GBrowse Details

Vigan.04G105100.01

Basic Information:
Name: Vigan.04G105100.01
Multiple alignment
Variant Information
Position: Chr04:11304248..11307814 (- strand)
Length: 3567
Functional Information:
Description: Similar to Uncharacterized protein. [I1L6T8, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: 4-hydroxy-tetrahydrodipicolinate synthase (GO:0008840)
Molecular Function: lyase activity (GO:0016829)
InterPro: DapA-like (IPR002220)
Dihydrodipicolinate synthase (4-hydroxy-tetrahydrodipicolinate synthase), DapA (IPR005263)
Aldolase-type TIM barrel (IPR013785)
Dihydrodipicolinate synthetase, conserved site (IPR020624)
Dihydrodipicolinate synthetase, active site (IPR020625)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:26.75,39.47,26.21,23.95,28.80,110.54 ,33.17,23.93
Arabidopsis thaliana homolog: AT2G45440.1, AT3G60880.2
Structure :
Position: Chr04:11304248..11304478 (- strand)
Length: 231
Type: three_prime_UTR
Position: Chr04:11304479..11305403 (- strand)
Length: 925
Type: CDS
Position: Chr04:11305884..11305964 (- strand)
Length: 81
Type: CDS
Position: Chr04:11307529..11307611 (- strand)
Length: 83
Type: CDS
Position: Chr04:11307612..11307814 (- strand)
Length: 203
Type: five_prime_UTR

>Vigan.04G105100.01 class=Sequence position=Chr04:11304248..11307814 (- strand)
GTTTAAGAAG TGTGGAAGAG TAGACAGGTG CAGTGGTGTG TGTCATTTTC CGTTTCGCAC ATAGAAAAAA GCCAAAGTAC
TCTTCGCCGC CATTTTCTAC TCTCACTGAA GTCATCTTCT TCCCATTCCT CTTCTAAGAT CTCCCTTCCA ACGACACCGT
TTTGATCTTC CCATTCGGAT CTTCTTCTCC AGTTTCTCAA ATCATGGCTA CACTCAAAAC CCTTTGCTTC AGAGCTGCCA
CCTTCCCCGA TTGCCCCTCC AATGTCACCA ATAATAAAAA CACCAGGTTC ATTTTCCTCA TCAATTTTAA TTATTATTAG
TGCTGTTGTT GTTGTTGTTT GTTTTCTCGT TTTCGGATTT TGTAATTTCG AAATTGGAGT TCCAAGGATT ATTGATGTAT
TGGATGGTTT CTGAAATCTG ACTAAAGGCA GTGTTGTTTG TGTAGGTTGT TCGTTACTTG GTTATGTGTT AACGATGGGT
TATTAGGTTT GATTCGCTGT TTGGTGGATT TTTTAAATTG TTTATCTGAA GTGAGAAAGC CTCTAAGGGG CATACATGGG
TAAAGGATAT TGGCATTTTG ATTTTTCCGG GTTAATTGAG TTTGTGAGGC ACTTGAATTT GAATCAACAC TGGATTGAGT
TACCCTTTGC ACTCTAGTGT GTAGTACATT CAAATATGTT TTGTCGCTTT GTGCGTTTTA GCGGCACAAA AACTTTGATG
AGTTTTAAAA ACCTGCCTTG ATTCCTTGTT CAAAACATTC TATCTCTGTT TTCAGTTCTG AATTCTGATT GTCCTGTCTT
TTTTGGTTTA TTTTTACCAT CATTTGTCAA CCTCAAAGCA GTTCTTTTAT TTGTAGCACC ATCCTCTTGG AGACTAACAC
TTATTTCATT TCTAGATGTT TGTTATTGTT GTGTTTAGCT CTAGTGAGAG GGAAAAGAAA TGAGAACATA TATGATGGAT
TATGTGTGTC AACTGCATAG CGGAGAATAT TATTTATATA TTGAGACTTA AAGAGTCATA AATAAATACA AGGATTTACA
ATTACAATAC ATAATAACAC TGAAGATGAA ATCAGCACAG CACTCGATTT ATCTTTCACA TAGTGTATAA TATGTTCTGT
TTTTGAGCAT TTATATGTGT TACATAAATT ATTTAATCTG TATTTATAGC ATTCAGAATA GTGGCCGTAC CACTGACAGT
TCCTTTTGGT TATAGCCGCA ATTCCTTGAT AACCATGTGT TAGAGGGTTT TTTTTACTGT AAAGGATCGC CCCTTTTTAA
TACCGTTTTT CTGTTGTTTA TTTGATTATT GTGTTTCTGC AATAATAGCC TTTTAGTCTA GTCATATTTA CTACTGATTG
ATTATTATGA GGAGTACAAT GAGATTTGTA GAAGTAAGAC GGAAATGCAA TAGGACTCTC TTGTTCTCTT CTTTAATGTT
CGATTTCTTG AATGTTTCGT CCCTTTCTAC TTGTAAACTT GACTAAACAG TTATGCCTCG TGGTTACCTC TTTCCAGTTC
TTCATGGGAA ATAATGTTTC TTCGTTTAGG ATAATGAAAG ATAGTAAGAT GATAAACTAG AGTGAAAAGG ACTCTCTGTA
CATTCACCCC ATAAGTGTGC TCCATGTCTC TGCCTCCTTA CTTTTGGGTG TCAGCTTTTT ACTTTTTAAT CAAGTGTTTA
CTCTTTCCAA TTTCAAATCA GTATTCTATA TTTGTAGTTG CAATATGGTT TTCTCTTTGT CACATGCATG TATGTACGAC
TGTGTGTATC GGTGCCGATT ACGTTTTGAA AAATACCACT CTTTCCAAAT TTTGCTACGT TTGATGTTAA ATAATTTCTA
TATTAATCAG GAGCTCAAAC TGGAAGCCTC CACAAGCAGC TGTGAAACCT AGTTTGCACC TCCCAATGCG CAGCTTTGAG
TTGAAGAATA GGTGGGTTTG AAGTTTACTG TTATAAATCC ATTCAATTTT CTACTAAATT ATATATACAT TTGTTTTCAT
ATCTTTTCAT TTCTGAAACT GTTTTTATCA TGTGTACATG TGCGTATTGT CTAAATTAGG TGGGAACTGT AGGATGCATG
CTCTGGGTAG GATTTCTGGA CGAGACACAG ATGATGTGAT GCATCTAGAG CTTTAAGCAA TGTTCTCTCT CACTAATTTG
CACTTTGAAC TTAATTTGCA CTTCTTATCC AATCCGTCCT TTGCTTAGCA AGGGTTTTAT GTCATCTATA TACTTGATAT
GTATATTTGT ACTGAAATTT TTTTTAAATC TATTTACACG GCCATATATA TTTTTATAAT GAAACTATAT TCGTACATAT
TTAAATGTAA TATAAAATTT TTATTTTTGG CTTTCGGTTT TCATTGCTGC TTATTTGGGC TACTGCTTAT TTTAATGTAT
TGCATTTACA GGACTTCCCC AGAGGACATA AAGTGTCTGA GGTTGATAAC TGCCATCAAA ACTCCATACC TACCTGATGG
GCGATTTGAT CTTGAAGCGT ACGATGACTT GGTGAATATG CAGATTGGAG AAGGGGTCGA AGGTGTTATT GTTGGTGGGA
CAACTGGTGA AGGACAATTA ATGAGCTGGG AGGAGCACAT AATGCTCATT GCTCATACAG TTAACTGTTT TGGTGGGAAA
GTTAAGGTTA TTGGAAATAC TGGAAGCAAC TCCACCAGGG AAGCAATTCA TGCCACTGAG CAGGGTTTTG CTGTTGGAAT
GCATGCTGCC CTTCACATAA ACCCCTACTA CGGAAAAACC TCGTTGGATG GCATGGTTGC TCACTTTCAA AGTGTGCTTC
CGATGGGACC CACTATAATC TATAATGTGC CTTCACGGAC TGGTCAAGAC ATTCCTCCAC ATGTAATTCA AACCTTAGCT
GAAAGTTCTA ACTTAGCTGG TGTCAAGGAG TGTGTTGGAA ATGATCGGAT CAAGCAGTAT ACAGACAATG ACATTGTTGT
GTGGAGTGGA AATGATGATC AATGCCATGA TGCTAGATGG GATTATGGGG CTACTGGAGT GATATCTGTT ACAAGCAACC
TGGTTCCTGG TCTAATGCGG GAACTGATGT ATGGTTTAAA TCCTAGGCTA AATTCTAAGC TCTTACCTCT GATTGACTGG
CTTTTCCACA TGCCAAACCC CATTGGGTTG AACACTGCTC TTGCTCAACT TGGGGTTGTC AGGCCCGTTT TTAGGCTACC
ATTTGTACCT CTCCCTTTTG AGAAAAGGAT AGAATTTGCC AATATAGTGA AGGCAATTGG CCGAGAGCAT TTTGTTGGAA
ATAAAGATGT TGAGGTTCTT GATGACGAAG ACTTTTTCTT GGTCAGTCGT TATTAAATTA TCTTGTAGGT TTATTGTATC
CTCCTTTCTG GGGGGTTTTC CAAACATCAA ATCATGATGA GTCTGCTGTA GTGAATTGAA GTGATTACCT AGTTTCTTTT
TACTGGCTAC TCTGTAGTTG GGAACTGTTT CAAATCTGTG TAGTTTGAAT TTATGTGCTA CTGCATATTC TATTTATCGT
GTTTTGAGCA GTGAAACATA ACAACGATGA ATCAATCCCT AATTTTC

>Vigan.04G105100.01
GTTTAAGAAG TGTGGAAGAG TAGACAGGTG CAGTGGTGTG TGTCATTTTC CGTTTCGCAC ATAGAAAAAA GCCAAAGTAC
TCTTCGCCGC CATTTTCTAC TCTCACTGAA GTCATCTTCT TCCCATTCCT CTTCTAAGAT CTCCCTTCCA ACGACACCGT
TTTGATCTTC CCATTCGGAT CTTCTTCTCC AGTTTCTCAA ATCATGGCTA CACTCAAAAC CCTTTGCTTC AGAGCTGCCA
CCTTCCCCGA TTGCCCCTCC AATGTCACCA ATAATAAAAA CACCAGGAGC TCAAACTGGA AGCCTCCACA AGCAGCTGTG
AAACCTAGTT TGCACCTCCC AATGCGCAGC TTTGAGTTGA AGAATAGGAC TTCCCCAGAG GACATAAAGT GTCTGAGGTT
GATAACTGCC ATCAAAACTC CATACCTACC TGATGGGCGA TTTGATCTTG AAGCGTACGA TGACTTGGTG AATATGCAGA
TTGGAGAAGG GGTCGAAGGT GTTATTGTTG GTGGGACAAC TGGTGAAGGA CAATTAATGA GCTGGGAGGA GCACATAATG
CTCATTGCTC ATACAGTTAA CTGTTTTGGT GGGAAAGTTA AGGTTATTGG AAATACTGGA AGCAACTCCA CCAGGGAAGC
AATTCATGCC ACTGAGCAGG GTTTTGCTGT TGGAATGCAT GCTGCCCTTC ACATAAACCC CTACTACGGA AAAACCTCGT
TGGATGGCAT GGTTGCTCAC TTTCAAAGTG TGCTTCCGAT GGGACCCACT ATAATCTATA ATGTGCCTTC ACGGACTGGT
CAAGACATTC CTCCACATGT AATTCAAACC TTAGCTGAAA GTTCTAACTT AGCTGGTGTC AAGGAGTGTG TTGGAAATGA
TCGGATCAAG CAGTATACAG ACAATGACAT TGTTGTGTGG AGTGGAAATG ATGATCAATG CCATGATGCT AGATGGGATT
ATGGGGCTAC TGGAGTGATA TCTGTTACAA GCAACCTGGT TCCTGGTCTA ATGCGGGAAC TGATGTATGG TTTAAATCCT
AGGCTAAATT CTAAGCTCTT ACCTCTGATT GACTGGCTTT TCCACATGCC AAACCCCATT GGGTTGAACA CTGCTCTTGC
TCAACTTGGG GTTGTCAGGC CCGTTTTTAG GCTACCATTT GTACCTCTCC CTTTTGAGAA AAGGATAGAA TTTGCCAATA
TAGTGAAGGC AATTGGCCGA GAGCATTTTG TTGGAAATAA AGATGTTGAG GTTCTTGATG ACGAAGACTT TTTCTTGGTC
AGTCGTTATT AAATTATCTT GTAGGTTTAT TGTATCCTCC TTTCTGGGGG GTTTTCCAAA CATCAAATCA TGATGAGTCT
GCTGTAGTGA ATTGAAGTGA TTACCTAGTT TCTTTTTACT GGCTACTCTG TAGTTGGGAA CTGTTTCAAA TCTGTGTAGT
TTGAATTTAT GTGCTACTGC ATATTCTATT TATCGTGTTT TGAGCAGTGA AACATAACAA CGATGAATCA ATCCCTAATT
TTC

>Vigan.04G105100.01
ATGGCTACAC TCAAAACCCT TTGCTTCAGA GCTGCCACCT TCCCCGATTG CCCCTCCAAT GTCACCAATA ATAAAAACAC
CAGGAGCTCA AACTGGAAGC CTCCACAAGC AGCTGTGAAA CCTAGTTTGC ACCTCCCAAT GCGCAGCTTT GAGTTGAAGA
ATAGGACTTC CCCAGAGGAC ATAAAGTGTC TGAGGTTGAT AACTGCCATC AAAACTCCAT ACCTACCTGA TGGGCGATTT
GATCTTGAAG CGTACGATGA CTTGGTGAAT ATGCAGATTG GAGAAGGGGT CGAAGGTGTT ATTGTTGGTG GGACAACTGG
TGAAGGACAA TTAATGAGCT GGGAGGAGCA CATAATGCTC ATTGCTCATA CAGTTAACTG TTTTGGTGGG AAAGTTAAGG
TTATTGGAAA TACTGGAAGC AACTCCACCA GGGAAGCAAT TCATGCCACT GAGCAGGGTT TTGCTGTTGG AATGCATGCT
GCCCTTCACA TAAACCCCTA CTACGGAAAA ACCTCGTTGG ATGGCATGGT TGCTCACTTT CAAAGTGTGC TTCCGATGGG
ACCCACTATA ATCTATAATG TGCCTTCACG GACTGGTCAA GACATTCCTC CACATGTAAT TCAAACCTTA GCTGAAAGTT
CTAACTTAGC TGGTGTCAAG GAGTGTGTTG GAAATGATCG GATCAAGCAG TATACAGACA ATGACATTGT TGTGTGGAGT
GGAAATGATG ATCAATGCCA TGATGCTAGA TGGGATTATG GGGCTACTGG AGTGATATCT GTTACAAGCA ACCTGGTTCC
TGGTCTAATG CGGGAACTGA TGTATGGTTT AAATCCTAGG CTAAATTCTA AGCTCTTACC TCTGATTGAC TGGCTTTTCC
ACATGCCAAA CCCCATTGGG TTGAACACTG CTCTTGCTCA ACTTGGGGTT GTCAGGCCCG TTTTTAGGCT ACCATTTGTA
CCTCTCCCTT TTGAGAAAAG GATAGAATTT GCCAATATAG TGAAGGCAAT TGGCCGAGAG CATTTTGTTG GAAATAAAGA
TGTTGAGGTT CTTGATGACG AAGACTTTTT CTTGGTCAGT CGTTATTAA

>Vigan.04G105100.01
MATLKTLCFR AATFPDCPSN VTNNKNTRSS NWKPPQAAVK PSLHLPMRSF ELKNRTSPED IKCLRLITAI KTPYLPDGRF
DLEAYDDLVN MQIGEGVEGV IVGGTTGEGQ LMSWEEHIML IAHTVNCFGG KVKVIGNTGS NSTREAIHAT EQGFAVGMHA
ALHINPYYGK TSLDGMVAHF QSVLPMGPTI IYNVPSRTGQ DIPPHVIQTL AESSNLAGVK ECVGNDRIKQ YTDNDIVVWS
GNDDQCHDAR WDYGATGVIS VTSNLVPGLM RELMYGLNPR LNSKLLPLID WLFHMPNPIG LNTALAQLGV VRPVFRLPFV
PLPFEKRIEF ANIVKAIGRE HFVGNKDVEV LDDEDFFLVS RY*