GBrowse Details

Vigan.04G129600.01

Basic Information:
Name: Vigan.04G129600.01
Multiple alignment
Variant Information
Position: Chr04:15402705..15406597 (+ strand)
Length: 3893
Functional Information:
Description: Similar to Cp protein. [Q70VA9, Celosia cristata.]
InterPro: Protein of unknown function DUF538 (IPR007493)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:65.75,39.38,18.23,35.18,21.57,21.22,51.33,13.52
Arabidopsis thaliana homolog: AT5G37070.1
Automatic updates:
Name: NM_001248432 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305947 (LOC100305947), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:15402705..15402840 (+ strand)
Length: 136
Type: five_prime_UTR
Position: Chr04:15402841..15402927 (+ strand)
Length: 87
Type: CDS
Position: Chr04:15405076..15405130 (+ strand)
Length: 55
Type: CDS
Position: Chr04:15405855..15406225 (+ strand)
Length: 371
Type: CDS
Position: Chr04:15406226..15406597 (+ strand)
Length: 372
Type: three_prime_UTR

>Vigan.04G129600.01 class=Sequence position=Chr04:15402705..15406597 (+ strand)
TCCAAAAGCA ACAATAAAGT GAAAAGAACG TAGCAGAGGT TTGGTCAGAG ATTAGACTTC TCAGAATTTA TGTTGTGAAG
TTGTTTATTC TGAGAAGGAA GAGAGAAAAG AGAAGAGAAA AGAGAAGAAC TCAACTATGG ATGAGATATT GAACAAGGTG
GGGTCATACT GGTTCAGCCG CAAGGCCAGC AAGGAGTTTA ACTCTGTTGG AGATGATATC AACGTACACA CCACAGTCCT
TAACAACCTT TTATCTTTTG TTAGATTCAT TCTTAATTTT CTATCTTTTT TCTGCAAAAA ATTTCCTTTT ATTGAGTTTT
TTCTTCTTCC TTTACCGTAT GACTGCTTCA ATTTTGTGGT TCCGGATGTC ATATTTGCCC CTCTTTTGAA AAAAAATGGA
ATTTAATTTC TTGTTCAACC ATGGAGCAAT GGTTTCGATT GAGGGTTAAG GGTTGAAATA GAGATGTAAA TGATGATTAT
ATATGTGAAT AATGCACACA GGCGTGCCCT TTTGGGGTTC TACGAAAAGG GGACATTTTC AATTTGTTTT TTTAGGTTGT
TATAGGGAGT GATGAGAAAA ATTAGTTTAG CTTGTTTATT TATGTGTGCT AGAGAAAGTT TAGGTCTGGT ATGGGTGGTG
GAATGTGAAC TGCAAGGTAA AACCATGGTG CATGAAGTGG ATTTGAGGTT TTGGTTTATA TCAGTAGAAG GTGCACCTTT
TGAAATCAGG CAGTAACCTT CATCCGAATT TTAAAGTCTT GGTAGTACCT GTTTACTGTG ATTGTATTTC TTTTCTTTTG
CACACCCACA ACGAATTTAC TTGTAGATGT TGGTTCGTTT TTCCCTTTTG GTTACTTGGA GTTCTTTATT GAATAAAACC
TGGGTTATTT GGTAGTTAAT GATGCTTTGT TTCTCAAATT CTCCTGCATT TGATATGTGG ATAACATAAA TCTTGGGGAA
GGTTGCAATG TTTGAATATG ATATATTTCC TGGTGGTTAG TCAATCTGTT ATCATTGTGA TAAGTGTAGC AAACTAACCA
TATTTACTTT AGTGTTGAAG CAGTTTCACT GAAACTGAAA AGAATCACTA TCTATAAATG TGTATGAAAT GTTTATAGAT
ACTTAAATAA TAAAATACTA CGGTTATCAT CAGTTCTGAG ATTTTTAGTT TTTTAAGGCA TTATTTATGG ATTTGGTGAA
TAGAAACTAG GTTATAAGAA AGTATATAGG CGAGCAAAAC ACTGGCATTG TGTCCAGGAT TAGAGTTCAG TTCTCAGCAT
TGCAAGATTA ATTTCGCGAC ACTTTTATTG TAGGGGACAT GAGATTCAAA AAGAATTGGG CAATAATATT TTTAAGGAGC
AACAGGTAAG GGACTAGTAG TAACTTAGGA AGGAAATTTT AGGTTGTGAA TAAACAAAGG AATAGAGAAG CTTTATAAAT
TTTTTGCATG AGTTTTTTCT TTTCCTGGTA AGAAACAAGG GAGTTAGAGT AAAAGACATG AGGATGAAGC ATCTGCTAGT
GCAGAAAAAT AAACCAGGAA TAAAATCATT AATTCCGCTG GCAAAATTAG AAAAAAAAAA AACTAGATTT GGCTAATGCA
TTTGCAACTT GGTTAGTCTC TCTAAAGATA TGTGATAACT ATCTGTCATC ACATATGTAA TGTCTGTTGG AGAATCTGAT
TCCAGTAGGG TTTTTTGATA CCGTCTTCCC CAAGCCGAAT TCAGACCATG GAACAATCCC CATAATTCAG CCAGAGTGAT
TGTGAAATCC CCCATTTTGA TGCCAAAAAT AAGCAGTTAT GAAATTGCCA AAGTGGTCCC TCAAACTCCC TTCACAACCA
GACATACTAT TTGCTCCACA ACTTATGCGT AGAATTTCAT ACCATATGTT GTGAGATTAT GTTTCTAGAA CCATTTTGAT
AATTTTTAAT CTATATAAGT GATTCAGGTG AGAGATGCAC AAAGATTGCA GTGTTAATTT TTGCTAACCA AGTTAGAAGT
AGTGTGAGTG TTACAGTAAG CCCTAATGAT GACTAGTATG TAATTATATC AATGCATGCT TGAAGTTAGT TTCTGTTTTG
GTGCTGAAAG GTATTCATTT TTCTTTGCTG GAAATTTTGA GGTTCACTTA ATGTGGTCAA AATTTGTTGG ATATTTAACG
ACTTAATGAT TTTAGTTCTC TAATTCTTCC TGCTTTGGTA TAAGATTAGG TTGATATGAA TATTAGGGAA GATGCAATGC
TCAAGATTGA TTTATGCCCC TGCTGTTCAT TTGTGTATCT TGGGTTTGTA ATGTTTCCCA TAAATTTAAC GAATTTTGAG
AGGACATTTT ATTGCTTATG TTTTATTAAC ACATTTGCCA TTGTTGAATA GTCACTGTCA ACCAGTATTG AAGGGGGAAC
CAAATGGTTG GTCAACAAAT TAAAAGGTTT GTATCATAAT GTTTATATGT ATTGCTCAAA CATTTGTGCA AGCATAGGCT
TTGTAGAGTT CTTTTAATTT AAACTCATAA TCCCAAGTAT ATAAATGCAT CAAAGTTTCA AAATATTCTC TTCGATTGCC
AAAGCCATTA TACATATTTC ATCAATCATA TATGTAACTA ATTTTTATTT GACCTGAATA CAAGGGGATT CTCCACGATG
AGTGAACTGG ACTAACATGG GAAGTTAGTA TTTTGAAATA TAAATCACTT TCAACTTTGT GTGTGTGTGT AGGCATGGAT
GAGTTTTGGT GGTACTCTAG TGTGAATAGG GATATATACT TGCACTGCTT TTTCTGAAGA GAACCAGATA CACTGAAAAG
GACTTCAAAA CATTCTAAAC TGAAATTAAT GTGACAAACA TGGATTGGAA GGTATTCATC GTCTCATCAT CATATATGAC
AAAGTCATCT TGTACAACAA ATCTTTTGAA TTTTGGTATT TGATCATTCT ATAGGTAAAG TAAGTTGTGG AAGCTAGTAG
GATATTTGTG TTTGATCTTT AGTACATTCA GATGACATTG AAATTATTAG CATCCCAATT TTACAAATCC TAAAACAACT
GTTAAGGCAT TCAAAGATGA TATATACATT CTTCTCCATC CATTGTCATC TCGCTTCCCA AACTTACCCT TCTCCCTTTT
GATTAACATT ACCCTCTTGA TGCTTCATAG GAAAGATGCA AAAGCCATTA ACGGAGTTAC TAAAGGAGTA TGATCTACCC
ATTGGAATGT TTCCTCGTGA TGCAACAAAC TACGAATTCA ATGAAGAAAC TGGGAAACTT GTTGTTTACA TTCCTCAAGT
GTGCGAAGTC GGCTACCGAG ATTCATCAGT GTTGCGGTTC TCCACTATTG TGAGTGGTTA TTTGGAGAAA GGAAAGCTAG
CAGAAATAGA GGGAATAAAG ACTAAGGTGC TGATCTGGGT AAAAGTAACC ACCATTTCAT CTGAGGGACC AAAGCTCCAC
TTCATGGCCG GCATGAAGAA GACAAGGAAA AGGGAAGCAT ATGAGGTTAC TAGAGATGGT ATAAATGTAG ATAAGTTCTA
ATATATTTAC AACAAGTTAC TCTTGTTCAG TAGTTTTACG GTTACTAAAA TAAGTTATCT GTTCTTGTGG ATCATTTTAT
TCTATTAGAT ATGAATGTAG TGAGTGAATT GGAATTTGGA ATTTAGTGGA ACCTCTTTGT TCCTGCTGGA TGTGAAGTGG
TTTCAGTTTT TACTTTTTGG GTTCATATGT GCTAGTGAAC ACCAATGTGG GTGTTTGGAT AACCATTTAA GTAAGAAAAA
TGATATTTAA AAAGAAATTC TTTGTAGTTT GTACCGTACC ATTTAATATG AAAGTACTTT TAGAAGGGTT TGTAATGGTA
ATCCAAACAT GACTGGAGGA TATTGTCAAA AAAATTAAAT TGGTAGATGA CTC

>Vigan.04G129600.01
TCCAAAAGCA ACAATAAAGT GAAAAGAACG TAGCAGAGGT TTGGTCAGAG ATTAGACTTC TCAGAATTTA TGTTGTGAAG
TTGTTTATTC TGAGAAGGAA GAGAGAAAAG AGAAGAGAAA AGAGAAGAAC TCAACTATGG ATGAGATATT GAACAAGGTG
GGGTCATACT GGTTCAGCCG CAAGGCCAGC AAGGAGTTTA ACTCTGTTGG AGATGATATC AACTCACTGT CAACCAGTAT
TGAAGGGGGA ACCAAATGGT TGGTCAACAA ATTAAAAGGA AAGATGCAAA AGCCATTAAC GGAGTTACTA AAGGAGTATG
ATCTACCCAT TGGAATGTTT CCTCGTGATG CAACAAACTA CGAATTCAAT GAAGAAACTG GGAAACTTGT TGTTTACATT
CCTCAAGTGT GCGAAGTCGG CTACCGAGAT TCATCAGTGT TGCGGTTCTC CACTATTGTG AGTGGTTATT TGGAGAAAGG
AAAGCTAGCA GAAATAGAGG GAATAAAGAC TAAGGTGCTG ATCTGGGTAA AAGTAACCAC CATTTCATCT GAGGGACCAA
AGCTCCACTT CATGGCCGGC ATGAAGAAGA CAAGGAAAAG GGAAGCATAT GAGGTTACTA GAGATGGTAT AAATGTAGAT
AAGTTCTAAT ATATTTACAA CAAGTTACTC TTGTTCAGTA GTTTTACGGT TACTAAAATA AGTTATCTGT TCTTGTGGAT
CATTTTATTC TATTAGATAT GAATGTAGTG AGTGAATTGG AATTTGGAAT TTAGTGGAAC CTCTTTGTTC CTGCTGGATG
TGAAGTGGTT TCAGTTTTTA CTTTTTGGGT TCATATGTGC TAGTGAACAC CAATGTGGGT GTTTGGATAA CCATTTAAGT
AAGAAAAATG ATATTTAAAA AGAAATTCTT TGTAGTTTGT ACCGTACCAT TTAATATGAA AGTACTTTTA GAAGGGTTTG
TAATGGTAAT CCAAACATGA CTGGAGGATA TTGTCAAAAA AATTAAATTG GTAGATGACT C

>Vigan.04G129600.01
ATGGATGAGA TATTGAACAA GGTGGGGTCA TACTGGTTCA GCCGCAAGGC CAGCAAGGAG TTTAACTCTG TTGGAGATGA
TATCAACTCA CTGTCAACCA GTATTGAAGG GGGAACCAAA TGGTTGGTCA ACAAATTAAA AGGAAAGATG CAAAAGCCAT
TAACGGAGTT ACTAAAGGAG TATGATCTAC CCATTGGAAT GTTTCCTCGT GATGCAACAA ACTACGAATT CAATGAAGAA
ACTGGGAAAC TTGTTGTTTA CATTCCTCAA GTGTGCGAAG TCGGCTACCG AGATTCATCA GTGTTGCGGT TCTCCACTAT
TGTGAGTGGT TATTTGGAGA AAGGAAAGCT AGCAGAAATA GAGGGAATAA AGACTAAGGT GCTGATCTGG GTAAAAGTAA
CCACCATTTC ATCTGAGGGA CCAAAGCTCC ACTTCATGGC CGGCATGAAG AAGACAAGGA AAAGGGAAGC ATATGAGGTT
ACTAGAGATG GTATAAATGT AGATAAGTTC TAA

>Vigan.04G129600.01
MDEILNKVGS YWFSRKASKE FNSVGDDINS LSTSIEGGTK WLVNKLKGKM QKPLTELLKE YDLPIGMFPR DATNYEFNEE
TGKLVVYIPQ VCEVGYRDSS VLRFSTIVSG YLEKGKLAEI EGIKTKVLIW VKVTTISSEG PKLHFMAGMK KTRKREAYEV
TRDGINVDKF *