GBrowse Details

Vigan.04G129800.01

Basic Information:
Name: Vigan.04G129800.01
Multiple alignment
Variant Information
Position: Chr04:15452149..15454926 (+ strand)
Length: 2778
Functional Information:
Description: Similar to Ferritin. [Q66N72, Phaseolus angularis]
GO: Biological Process: iron ion transport (GO:0006826)
Biological Process: cellular iron ion homeostasis (GO:0006879)
Molecular Function: ferric iron binding (GO:0008199)
InterPro: Ferritin (IPR001519)
Ferritin/DPS protein domain (IPR008331)
Ferritin- like diiron domain (IPR009040)
Ferritin-like superfamily (IPR009078)
Ferritin-related (IPR012347)
Ferritin, conserved site (IPR014034)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:258.98,20.05,108.57,43.92,130.56,564 .28,50.62,24.12
Automatic updates:
Name: KX832295 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cultivar Co(Soy) 3 ferritin mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001249605 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ferritin (LOC547698), mRNA.
PubMed ID: 18037378 NCBI(pubmed)
Status: Known Variant
Name: NM_001249605 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ferritin (LOC547698), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001329818 NCBI(nuccore)
Organism: Vigna angularis
Description: Vigna angularis ferritin, chloroplastic (LOC108329281), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:15452149..15452347 (+ strand)
Length: 199
Type: five_prime_UTR
Position: Chr04:15452348..15452640 (+ strand)
Length: 293
Type: CDS
Position: Chr04:15453424..15453507 (+ strand)
Length: 84
Type: CDS
Position: Chr04:15453606..15453666 (+ strand)
Length: 61
Type: CDS
Position: Chr04:15453773..15453860 (+ strand)
Length: 88
Type: CDS
Position: Chr04:15453981..15454042 (+ strand)
Length: 62
Type: CDS
Position: Chr04:15454130..15454195 (+ strand)
Length: 66
Type: CDS
Position: Chr04:15454496..15454559 (+ strand)
Length: 64
Type: CDS
Position: Chr04:15454686..15454735 (+ strand)
Length: 50
Type: CDS
Position: Chr04:15454736..15454926 (+ strand)
Length: 191
Type: three_prime_UTR

>Vigan.04G129800.01 class=Sequence position=Chr04:15452149..15454926 (+ strand)
AAAATATAGA TCTCACTTTT CAAAACTCCC AAAATACCCC TCCCTCCACC TACATATACC TTCTTGTCCC ACGCAAGCTT
CACCACCACC ACAACTCAGA CCTCAATTCT TAGCCGCCAT TGTCTCTTCT ACTTCCTTCT CCATTTCCTT TCCCTGTTTC
TCAGCCTTTT TCGATTACCC TTTTGGAGAT TTTGATCTCA TGGCCCTCGC TCCTTCTAAA GTTTCTCCCT TTTCTGGGTT
CTCCCTCTCA GACTGTGTTG GGGGTGCCGC GAGAAACCCA ACTTGTTCTG TTTCTTTGAG TTTTCTGAAT AAGAAAGGGG
AAAGCAGAAA CCTTGGGGTT TCTGCCTCAA CTGCGCCTCT CACTGGGGTG ATCTTTGAAC CCTTTGAGGA GGTTAAGAAG
GAAGAGCTCG CTGTTCCCAC TGCTCCACAG GTTTCGTTGG CTCGTCAGTA TTACGCTGAT GATTGCGAAT CTGCGATTAA
CGAGCAGATT AAGTGAGCAC TTCTTTGATT TTCACCTCTT TGTTTGGTTA ATTTTGGAGT AATTACTTGT GATTCTATTC
TTTTTGTTTT TATTATCTGT GATGTTTTTG TTTACAAATC TGTTATTGTG TTTTCTGTCC CCTTTTTAAA GAGATTTGTT
TAAACAGATT GAAAAGGTTA TAATAGACAG ATGAGAACAG AAATAAAAAG AACACTTTTA AGAGTTTTTT TTTTTTTTTA
ATTTAAGCAG ATCAAGCGAT TATTTTAATA TATAAAGTGA GTCTTTTGCG TTATTGAGTG ATTTAACTTT TCCTTGTACT
AGGGCTTATA AATTAAAAAT CGCATGATGA TTATTATAAG GACACGAATG ATAATCATTG ATCTCATAAA AGAATCTAAC
ATTTAACAAT CACTCTGCTT CTATTTTTTA GATCTCTGTT CTGCGAGTTT TGATCCTGAA ATTAAAAAGG GTAAAATATG
TATATATAAA ATCCTCTGTT TTTGTACTAT AAAAATTGTG GTTTTGGTTT TAACATATCA TTTCTGAGGT GCGGTGGTTG
TCCTTAATTA CTTCGAAACG AAAGTACAAG ATCTGGACCA AAGCAGTAAT TTTTCACAAC ATCAGGACCA AAACCATCAC
TTTTAAAAGA TGTATTAAAA ACAAATTTGA TAAAATTTTG GGATTTTTAA AAACGCATTC AAAAAACAAG AGTGAAATTT
TATATAATTT TTTATTTGCT GCTTCTAATA CTGGTGCCCT GCTAAGAGTT TTTCCTCTTC GGTTTTGTGT CTCAGTGTGG
AATACAATGC TTCCTATGTG TACCACTCCT TGTTTGCATA CTTTGACAGG GACAACGTAG CTCTCAAGGG ATTTGCCAAG
TAACTAACTC TAAACCCCTT GTGTCTTCTT TCCCTTAAAG TTTCTTCCAT TTCTCAAAAC GGATGTTCAT TTCTCGAGCT
TTTATTGTTC AAAACAGGTT CTTCAAGGAA TCTAGTGAAG AAGAAAGAGA GCATGCTGAA AAGCTTATGA AATATCAGGT
TCAATTATAA TTAACTGTTA ACTCCAAATC ATCCAACTAA AATTAACTTC TCTAATGTTA CATGACAATA TACTGATAAA
TGTGGTTCTT GTTAAATTGT TTAGAACACT CGTGGTGGAA GAGTTGTTCT TCACTCCATC AAGAATGTAC CCTCAGAATT
TGAGCATGTG GAAAAGGGGG ATGCATTACA TGGTGAGCTT GCTGATTTAG TTACTCTTTT AATGACTCTG TTAAGTTCTG
AAACTGTGCA ATGTGGTCTC ATGTGATGTC AATGGAATAT ATATGCTGAC TTTCCTCTAT TTTCTTGTTC AGCAATGGAA
TTAGCTTTGT CTTTGGAGAA GTTGGTGAAT GAGAAACTTC GGAGTGTGCA CAGTGTAATG CGTCTTTACT TTTCTGCTTT
TAGTTTTTGT TTTTCTCTTA ATTATTTTTT CATGTGGAAC TCAAATTATT TGATCTAACA GGTGGCAGAT CGCAACAATG
ACCCTCAATT GGCTGACTTC ATAGAAAGCG AGTTTCTGTC TGAACAGGTG AAACTCATAT AAACTGCAGA GTGGTTGTGT
ATCCATAGAA ATTTCGGCAT TTAACAATAT ATATTAGGAA ATTGAAAGAA ATTGCCAAAA AAGAATATAG ATGAACTGTG
TGTTTTTTCC AAAGCAAACC ACTAAATGGG GGTGTTTGTT GAATGAGGCT AATAAAAACT GAAACTCATT ACTTTTGTAC
CTGTGTAGTG AACACTGAGC TTGATTTTTC AAATTGAGAT TGTATCTTGC TTATATTACC AATGTGTTTT ATGCGTTAAA
TAAAACATAT CTCTTTCTTC TGTACAGGTT GAAGCAATTA AGAAGATATC AGAGTATGTG GCTCAACTGA GGAGGGTCGG
AAAGGGTCAC GGTATGTTTT GCTACATTAC TTCTCATATT TGTTGAAAAC TATGCCTTTG GTGTACATTT CCATTAGTAT
GGTAATTTTC TCCCAATACC TATTACTTCT ACTTACATTA TACTTTATGG CTTGCAGGTG TGTGGCACTT TGATCAAAGT
CTTCTTCATG ATGGACATGC TGCTTGAATA GTCTTTATAG TTCTCGTTTC CATTTGTTCT TCCATTGCCT TCTGAGCTGT
TTTCTAATTT AGAAGTAGAA TTTAAATGTT TTTCCTCTGT ATTGAGGTGT AAGAACTTGT AGTGTTGTCG CAGCAAGTAT
GTAAAAGACT ACATGTTATG CAATATCATT TGATATTTCT TTCTCTTTTC AACTGCAA

>Vigan.04G129800.01
AAAATATAGA TCTCACTTTT CAAAACTCCC AAAATACCCC TCCCTCCACC TACATATACC TTCTTGTCCC ACGCAAGCTT
CACCACCACC ACAACTCAGA CCTCAATTCT TAGCCGCCAT TGTCTCTTCT ACTTCCTTCT CCATTTCCTT TCCCTGTTTC
TCAGCCTTTT TCGATTACCC TTTTGGAGAT TTTGATCTCA TGGCCCTCGC TCCTTCTAAA GTTTCTCCCT TTTCTGGGTT
CTCCCTCTCA GACTGTGTTG GGGGTGCCGC GAGAAACCCA ACTTGTTCTG TTTCTTTGAG TTTTCTGAAT AAGAAAGGGG
AAAGCAGAAA CCTTGGGGTT TCTGCCTCAA CTGCGCCTCT CACTGGGGTG ATCTTTGAAC CCTTTGAGGA GGTTAAGAAG
GAAGAGCTCG CTGTTCCCAC TGCTCCACAG GTTTCGTTGG CTCGTCAGTA TTACGCTGAT GATTGCGAAT CTGCGATTAA
CGAGCAGATT AATGTGGAAT ACAATGCTTC CTATGTGTAC CACTCCTTGT TTGCATACTT TGACAGGGAC AACGTAGCTC
TCAAGGGATT TGCCAAGTTC TTCAAGGAAT CTAGTGAAGA AGAAAGAGAG CATGCTGAAA AGCTTATGAA ATATCAGAAC
ACTCGTGGTG GAAGAGTTGT TCTTCACTCC ATCAAGAATG TACCCTCAGA ATTTGAGCAT GTGGAAAAGG GGGATGCATT
ACATGCAATG GAATTAGCTT TGTCTTTGGA GAAGTTGGTG AATGAGAAAC TTCGGAGTGT GCACAGTGTG GCAGATCGCA
ACAATGACCC TCAATTGGCT GACTTCATAG AAAGCGAGTT TCTGTCTGAA CAGGTTGAAG CAATTAAGAA GATATCAGAG
TATGTGGCTC AACTGAGGAG GGTCGGAAAG GGTCACGGTG TGTGGCACTT TGATCAAAGT CTTCTTCATG ATGGACATGC
TGCTTGAATA GTCTTTATAG TTCTCGTTTC CATTTGTTCT TCCATTGCCT TCTGAGCTGT TTTCTAATTT AGAAGTAGAA
TTTAAATGTT TTTCCTCTGT ATTGAGGTGT AAGAACTTGT AGTGTTGTCG CAGCAAGTAT GTAAAAGACT ACATGTTATG
CAATATCATT TGATATTTCT TTCTCTTTTC AACTGCAA

>Vigan.04G129800.01
ATGGCCCTCG CTCCTTCTAA AGTTTCTCCC TTTTCTGGGT TCTCCCTCTC AGACTGTGTT GGGGGTGCCG CGAGAAACCC
AACTTGTTCT GTTTCTTTGA GTTTTCTGAA TAAGAAAGGG GAAAGCAGAA ACCTTGGGGT TTCTGCCTCA ACTGCGCCTC
TCACTGGGGT GATCTTTGAA CCCTTTGAGG AGGTTAAGAA GGAAGAGCTC GCTGTTCCCA CTGCTCCACA GGTTTCGTTG
GCTCGTCAGT ATTACGCTGA TGATTGCGAA TCTGCGATTA ACGAGCAGAT TAATGTGGAA TACAATGCTT CCTATGTGTA
CCACTCCTTG TTTGCATACT TTGACAGGGA CAACGTAGCT CTCAAGGGAT TTGCCAAGTT CTTCAAGGAA TCTAGTGAAG
AAGAAAGAGA GCATGCTGAA AAGCTTATGA AATATCAGAA CACTCGTGGT GGAAGAGTTG TTCTTCACTC CATCAAGAAT
GTACCCTCAG AATTTGAGCA TGTGGAAAAG GGGGATGCAT TACATGCAAT GGAATTAGCT TTGTCTTTGG AGAAGTTGGT
GAATGAGAAA CTTCGGAGTG TGCACAGTGT GGCAGATCGC AACAATGACC CTCAATTGGC TGACTTCATA GAAAGCGAGT
TTCTGTCTGA ACAGGTTGAA GCAATTAAGA AGATATCAGA GTATGTGGCT CAACTGAGGA GGGTCGGAAA GGGTCACGGT
GTGTGGCACT TTGATCAAAG TCTTCTTCAT GATGGACATG CTGCTTGA

>Vigan.04G129800.01
MALAPSKVSP FSGFSLSDCV GGAARNPTCS VSLSFLNKKG ESRNLGVSAS TAPLTGVIFE PFEEVKKEEL AVPTAPQVSL
ARQYYADDCE SAINEQINVE YNASYVYHSL FAYFDRDNVA LKGFAKFFKE SSEEEREHAE KLMKYQNTRG GRVVLHSIKN
VPSEFEHVEK GDALHAMELA LSLEKLVNEK LRSVHSVADR NNDPQLADFI ESEFLSEQVE AIKKISEYVA QLRRVGKGHG
VWHFDQSLLH DGHAA*