GBrowse Details

Vigan.04G113600.01

Basic Information:
Name: Vigan.04G113600.01
Multiple alignment
Variant Information
Position: Chr04:12733691..12734668 (+ strand)
Length: 978
Functional Information:
Description: Similar to uncharacterized protein. [A2Z2P3, Oryza sativa subsp. indica]
InterPro: Protein of unknown function DUF599 (IPR006747)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.13,0.00,2.98,0.08,1.79,0.38,16.77,4.47
Arabidopsis thaliana homolog: AT5G43180.1
Automatic updates:
Name: NM_001250641 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527542 (LOC100527542), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:12733691..12733760 (+ strand)
Length: 70
Type: five_prime_UTR
Position: Chr04:12733761..12733925 (+ strand)
Length: 165
Type: CDS
Position: Chr04:12734007..12734519 (+ strand)
Length: 513
Type: CDS
Position: Chr04:12734520..12734668 (+ strand)
Length: 149
Type: three_prime_UTR

>Vigan.04G113600.01 class=Sequence position=Chr04:12733691..12734668 (+ strand)
AAAACACGCA TCTCATGTCT CGTTCATTCT TACCAAACTT TTTCATTTCT TCATCAAAAC AGGGAAAAAG ATGAGAGTGG
CTATTTGTTT GGACACCATT TTCATCCCTT TGAGTCTCCT CATCACACTG AGTTACCATG TCTATCTTTG CCACACCATC
AAGAACAATC CTTCGCGTAC AACTTACGGA ATCGACAAGC TCAAAAGAAC AACTTGGAGC CTTAACTTAA ATCAGGTAAG
TATTACAATT TCTTAACATA AATAATATAG TTGGAGTTCA ATGTTTATAA GATTTGATTG GCATATATAT GTGCAGGGTG
ATGCGAGCAA AGCTATGTTG ACAGTGCAAA GCTTGAGGAA CACTCTTATG TCTACAATAC TGACAGCTAC TATAACCATT
CTGATAAACT TGGGTTTGGC AGCTTTGAGC AACAACGGCT ACAATGCTAG CCATCTCTTT AGCAGTGGAT TTTTCGGTTC
TAAGTCAGAT AAAACGTTCG TTTTGAAGTA TGGATCAACA TCAATTTGTT TGGTGATGAG CTTCATGTTC AGTTCGATGG
CGATAGGGTT TCTGATCGAT GCGAATTTTC TGATGAATGC GTACGGGGAG TTTTTGTCAG GAGGGTACAC ACACACCATA
TTAGAAAGAG GGTTCACCTT AGCTCTTGTG GGAAGTAGGG TGCTCTGTGT TGCTGTTCCT TTGATGCTAT GGATGCTGGG
TCCAGTTCCA GTACTCATGG CTTCCTTGGT CTTGGTTTTT GTCCTTCATG AGTTGGACTT TGTCTGCAAA TTTCCTCACA
AACATACCCA ATCTATCATT GCAAAATAGC CCTCCTAAAA CAATCTCTTT TATCATAATA TCAAATTTGT TTTTTATTTA
TATATTATAA TTTATTTTTA TGTTATATTT AGTCACTTTC ATAAACAGAT TTATATTAAA ATATCCAAAC AGTGACCAGA
CTCATCTTTT ATTAGCCA

>Vigan.04G113600.01
AAAACACGCA TCTCATGTCT CGTTCATTCT TACCAAACTT TTTCATTTCT TCATCAAAAC AGGGAAAAAG ATGAGAGTGG
CTATTTGTTT GGACACCATT TTCATCCCTT TGAGTCTCCT CATCACACTG AGTTACCATG TCTATCTTTG CCACACCATC
AAGAACAATC CTTCGCGTAC AACTTACGGA ATCGACAAGC TCAAAAGAAC AACTTGGAGC CTTAACTTAA ATCAGGGTGA
TGCGAGCAAA GCTATGTTGA CAGTGCAAAG CTTGAGGAAC ACTCTTATGT CTACAATACT GACAGCTACT ATAACCATTC
TGATAAACTT GGGTTTGGCA GCTTTGAGCA ACAACGGCTA CAATGCTAGC CATCTCTTTA GCAGTGGATT TTTCGGTTCT
AAGTCAGATA AAACGTTCGT TTTGAAGTAT GGATCAACAT CAATTTGTTT GGTGATGAGC TTCATGTTCA GTTCGATGGC
GATAGGGTTT CTGATCGATG CGAATTTTCT GATGAATGCG TACGGGGAGT TTTTGTCAGG AGGGTACACA CACACCATAT
TAGAAAGAGG GTTCACCTTA GCTCTTGTGG GAAGTAGGGT GCTCTGTGTT GCTGTTCCTT TGATGCTATG GATGCTGGGT
CCAGTTCCAG TACTCATGGC TTCCTTGGTC TTGGTTTTTG TCCTTCATGA GTTGGACTTT GTCTGCAAAT TTCCTCACAA
ACATACCCAA TCTATCATTG CAAAATAGCC CTCCTAAAAC AATCTCTTTT ATCATAATAT CAAATTTGTT TTTTATTTAT
ATATTATAAT TTATTTTTAT GTTATATTTA GTCACTTTCA TAAACAGATT TATATTAAAA TATCCAAACA GTGACCAGAC
TCATCTTTTA TTAGCCA

>Vigan.04G113600.01
ATGAGAGTGG CTATTTGTTT GGACACCATT TTCATCCCTT TGAGTCTCCT CATCACACTG AGTTACCATG TCTATCTTTG
CCACACCATC AAGAACAATC CTTCGCGTAC AACTTACGGA ATCGACAAGC TCAAAAGAAC AACTTGGAGC CTTAACTTAA
ATCAGGGTGA TGCGAGCAAA GCTATGTTGA CAGTGCAAAG CTTGAGGAAC ACTCTTATGT CTACAATACT GACAGCTACT
ATAACCATTC TGATAAACTT GGGTTTGGCA GCTTTGAGCA ACAACGGCTA CAATGCTAGC CATCTCTTTA GCAGTGGATT
TTTCGGTTCT AAGTCAGATA AAACGTTCGT TTTGAAGTAT GGATCAACAT CAATTTGTTT GGTGATGAGC TTCATGTTCA
GTTCGATGGC GATAGGGTTT CTGATCGATG CGAATTTTCT GATGAATGCG TACGGGGAGT TTTTGTCAGG AGGGTACACA
CACACCATAT TAGAAAGAGG GTTCACCTTA GCTCTTGTGG GAAGTAGGGT GCTCTGTGTT GCTGTTCCTT TGATGCTATG
GATGCTGGGT CCAGTTCCAG TACTCATGGC TTCCTTGGTC TTGGTTTTTG TCCTTCATGA GTTGGACTTT GTCTGCAAAT
TTCCTCACAA ACATACCCAA TCTATCATTG CAAAATAG

>Vigan.04G113600.01
MRVAICLDTI FIPLSLLITL SYHVYLCHTI KNNPSRTTYG IDKLKRTTWS LNLNQGDASK AMLTVQSLRN TLMSTILTAT
ITILINLGLA ALSNNGYNAS HLFSSGFFGS KSDKTFVLKY GSTSICLVMS FMFSSMAIGF LIDANFLMNA YGEFLSGGYT
HTILERGFTL ALVGSRVLCV AVPLMLWMLG PVPVLMASLV LVFVLHELDF VCKFPHKHTQ SIIAK*