTGATTCAA AGTCATTTGG ACCGGTAAGT TGCTATTATC ACTGAGTTTC TGGCATGTTA CTGTTATGAT GTCCAAAATG
AAGCAAGAAA AATAAGTCTC GTGTAAAGGG TCAATGCTTG AAATTAGAGA ATACAAAATT GAGGAGGACT TCTAAATCGT
ACTTAGTTTA ATATTACATT GTGAGTAAAA CCTTAAGATT TCTGTTAACA GATGAGCAGA AGAAATTATG GCTCATAATA
ATTACGGGGT AAAGCCTGAC TGGCATGGCT TCTTTTGCTA GAAAAAGAAT GAAGGTTTAT ATTATGTATC AAATGCAATT
GTGCTCACTT ATTTCAAAGC ATAGTAGAGC CGATGAGTCT TTCTGATTAA TTTAAGGTCA TTAAATTAGA TTAGATTACA
TTACATTACT TAATGTTTTC AATAAAAATG CTATTTACTA TAGTTTCACC ACCAGATCAA GTTAATAGTT TATATTCCAC
TGTCTTAGCT TGCCTAGTAA CTGTGTCTTT TGGTGCACTT AGGCAAACCT TGACACTAAA CTAGTCTAGC GGTCAAATTA
CCAAACTCTT TGTAGTTAGG AAGTTACAAT GTTTGCGTTA GCAGAAAATA TTTTCTAGTT GGCTGTTGTG GACTTTGTTT
ATCCTGTAAC GTGAATTATA GTTAATGTTT TTTCTTATAA TTTTGGTGTG ACCTGATGAA TTTGCAGATT CCTTTGGCCC
TAATTCGGGG AAGGGTTACC CATATTGTGT GGCCTCCTCA AAGAATAGGA GCTGTCAAGA GTACTCCACC ACAAAGATTA
TCTTCTGTAT CGGAATAAGA CTATTTTCGT TTCTGTATAA TTGGATCCCA CCTCTATTGT TTAGTGTCCT CAAATAATAG
ATGTGAAAGA ACTACTCAAA AGAATCTGAC GTGGTTCCCT TGGATGGGGA AAACGATTGT TATTACTGAA GTTGTGTCAC
GGGAAAGGGG ACTTACATAA CCTGTTGTTG ATTTGCCTTA AACCTTGATT ACTTAAAGTA GGTACTGTTA GATATATTAT
ATCTTTTATC TTTATCTTTT ATCTTTTAGT TAGTTTGTTA TTATTTCTTA TTTGTATTTT GGGCTTAGCC CATATTTCTT
TTATTATAAA TAGAGAACCC TATGTGTGTA TTTAACACAA GGGAGATTAA TCTCATATAT AATTTTCACT A

>Vigan.04G140300.01
GATGTGCACC TAAACACATG GGGTCAAGCA GTTTTCTATG GAACTGTACT AAAAAATTTG TCACAGCTGC TGTCATCACT
GTGACTGTGT CTGATCGTTT TGCGACAGTT GTTCCTGTTC GAGGTGGCTC TATGTCTCCC ACATTAAATC CTAAAACTGG
TTCTCTGATG GAAGATGTTT TTGATGACTA TGTTTTTGTT GAGAAATTTT GCCTTTTGGG GTACGAATTT TCAAATGGCG
ATGTGGTGGT CTTCCGCTCC CCAACGAATC ACAAGGAGAC ACACATAAAA AGAATAGCTG CATTACCTGG TGAATGGTAT
GGCACTCATC ATAACAACGA TGTGATTCGG ATCCCATTAG GACATTGTTG GGTTGAGGGA GACAACTCAG CCTCTAGCAT
TGATTCAAAG TCATTTGGAC CGATTCCTTT GGCCCTAATT CGGGGAAGGG TTACCCATAT TGTGTGGCCT CCTCAAAGAA
TAGGAGCTGT CAAGAGTACT CCACCACAAA GATTATCTTC TGTATCGGAA TAAGACTATT TTCGTTTCTG TATAATTGGA
TCCCACCTCT ATTGTTTAGT GTCCTCAAAT AATAGATGTG AAAGAACTAC TCAAAAGAAT CTGACGTGGT TCCCTTGGAT
GGGGAAAACG ATTGTTATTA CTGAAGTTGT GTCACGGGAA AGGGGACTTA CATAACCTGT TGTTGATTTG CCTTAAACCT
TGATTACTTA AAGTAGGTAC TGTTAGATAT ATTATATCTT TTATCTTTAT CTTTTATCTT TTAGTTAGTT TGTTATTATT
TCTTATTTGT ATTTTGGGCT TAGCCCATAT TTCTTTTATT ATAAATAGAG AACCCTATGT GTGTATTTAA CACAAGGGAG
ATTAATCTCA TATATAATTT TCACTA

>Vigan.04G140300.01
ATGGGGTCAA GCAGTTTTCT ATGGAACTGT ACTAAAAAAT TTGTCACAGC TGCTGTCATC ACTGTGACTG TGTCTGATCG
TTTTGCGACA GTTGTTCCTG TTCGAGGTGG CTCTATGTCT CCCACATTAA ATCCTAAAAC TGGTTCTCTG ATGGAAGATG
TTTTTGATGA CTATGTTTTT GTTGAGAAAT TTTGCCTTTT GGGGTACGAA TTTTCAAATG GCGATGTGGT GGTCTTCCGC
TCCCCAACGA ATCACAAGGA GACACACATA AAAAGAATAG CTGCATTACC TGGTGAATGG TATGGCACTC ATCATAACAA
CGATGTGATT CGGATCCCAT TAGGACATTG TTGGGTTGAG GGAGACAACT CAGCCTCTAG CATTGATTCA AAGTCATTTG
GACCGATTCC TTTGGCCCTA ATTCGGGGAA GGGTTACCCA TATTGTGTGG CCTCCTCAAA GAATAGGAGC TGTCAAGAGT
ACTCCACCAC AAAGATTATC TTCTGTATCG GAATAA

>Vigan.04G140300.01
MGSSSFLWNC TKKFVTAAVI TVTVSDRFAT VVPVRGGSMS PTLNPKTGSL MEDVFDDYVF VEKFCLLGYE FSNGDVVVFR
SPTNHKETHI KRIAALPGEW YGTHHNNDVI RIPLGHCWVE GDNSASSIDS KSFGPIPLAL IRGRVTHIVW PPQRIGAVKS
TPPQRLSSVS E*