GBrowse Details

Vigan.04G133900.01

Basic Information:
Name: Vigan.04G133900.01
Multiple alignment
Variant Information
Position: Chr04:16132239..16134271 (+ strand)
Length: 2033
Functional Information:
Description: Similar to Late embryogenesis abundant protein. [A4VBF1, Vigna radiata]
InterPro: Stress induced protein (IPR000389)
Small hydrophilic plant seed protein, conserved site (IPR022377)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:623.36,3571.96,0.00,0.77,0.26,62.00, 0.57,0.43
Arabidopsis thaliana homolog: AT3G51810.1
Structure :
Position: Chr04:16132239..16132665 (+ strand)
Length: 427
Type: five_prime_UTR
Position: Chr04:16132666..16132783 (+ strand)
Length: 118
Type: CDS
Position: Chr04:16132979..16133199 (+ strand)
Length: 221
Type: CDS
Position: Chr04:16133200..16134271 (+ strand)
Length: 1072
Type: three_prime_UTR

>Vigan.04G133900.01 class=Sequence position=Chr04:16132239..16134271 (+ strand)
AAATTTCAAT AATAATAATT TCTCAGATTA TTATTAAAAG TACAAGTACA CTTTTGCTTT GTCCTAAGTC ACATAGCAAA
TCTATCTGTT TACAAATTAT ATCTATATGA CATTATTTCT CAATTTAGTT TAAAGGCAAA GAATCGTATG TGTCATGATA
TGCCATTTTT ACGTGTCACC TTATAAGTAC GTGCCATCTT TCACATAAAG CCACGTGTGC AAGCATGCCA ACACCTGCAT
TTCCATTACA GTGGTAACAA TAATCTAGGC TTATCTTTCA CTGCTATACT GATCACTCTG CATTAGTTTA CTCCTTTGCA
TGCATACTTT TACACACTAT AAAAAGATGA ACCTTTCTAC CTCAGGTATG TGAACAATCT TGAAGTCTTT CTCTGTGGTG
TGAAAAATCT GAGTTGAAGC AATCAACATG GCATCAAAAC AAGCAAACCG TGAAGAACTT GATGAGAGGG CAAAGCAAGG
AGAAACTGTG GTTCCTGGTG GAACTGGAGG GAAGAGTCTT GAGGCCCAAG AACATCTTGC TGAAGGCATG CATGCACTCT
CTCTCTCTCT CTCTCTCTCT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
CAAGAACAAA GTGTTAATGT CAATTTTTTT CATTGAAGCA AAAACATATA TCTTAAATTT TACTTTAAGA TGATTTTGTA
TGATGTGAAT GTGTGTGTAG GAAGGAGCCG TGGAGGGCAG ACGAGGAAGC AACAGCTGGG GTCAGAGGGG TATCATGAGA
TGGGAACCAA AGGAGGGCAG ACAAGAAAGG AGCAGATGGG GACGGAAGGG TACAAAGAAA TGGGACGCAA AGGAGGGCTC
AGCACCATGG AGAAGTCTGG TGCAGAACGT GCTGAAGAGG AAGGCATAGA AATTGATGAG TCCAAGTTTA AGAAAAACTA
AGAATGTGTG AGGAAGTAGT GTTTTGTTCT AGTTGTTTAG TATATGGGTT ATGATGTAGC AGTGAATATC TGTAGGACAC
TACAGACTAG TACTAAAAAG AATATGTTTT GATGCTTCTG TTTGGAAGCA ATGCTAAGTT TTTCAGCCAG CTTTACGAAA
GCTTAGGCAG TCTTAATAAA AAACGGGGTA TGTTTAATAT AGTGATGTTG AAGTAAGTGT TAAACTCTCA GTTGAGAGTC
TCCTTTACTT AATGTTGAAT TGTGTTCTGT TGTCTACTTT CATCAAGTTT TCAGAGTGGC CTTATGAAAG TTTATCCTTG
TTTTGTGGTG TTTATAATTG TATTGTCCGA GGTGAAATGG ATGAACAAGG AGGGAATAAC GGAAATAGCT TTAAATTTTA
TCTCAAATCA AAGATAGGTA GAAAGGGTCC GTGGTTCAAG GGAATGTGTC TACACTTTGT ACAATTCATA GTCCTTTTAA
GCTTCCTAAA GAGAAAATAA TCAAAAATTG AACAAGGGGA TAAGAGGAGA GAGCAAGAAG GATGAGGGGA AAGCAAAAGC
TATGGCCATA TCTTGAATGC AGGTATCCCA CTCTTATATC CCTTCTAATC GGTGAGTCCC TTCTTTATTA TATGTGAATT
AATGCCCCTT TGGTAGCTTT TTTTGCGCAT GAAGATCAGT GGCTAGTTGC TAGAGCAGTA ACCAACAGAC CAAGCACCAA
AAATGGCTGT GCACTAGCCT GAAAATAAAA GAAAAATAAT GTTAGATGTA GTTGAAATAA TTCCTGATAT ACCATTTCCA
ATAACTATGA ATGTCGTCCA TTTTGTAATG CTTGCAAACT ATAGTTAAGC ATTCATTATG TACCTGATAT TTAACATCAT
ATTTCACAGG GTCCTTGAGG AAGTACTTGA ACTGCAAGGC ACAAGATGAT AAGAACAGTT TTAGCTAGCA GTGACATGAT
TGTCATTAAT ATTTTAGCTT GTAATATCGT GCTTTACCTG AAATATGACT TGTGGAATAA TTAAACCAAG CAAAGCCAAC
GCATAAAGCG GTTTATCAGC CCCAAGTAAA TAT

>Vigan.04G133900.01
AAATTTCAAT AATAATAATT TCTCAGATTA TTATTAAAAG TACAAGTACA CTTTTGCTTT GTCCTAAGTC ACATAGCAAA
TCTATCTGTT TACAAATTAT ATCTATATGA CATTATTTCT CAATTTAGTT TAAAGGCAAA GAATCGTATG TGTCATGATA
TGCCATTTTT ACGTGTCACC TTATAAGTAC GTGCCATCTT TCACATAAAG CCACGTGTGC AAGCATGCCA ACACCTGCAT
TTCCATTACA GTGGTAACAA TAATCTAGGC TTATCTTTCA CTGCTATACT GATCACTCTG CATTAGTTTA CTCCTTTGCA
TGCATACTTT TACACACTAT AAAAAGATGA ACCTTTCTAC CTCAGGTATG TGAACAATCT TGAAGTCTTT CTCTGTGGTG
TGAAAAATCT GAGTTGAAGC AATCAACATG GCATCAAAAC AAGCAAACCG TGAAGAACTT GATGAGAGGG CAAAGCAAGG
AGAAACTGTG GTTCCTGGTG GAACTGGAGG GAAGAGTCTT GAGGCCCAAG AACATCTTGC TGAAGGAAGG AGCCGTGGAG
GGCAGACGAG GAAGCAACAG CTGGGGTCAG AGGGGTATCA TGAGATGGGA ACCAAAGGAG GGCAGACAAG AAAGGAGCAG
ATGGGGACGG AAGGGTACAA AGAAATGGGA CGCAAAGGAG GGCTCAGCAC CATGGAGAAG TCTGGTGCAG AACGTGCTGA
AGAGGAAGGC ATAGAAATTG ATGAGTCCAA GTTTAAGAAA AACTAAGAAT GTGTGAGGAA GTAGTGTTTT GTTCTAGTTG
TTTAGTATAT GGGTTATGAT GTAGCAGTGA ATATCTGTAG GACACTACAG ACTAGTACTA AAAAGAATAT GTTTTGATGC
TTCTGTTTGG AAGCAATGCT AAGTTTTTCA GCCAGCTTTA CGAAAGCTTA GGCAGTCTTA ATAAAAAACG GGGTATGTTT
AATATAGTGA TGTTGAAGTA AGTGTTAAAC TCTCAGTTGA GAGTCTCCTT TACTTAATGT TGAATTGTGT TCTGTTGTCT
ACTTTCATCA AGTTTTCAGA GTGGCCTTAT GAAAGTTTAT CCTTGTTTTG TGGTGTTTAT AATTGTATTG TCCGAGGTGA
AATGGATGAA CAAGGAGGGA ATAACGGAAA TAGCTTTAAA TTTTATCTCA AATCAAAGAT AGGTAGAAAG GGTCCGTGGT
TCAAGGGAAT GTGTCTACAC TTTGTACAAT TCATAGTCCT TTTAAGCTTC CTAAAGAGAA AATAATCAAA AATTGAACAA
GGGGATAAGA GGAGAGAGCA AGAAGGATGA GGGGAAAGCA AAAGCTATGG CCATATCTTG AATGCAGGTA TCCCACTCTT
ATATCCCTTC TAATCGGTGA GTCCCTTCTT TATTATATGT GAATTAATGC CCCTTTGGTA GCTTTTTTTG CGCATGAAGA
TCAGTGGCTA GTTGCTAGAG CAGTAACCAA CAGACCAAGC ACCAAAAATG GCTGTGCACT AGCCTGAAAA TAAAAGAAAA
ATAATGTTAG ATGTAGTTGA AATAATTCCT GATATACCAT TTCCAATAAC TATGAATGTC GTCCATTTTG TAATGCTTGC
AAACTATAGT TAAGCATTCA TTATGTACCT GATATTTAAC ATCATATTTC ACAGGGTCCT TGAGGAAGTA CTTGAACTGC
AAGGCACAAG ATGATAAGAA CAGTTTTAGC TAGCAGTGAC ATGATTGTCA TTAATATTTT AGCTTGTAAT ATCGTGCTTT
ACCTGAAATA TGACTTGTGG AATAATTAAA CCAAGCAAAG CCAACGCATA AAGCGGTTTA TCAGCCCCAA GTAAATAT

>Vigan.04G133900.01
ATGGCATCAA AACAAGCAAA CCGTGAAGAA CTTGATGAGA GGGCAAAGCA AGGAGAAACT GTGGTTCCTG GTGGAACTGG
AGGGAAGAGT CTTGAGGCCC AAGAACATCT TGCTGAAGGA AGGAGCCGTG GAGGGCAGAC GAGGAAGCAA CAGCTGGGGT
CAGAGGGGTA TCATGAGATG GGAACCAAAG GAGGGCAGAC AAGAAAGGAG CAGATGGGGA CGGAAGGGTA CAAAGAAATG
GGACGCAAAG GAGGGCTCAG CACCATGGAG AAGTCTGGTG CAGAACGTGC TGAAGAGGAA GGCATAGAAA TTGATGAGTC
CAAGTTTAAG AAAAACTAA

>Vigan.04G133900.01
MASKQANREE LDERAKQGET VVPGGTGGKS LEAQEHLAEG RSRGGQTRKQ QLGSEGYHEM GTKGGQTRKE QMGTEGYKEM
GRKGGLSTME KSGAERAEEE GIEIDESKFK KN*