GBrowse Details

Vigan.04G136300.01

Basic Information:
Name: Vigan.04G136300.01
Multiple alignment
Variant Information
Position: Chr04:16458350..16461678 (+ strand)
Length: 3329
Functional Information:
Description: Similar to Omega-3 fatty acid desaturase. [B6CI33, Vigna unguiculata]
GO: Biological Process: lipid metabolic process (GO:0006629)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717)
InterPro: Fatty acid desaturase, type 1 (IPR005804)
Protein of unknown function DUF3474 (IPR021863)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.75,23.75,21.98,27.06,10.64,11.15, 13.06,28.68
Arabidopsis thaliana homolog: AT2G29980.1, AT3G11170.1, AT5G05580.1
Automatic updates:
Name: GQ144962 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cultivar volania omega-3 fatty acid desaturase (FAD7-1) mRNA, complete cds; chloroplast.
PubMed ID: 20547564 NCBI(pubmed)
Status: Known Variant
Name: NM_001250432 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chloroplast omega 3 fatty acid desaturase isoform 2 (FAD7), mRNA.
PubMed ID: 22865909 NCBI(pubmed)
20547564 NCBI(pubmed)
17951449 NCBI(pubmed)
16930600 NCBI(pubmed)
Status: Known Variant
Name: NM_001250432 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max omega-3 fatty acid desaturase, chloroplastic (GMFAD7-2), mRNA.
PubMed ID: 22865909 NCBI(pubmed)
20547564 NCBI(pubmed)
17951449 NCBI(pubmed)
16930600 NCBI(pubmed)
Status: Known Variant
Name: NM_001250909 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max omega-3 fatty acid desaturase (FAD7-1), mRNA.
PubMed ID: 20547564 NCBI(pubmed)
17951449 NCBI(pubmed)
16930600 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:16458350..16458927 (+ strand)
Length: 578
Type: five_prime_UTR
Position: Chr04:16458928..16459451 (+ strand)
Length: 524
Type: CDS
Position: Chr04:16459576..16459665 (+ strand)
Length: 90
Type: CDS
Position: Chr04:16459987..16460053 (+ strand)
Length: 67
Type: CDS
Position: Chr04:16460151..16460243 (+ strand)
Length: 93
Type: CDS
Position: Chr04:16460347..16460532 (+ strand)
Length: 186
Type: CDS
Position: Chr04:16460627..16460707 (+ strand)
Length: 81
Type: CDS
Position: Chr04:16461004..16461141 (+ strand)
Length: 138
Type: CDS
Position: Chr04:16461229..16461414 (+ strand)
Length: 186
Type: CDS
Position: Chr04:16461415..16461678 (+ strand)
Length: 264
Type: three_prime_UTR

>Vigan.04G136300.01 class=Sequence position=Chr04:16458350..16461678 (+ strand)
TTTGAGAATC GTTATGGTAA AAGTAAACAC GGACTTGGTT GGTCTCTGCA CACAAAACAT ATAAAAAAAT ATTGAATGAC
TAAATTGCCC CTGCAAAATC CACAAACCCC TGTTTCTGCT TCACCCTCTT ATATTTAAGT TCCACCTCCA TGTTCTCACA
TTCATCACCA AGCAACTAAG ATACGGTCTT TTCGCCTCCT TTCAACACCC TTTTGGCCTT TTATTCTTCA AAGCCTCAGA
GCAAAGCTTG AGGACGTGAG AGAATCAAAG GGTTGAAATT CTGTGTGGTT GTTGTTGTTG TTGGAGGTTG AAATACAAGT
TAGTACCCCA AGTGTTTGTT AATAATATTG AATTTAGCTA GCAAGTTGCT CTTTTGAAGT ATTGTATGAC CAAATATTTT
AGTATTTTAG GAGTAGAAAT TTTGCTTCTG TTGGCAATTT TTCTGTTCTC CTTCTGGTTC TCATCTTTTG TGTTCTTCTT
TGTCTCTCGT TTGTCTGGGG ATTTTTCTAT TTTAGTTCCT TCAGACACCA GGAACCTGAC CCTATAAACC CTTTTTTGAA
GCTTCAATCT TGAGTCCTAT GGCGACTTGG GTATTATCAG AATGTGGCAT GAAGCCTCTT GCTCCAGTGT TTCCTAGACC
TAGAATTGGG GCTGCTTTGT CCAGCTCTTC CAAGGTTGGA TTTTCGGACA CAAACAAGAG TGTTGCTGAT CTTAAGTTTC
AACCTTTGAG ATGTAACCTT AGGGATAGAA ATTGGGGGTT GAAAGTGAGT ACCCCTTTGA GGGTTGCTTC CACTGAAGAG
GAGGAGCAAA CTAATGTTGT TGATGTAATG AATGGGACTA ATGTGGTTGA TCATGAGAAG CGTCTAGAAT TTGATCCTGG
TGCTGCACCA CCATTCAACT TGGCTGAGAT TAGGGCTGCT ATTCCAAAGC ATTGCTGGGT GAAGGACCCT TGGAAGTCCA
TGAGCTATGT GGTGAGGGAT GTCATTGTTG TCTTAGGATT GGCTGCTGGT GCTGCATATC TCAATAATTG GTTGGTCTGG
CCTCTCTATT GGGCTGCTCA AGGCACAATG TTTTGGGCTC TGTTTGTTCT TGGTCATGAC TGGTAATAAC TATTTTTCTT
TACTTCATTT TTTCCTAATT TGGATGAAGC TGTATTTTGG GGGTGCTAAG TTGGGTTCCA TAATTTTGAC TTGATGAATT
TTCTTCCTGT TTTTTTGGTG TTTCAGTGGT CATGGAAGCT TTTCAAACAA CCCCAAATTG AACAGTGTTG CTGGGCATCT
GCTACATTCG TCAATTCTAG TACCGTATCA CGGATGGTAT GCAGATGCTT TTTGATGGGA TAGCCTTTTT AAATTTTAGA
GTTAAATATG TTTATATCTT TCAAAACATC TGTACATTTG GTTTTATTTC CTCTAAAAAC TTGGTACGTT TTTAGTCTCA
TCACGGGTGA AAAACATGTT TTTAGTCCAC CAGGGGCTAT AAGCACGTTG CCTTTGATAA ATATACAGGG AGATTAAAAA
CATTAAATTT TTGTAGAGAA AAAAAGAACT GAATTATGAG AGATAAAAGC ATATTTATAA TATTTTTTTA TCTACTTGTA
GCTATAAATT TATGTTTGAA ACTAATATTT TATGCAGGAG AATAAGTCAT AGGACTCATC ACCAAAATCA TGGCCATGTT
GAAAATGATG AATCTTGGCA CCCGGTGAGA CGATACTCAC TGTTCTTGTT TTTAAGAGAT GCCATCTGGC TTCAAATTAT
TTTCCTTGAT CAAAATTTCT GATGTGTTGA TAATCTTGCA GTTGTCTGAA AGAGTGTTCA GGAGCTTGGA CACTGCAACA
CGTATGTTAA GATTCACTGT CCCTTTTCCA CTGCTTGCAT ATCCTGTTTA CCTTGTAAGT TGTTGTACCT ACATGGTTTG
ACCATAATTT GAACATTAAT TATTCTTTAT GTCTTGATAG AAGAATTGAC ATGGTGGCTG TTAATGTTTG AATCCAGTGG
CAGAGGAGTC CTGGGAAGAC TGGTTCTCAC TTTGACCCTA GCAGTGATTT GTTCCTTCCA AATGAAAGAA AAGATGTTCT
TACTTCCACA GCTTGTTGGG CTGCTATGTT GGGATTGCTT GTTGGATTAG GGTTTGTAAT GGGTCCAATT CAACTGCTTA
AGCTTTATGG TGTTCCCTAT GTGGTGAATT TTTTCCCCCT TTCCATCATT TCCATGATCT TTCGTTTTTG AGTCAATAAT
GAATGAAGTT CTCATTTGAC TTTTCTTGGA TCTGTAGTTA TTCGTTATGT GGTTGGATTT GGTAACTTAT TTGCACCATC
ATGGCCATGA AGACAAGTTA CCTTGGTATC GTGGAAAGGT ACCTTTATTC TTTTGAGTCT TTCTTTCCTA TGAAAGGGAC
TGGTCTACTG GAGCATTGGC ATGTTTTTGT TATGCTTGTG AGCTTCATTC TTATATATTG TCAGTGTGAA AAAGTGATAC
TTTCAATCAA TCACAAATTA TTACTGACGA CTTGTAAGAT AATTATTACA CAAGTTGATT AACGTATAAT ACTGGACTGT
GATTAAATGA AGTTATCAGT GCATACACTG TTCACTCTGT TAATGTTTTT CATACAATTT AGTTTACATG TATATCCTCC
TTCATGTTGA ACAGGAATGG AGCTACCTTA GGGGTGGTCT AACTACTCTT GATCGTGATT ATGGATGGCT TAATAACATT
CACCATGACA TTGGAACTCA TGTCATTCAT CACCTATTTC CTCAAATTCC ACACTATCAC TTGGTCGAGG CTGTGAGTGT
CTCTCTACCT TTGTTCAAAG AATGGATAAT GATTTACATG AGATGTTGAG TTTGAATGTT GTTTTTTGTT GTCTTGCAGA
CTGAGGCAGC TAAGCCAGTG TTTGGAGAAT ATTATAGAGA GCCAAAGAAA TCAGCTCCTC TTCCTTTTCA CCTTATTGGG
GACTTAATAA GGAGCTTGAA GACTGACCAT TTTGTTAGTG ACACAGGAGA TGTTGTGTAC TATCAAACTG ACTCTGAGAT
TAATGGCTCA GCCAAATCAG AGTGAAGTTT AAAATTCTTT TCTATATATA GACAAGAGAG ACATAGATGC AGTTCTTAAG
GTTGTAAAAT TGTATTGAGT TTCTCTTGAA GTTACTGCAC TTACTTAGAG TTGAATCCTT CATTTAATAA AGGGATGGAT
GGATCATATA ATTTTATTGT AACTGCATCA TAGAGTGTTT AGGTTAAATG TAGTTTATCC TTTTGAATAG TAAATTCTCT
GTATAAATTG ATTATATGAT ATATAGTGAA GTGATACCTT GGATTATGA

>Vigan.04G136300.01
TTTGAGAATC GTTATGGTAA AAGTAAACAC GGACTTGGTT GGTCTCTGCA CACAAAACAT ATAAAAAAAT ATTGAATGAC
TAAATTGCCC CTGCAAAATC CACAAACCCC TGTTTCTGCT TCACCCTCTT ATATTTAAGT TCCACCTCCA TGTTCTCACA
TTCATCACCA AGCAACTAAG ATACGGTCTT TTCGCCTCCT TTCAACACCC TTTTGGCCTT TTATTCTTCA AAGCCTCAGA
GCAAAGCTTG AGGACGTGAG AGAATCAAAG GGTTGAAATT CTGTGTGGTT GTTGTTGTTG TTGGAGGTTG AAATACAAGT
TAGTACCCCA AGTGTTTGTT AATAATATTG AATTTAGCTA GCAAGTTGCT CTTTTGAAGT ATTGTATGAC CAAATATTTT
AGTATTTTAG GAGTAGAAAT TTTGCTTCTG TTGGCAATTT TTCTGTTCTC CTTCTGGTTC TCATCTTTTG TGTTCTTCTT
TGTCTCTCGT TTGTCTGGGG ATTTTTCTAT TTTAGTTCCT TCAGACACCA GGAACCTGAC CCTATAAACC CTTTTTTGAA
GCTTCAATCT TGAGTCCTAT GGCGACTTGG GTATTATCAG AATGTGGCAT GAAGCCTCTT GCTCCAGTGT TTCCTAGACC
TAGAATTGGG GCTGCTTTGT CCAGCTCTTC CAAGGTTGGA TTTTCGGACA CAAACAAGAG TGTTGCTGAT CTTAAGTTTC
AACCTTTGAG ATGTAACCTT AGGGATAGAA ATTGGGGGTT GAAAGTGAGT ACCCCTTTGA GGGTTGCTTC CACTGAAGAG
GAGGAGCAAA CTAATGTTGT TGATGTAATG AATGGGACTA ATGTGGTTGA TCATGAGAAG CGTCTAGAAT TTGATCCTGG
TGCTGCACCA CCATTCAACT TGGCTGAGAT TAGGGCTGCT ATTCCAAAGC ATTGCTGGGT GAAGGACCCT TGGAAGTCCA
TGAGCTATGT GGTGAGGGAT GTCATTGTTG TCTTAGGATT GGCTGCTGGT GCTGCATATC TCAATAATTG GTTGGTCTGG
CCTCTCTATT GGGCTGCTCA AGGCACAATG TTTTGGGCTC TGTTTGTTCT TGGTCATGAC TGTGGTCATG GAAGCTTTTC
AAACAACCCC AAATTGAACA GTGTTGCTGG GCATCTGCTA CATTCGTCAA TTCTAGTACC GTATCACGGA TGGAGAATAA
GTCATAGGAC TCATCACCAA AATCATGGCC ATGTTGAAAA TGATGAATCT TGGCACCCGT TGTCTGAAAG AGTGTTCAGG
AGCTTGGACA CTGCAACACG TATGTTAAGA TTCACTGTCC CTTTTCCACT GCTTGCATAT CCTGTTTACC TTTGGCAGAG
GAGTCCTGGG AAGACTGGTT CTCACTTTGA CCCTAGCAGT GATTTGTTCC TTCCAAATGA AAGAAAAGAT GTTCTTACTT
CCACAGCTTG TTGGGCTGCT ATGTTGGGAT TGCTTGTTGG ATTAGGGTTT GTAATGGGTC CAATTCAACT GCTTAAGCTT
TATGGTGTTC CCTATGTGTT ATTCGTTATG TGGTTGGATT TGGTAACTTA TTTGCACCAT CATGGCCATG AAGACAAGTT
ACCTTGGTAT CGTGGAAAGG AATGGAGCTA CCTTAGGGGT GGTCTAACTA CTCTTGATCG TGATTATGGA TGGCTTAATA
ACATTCACCA TGACATTGGA ACTCATGTCA TTCATCACCT ATTTCCTCAA ATTCCACACT ATCACTTGGT CGAGGCTACT
GAGGCAGCTA AGCCAGTGTT TGGAGAATAT TATAGAGAGC CAAAGAAATC AGCTCCTCTT CCTTTTCACC TTATTGGGGA
CTTAATAAGG AGCTTGAAGA CTGACCATTT TGTTAGTGAC ACAGGAGATG TTGTGTACTA TCAAACTGAC TCTGAGATTA
ATGGCTCAGC CAAATCAGAG TGAAGTTTAA AATTCTTTTC TATATATAGA CAAGAGAGAC ATAGATGCAG TTCTTAAGGT
TGTAAAATTG TATTGAGTTT CTCTTGAAGT TACTGCACTT ACTTAGAGTT GAATCCTTCA TTTAATAAAG GGATGGATGG
ATCATATAAT TTTATTGTAA CTGCATCATA GAGTGTTTAG GTTAAATGTA GTTTATCCTT TTGAATAGTA AATTCTCTGT
ATAAATTGAT TATATGATAT ATAGTGAAGT GATACCTTGG ATTATGA

>Vigan.04G136300.01
ATGGCGACTT GGGTATTATC AGAATGTGGC ATGAAGCCTC TTGCTCCAGT GTTTCCTAGA CCTAGAATTG GGGCTGCTTT
GTCCAGCTCT TCCAAGGTTG GATTTTCGGA CACAAACAAG AGTGTTGCTG ATCTTAAGTT TCAACCTTTG AGATGTAACC
TTAGGGATAG AAATTGGGGG TTGAAAGTGA GTACCCCTTT GAGGGTTGCT TCCACTGAAG AGGAGGAGCA AACTAATGTT
GTTGATGTAA TGAATGGGAC TAATGTGGTT GATCATGAGA AGCGTCTAGA ATTTGATCCT GGTGCTGCAC CACCATTCAA
CTTGGCTGAG ATTAGGGCTG CTATTCCAAA GCATTGCTGG GTGAAGGACC CTTGGAAGTC CATGAGCTAT GTGGTGAGGG
ATGTCATTGT TGTCTTAGGA TTGGCTGCTG GTGCTGCATA TCTCAATAAT TGGTTGGTCT GGCCTCTCTA TTGGGCTGCT
CAAGGCACAA TGTTTTGGGC TCTGTTTGTT CTTGGTCATG ACTGTGGTCA TGGAAGCTTT TCAAACAACC CCAAATTGAA
CAGTGTTGCT GGGCATCTGC TACATTCGTC AATTCTAGTA CCGTATCACG GATGGAGAAT AAGTCATAGG ACTCATCACC
AAAATCATGG CCATGTTGAA AATGATGAAT CTTGGCACCC GTTGTCTGAA AGAGTGTTCA GGAGCTTGGA CACTGCAACA
CGTATGTTAA GATTCACTGT CCCTTTTCCA CTGCTTGCAT ATCCTGTTTA CCTTTGGCAG AGGAGTCCTG GGAAGACTGG
TTCTCACTTT GACCCTAGCA GTGATTTGTT CCTTCCAAAT GAAAGAAAAG ATGTTCTTAC TTCCACAGCT TGTTGGGCTG
CTATGTTGGG ATTGCTTGTT GGATTAGGGT TTGTAATGGG TCCAATTCAA CTGCTTAAGC TTTATGGTGT TCCCTATGTG
TTATTCGTTA TGTGGTTGGA TTTGGTAACT TATTTGCACC ATCATGGCCA TGAAGACAAG TTACCTTGGT ATCGTGGAAA
GGAATGGAGC TACCTTAGGG GTGGTCTAAC TACTCTTGAT CGTGATTATG GATGGCTTAA TAACATTCAC CATGACATTG
GAACTCATGT CATTCATCAC CTATTTCCTC AAATTCCACA CTATCACTTG GTCGAGGCTA CTGAGGCAGC TAAGCCAGTG
TTTGGAGAAT ATTATAGAGA GCCAAAGAAA TCAGCTCCTC TTCCTTTTCA CCTTATTGGG GACTTAATAA GGAGCTTGAA
GACTGACCAT TTTGTTAGTG ACACAGGAGA TGTTGTGTAC TATCAAACTG ACTCTGAGAT TAATGGCTCA GCCAAATCAG
AGTGA

>Vigan.04G136300.01
MATWVLSECG MKPLAPVFPR PRIGAALSSS SKVGFSDTNK SVADLKFQPL RCNLRDRNWG LKVSTPLRVA STEEEEQTNV
VDVMNGTNVV DHEKRLEFDP GAAPPFNLAE IRAAIPKHCW VKDPWKSMSY VVRDVIVVLG LAAGAAYLNN WLVWPLYWAA
QGTMFWALFV LGHDCGHGSF SNNPKLNSVA GHLLHSSILV PYHGWRISHR THHQNHGHVE NDESWHPLSE RVFRSLDTAT
RMLRFTVPFP LLAYPVYLWQ RSPGKTGSHF DPSSDLFLPN ERKDVLTSTA CWAAMLGLLV GLGFVMGPIQ LLKLYGVPYV
LFVMWLDLVT YLHHHGHEDK LPWYRGKEWS YLRGGLTTLD RDYGWLNNIH HDIGTHVIHH LFPQIPHYHL VEATEAAKPV
FGEYYREPKK SAPLPFHLIG DLIRSLKTDH FVSDTGDVVY YQTDSEINGS AKSE*