GBrowse Details

Vigan.04G086100.01

Basic Information:
Name: Vigan.04G086100.01
Multiple alignment
Variant Information
Position: Chr04:8875529..8878377 (+ strand)
Length: 2849
Functional Information:
Description: Similar to uncharacterized LOC101223085 isoform 2. [XP_004155823.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.86,3.69,3.24,5.19,7.76,2.08,2.78,5.00
Arabidopsis thaliana homolog: AT4G00525.1
Automatic updates:
Name: NM_001248773 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526900 (LOC100526900), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:8875529..8875699 (+ strand)
Length: 171
Type: five_prime_UTR
Position: Chr04:8875700..8875877 (+ strand)
Length: 178
Type: CDS
Position: Chr04:8877687..8877910 (+ strand)
Length: 224
Type: CDS
Position: Chr04:8877911..8878377 (+ strand)
Length: 467
Type: three_prime_UTR

>Vigan.04G086100.01 class=Sequence position=Chr04:8875529..8878377 (+ strand)
GTTTCCCCTG TGCACCTTAA CACTACATAT TCATGGTAGA TTCAAAATTT GAAAGTACAC CAGAAAAAGT CGTAAACCCA
CTAAACAGCC TTCTTATTCA CACTACTTCT CTGCTTTATC TTCTCCAACG TGAACACACC AACGCAAAAA GTATTCCAAT
TTCTACAAAC AATGGCTTCC GAAGCGGTGG AAACTCACGA AGCTGAAGAA AAAGCGGAAG TGGAGAAGTT GGAATCTGAT
TTGAAGCAAA TGGCGCAGAA GATTCTCGAA TACCGGACAA CGCTTCCAGA TCAGCTCAGC TCCACACTCC GTTCGATTCT
CGATGCCCAC AGACCCTATC TCCCTCTGGG TACATCTCTT TCTAGGGTTT TTCTTTTCAT GGCTCTAAAT TTGGGAAATT
TGGTGTGGAC TAAACCTATG GGCTCATTTT GAATTGTTTT ATGCTCCTCA AGATGGATAG AGTTTATTTG GTGTTCTGTG
GTTTTAGTTA GTTTCTTCAA TTTGTGTTTT TTGGGGATTT AGGAAAGATG GCCTCTTTTT CTTGTCTGGG CATGTGAGTT
TTCAGTAATG TGATTTGAAA TGGGTGCTGT TTGGATCTTG TTGGTAATGT AGGTTGCTTC AATATTTTTA ATTCTTAACT
GAGTTTTAGA GCTGACTTTC ATTTCTCTCA TATGTCCCTA CTTATTTGTT GTCATTTTAT TGAGGTTATT ACTGGGCACA
TATTAGTGAA ACTGAAATCT GAAATTCGGT CATGGTAGGA CAAACTTTTC CGTAAGCACA TGTGGGAGAA GGAGATAAGA
GAAAGTTGAA TTGAATTTTT CTCATAAGTG GTTTATTTGG ATAAATTTTT CAATAAACAC TAGTAGGAGA ATAAAACAAA
AACAAATGGT GACATAAGTT TATCTGTAAG TTAAAATTAT TTTATAAAGT TGTTACAAAC AATCTTTTAG AAAAATTAAT
ATAAGAGAAT TTCTACAAAT TATTTATGCA TAAGCTAAGG GAAGTTTATG TACCTTTTAC CTTTTATTTT CTTTTCTTAA
AAGTGTTTAT GGAGAAATTT ATCCAAACAA GTTTAAAACA AGCTTTTGCA CTTACCTTTT GTGGAAGATC TGATTTAACT
TTTCCTGAAG CTAAGGTACA TTCATTGATT TTCTTTTCCT ATATGTGTTA ATAAAGAAGT TTATTCAAAT AAGGAATTAG
TGTATGTAAG TTCTAAGTTA GTACTTGGTA ATGCAAGTAT GTTGATGTGC GTAGATGAAT GAAAAATGTA GCTTGTTTGG
TATTAGATGC ATGATACTTC TGGTTTGGTT TTGGAGGAAG GAAAAGTAAA AGTTTTACTG ATTTTGATCA TCTGTGTTTT
GGTAATGTCA TGTTGTTTGC GATGAAAAAA ATTGTTGTGC ATTGTGCAAT GAAACTAGCT GCTTATTTAC TGTGAGGTGC
TATAATTTTC TTAGAACCGA ACAGAAAAAC AAAAAGATGA TGACTTAGTA ATTATTACTT GGTTGATCTA TTAGCAATAA
AGAGAAATTG TCATTTCAAT CTTATGTATA AAAAATAAAA TTGTTTGAAT CATCTTTCAT TTTTCTAAAA TTAATATTAC
TTTTTTGTTG GCATCATCAG CTTGTCTGAG TATTATGTTC TTTTACCTGC CTGGCTTCAT TTTCCAATAG GTTTTTTGAG
TAATGAGATG TAAGTTTAGA ATTTTCTGTG CTGAAAACTG AATTTGGCCT ATAGACATCG CTAACATTGT GATGATCAAA
CTTAATTAAA ATTCAAAATG CATTTTGAAT AGTGACAGGT GGACGGAAAC AAATGTTGTT TTCCAAATAT ATGAAGAATT
CACCATTTAC AGATGACATT TTGTTAAATT GAGCATAAAG CTTGTTTTGT ATTCCCTTGA TTGGTAGTGT CTTGTTCATC
TTTCCTTCAT TGTTTTCTTG ACTTAGATCT AGTAGTTGTT TTTCCATGGG TATTGAAGGA CTATATGTCA CCCGGTGCTA
GTTAAAGGTA GATGACAGTT TCAGTCTTTA AGCTATGATC CTTGTACTTT GGTGGTTAAG GCTTCTTCTA TATATTTTGT
TTATTTGCTT ATCTCTTTCG AGCTGCAATG TTTTTTTGTT AGTGTATTTC ACTCGTTGAT CGGTTTTATA TTGTCTAGGT
GCATCAGAAC AAAACATGTC TAGAGAAGAA ACTTCATCTG CTCCGGAAGA CCCAGAGACT GCCAAGAAAC TGAAATTGCT
GAATGAAAAG ATCTCGAGCA ATTGCTCTGC TATGCCAATT GTTTTGAAAA GGATGAAAGA TTGCATTACC AGAATTGAAA
AGTTTGATTC ATACAAAGAT TCAATGATAC ATCCGGCCTT CAAAAGGAAG AAGACTGGAT AGCCTTGATG TAACTTACAG
TAGTTATTTA TCTAAACACA TAAGCAAACA AGTGATCCAG CATTGACCAA CTTGGATTTG TTCGATGAAG CCACCTCTCT
ACCATTTTCC TTATTCTGCA AGTGGGAAGA ATGATTCGAT GCTGATGTAT AATGTATTAC ATTGTTTGGT CTTTTGTGAT
ATTTTGAAAA GCAACCCTTG CCAGTAGGAC AGGGAGTGAG ACAGTGAAGG AAAAGACAGG ATGTTGTATA GTTCTTGTCG
CTGTGTATCG GCTTCATCAT TAATTGTATG TAAGCTTTTA CATTTGCTTA ACTTGTGATG GCTTTAGGCT TTAGCATATT
GTATGTAAAA AATTTCTTGC AATGAACTTA TTCTTTGTCC TATTTTAAGA TTGATCATTT GAACTGTTAG GCACCTCAAA
TATACCCAAC AACTAGGGTG ATATTTGCTA TGTACAAACT TGTTAGGCA

>Vigan.04G086100.01
GTTTCCCCTG TGCACCTTAA CACTACATAT TCATGGTAGA TTCAAAATTT GAAAGTACAC CAGAAAAAGT CGTAAACCCA
CTAAACAGCC TTCTTATTCA CACTACTTCT CTGCTTTATC TTCTCCAACG TGAACACACC AACGCAAAAA GTATTCCAAT
TTCTACAAAC AATGGCTTCC GAAGCGGTGG AAACTCACGA AGCTGAAGAA AAAGCGGAAG TGGAGAAGTT GGAATCTGAT
TTGAAGCAAA TGGCGCAGAA GATTCTCGAA TACCGGACAA CGCTTCCAGA TCAGCTCAGC TCCACACTCC GTTCGATTCT
CGATGCCCAC AGACCCTATC TCCCTCTGGG TGCATCAGAA CAAAACATGT CTAGAGAAGA AACTTCATCT GCTCCGGAAG
ACCCAGAGAC TGCCAAGAAA CTGAAATTGC TGAATGAAAA GATCTCGAGC AATTGCTCTG CTATGCCAAT TGTTTTGAAA
AGGATGAAAG ATTGCATTAC CAGAATTGAA AAGTTTGATT CATACAAAGA TTCAATGATA CATCCGGCCT TCAAAAGGAA
GAAGACTGGA TAGCCTTGAT GTAACTTACA GTAGTTATTT ATCTAAACAC ATAAGCAAAC AAGTGATCCA GCATTGACCA
ACTTGGATTT GTTCGATGAA GCCACCTCTC TACCATTTTC CTTATTCTGC AAGTGGGAAG AATGATTCGA TGCTGATGTA
TAATGTATTA CATTGTTTGG TCTTTTGTGA TATTTTGAAA AGCAACCCTT GCCAGTAGGA CAGGGAGTGA GACAGTGAAG
GAAAAGACAG GATGTTGTAT AGTTCTTGTC GCTGTGTATC GGCTTCATCA TTAATTGTAT GTAAGCTTTT ACATTTGCTT
AACTTGTGAT GGCTTTAGGC TTTAGCATAT TGTATGTAAA AAATTTCTTG CAATGAACTT ATTCTTTGTC CTATTTTAAG
ATTGATCATT TGAACTGTTA GGCACCTCAA ATATACCCAA CAACTAGGGT GATATTTGCT ATGTACAAAC TTGTTAGGCA

>Vigan.04G086100.01
ATGGCTTCCG AAGCGGTGGA AACTCACGAA GCTGAAGAAA AAGCGGAAGT GGAGAAGTTG GAATCTGATT TGAAGCAAAT
GGCGCAGAAG ATTCTCGAAT ACCGGACAAC GCTTCCAGAT CAGCTCAGCT CCACACTCCG TTCGATTCTC GATGCCCACA
GACCCTATCT CCCTCTGGGT GCATCAGAAC AAAACATGTC TAGAGAAGAA ACTTCATCTG CTCCGGAAGA CCCAGAGACT
GCCAAGAAAC TGAAATTGCT GAATGAAAAG ATCTCGAGCA ATTGCTCTGC TATGCCAATT GTTTTGAAAA GGATGAAAGA
TTGCATTACC AGAATTGAAA AGTTTGATTC ATACAAAGAT TCAATGATAC ATCCGGCCTT CAAAAGGAAG AAGACTGGAT
AG

>Vigan.04G086100.01
MASEAVETHE AEEKAEVEKL ESDLKQMAQK ILEYRTTLPD QLSSTLRSIL DAHRPYLPLG ASEQNMSREE TSSAPEDPET
AKKLKLLNEK ISSNCSAMPI VLKRMKDCIT RIEKFDSYKD SMIHPAFKRK KTG*