GBrowse Details

Vigan.04G000900.01

Basic Information:
Name: Vigan.04G000900.01
Multiple alignment
Variant Information
Position: Chr04:68967..71104 (+ strand)
Length: 2138
Functional Information:
Description: Similar to somatic embryogenesis receptor kinase 1-like. [XP_004491677.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Leucine-rich repeat (IPR001611)
Leucine-rich repeat-containing N-terminal, type 2 (IPR013210)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.36,0.03,14.07,12.58,16.22,9.04,34.65,27.48
Automatic updates:
Name: NM_001253069 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100778819), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:68967..69171 (+ strand)
Length: 205
Type: five_prime_UTR
Position: Chr04:69172..69262 (+ strand)
Length: 91
Type: CDS
Position: Chr04:69371..69503 (+ strand)
Length: 133
Type: CDS
Position: Chr04:69665..69736 (+ strand)
Length: 72
Type: CDS
Position: Chr04:69890..70033 (+ strand)
Length: 144
Type: CDS
Position: Chr04:70105..70176 (+ strand)
Length: 72
Type: CDS
Position: Chr04:70280..70351 (+ strand)
Length: 72
Type: CDS
Position: Chr04:70768..70846 (+ strand)
Length: 79
Type: CDS
Position: Chr04:70847..71104 (+ strand)
Length: 258
Type: three_prime_UTR

>Vigan.04G000900.01 class=Sequence position=Chr04:68967..71104 (+ strand)
TAAAATTCTC CATATATCTG TGATTCCATT CCAAAAGCAT AATTGCATTA AAGAAAGAGG AAGATTTGGT CTCTATTACA
TGTTTTTGTT ATTAGTATTA TTACTATTAG GCGCACTTCG ACTACAAATA GAACCATCAA TTGGTGTCAG CCGGTGTGAG
GGGTGAGGCT CTAAAATCTC TACCAACTTT CAGGGCTGCT ACTTCATGGA GAGGAGCATG AGGGTACCTT TTTACGTTCT
TGCAATTTTT CTTCTCCTAT CAGATCCTTT TGCTGTTATA AATGCAAACT CTGAAGGTAA ACCCACCCTT TTGTATGTAT
GCGTTCCATA TGTATCCAGC CACAAATTTT GAAGAATCTT GTCACAATAG TATATTCTGC TTTTTTGAAC TTGAAAACGA
ACAGGTGATG CTCTGTTCGC ATTCAGAAGA GCTGTGAAAG ACCCAAATAA CGTTCTGCAG AGCTGGGATC CAACTTTGGT
GGATCCTTGT ACATGGTTCC ATGTTACCTG TGATGATGAT AAGAGAGTAA CCCGACTGTA ATTAACTCCA TCTTGTCTTT
TCAGTTTCTC ACGTTTTTAT TTGGAATGTA TTATTTGTAT TTTTTATTTT ATTATGTATT CTTTGTAACA TGTTTGTTTG
ATAAGTGTTG ATTATTTCAC TGGGTTGGGT TAAGTCTGAT AATTGCGTAC TCATGCAGGG ACCTCGGACA TGCAAAACTG
TCTGGTCATT TGGTTCCAGA ACTAGGGAGG CTCCAGCGCC TTCAGTTTCT GTAAGCGCCG TAGCGAAGTT TGTATTTATC
TATTTTCTGA AAATGTCTGA CAGACATCAC TAAAGATCAA ATATGAGGGT TTATTTCTCC AAAGTTCCTT TTTGAATGTG
TTATGCAAAG ACAGAACGTA AGATTTGGTT TGCCAATGTG CAGAGAACTA TACAAGAATG ATTTGAAGGG TCCAATACCA
AAGGAACTTG GAGACCTCAA GAACCTGGTT AGCTTGGGTC TCTACCAGAA TAACCTCACT GGCTCCATTC CCGCCAGCCT
GTCCAACCTC TCCAACATCA AATTCTTGTA AGTTAATTAA AATAAATAGC AAGTGGACCG TTCATTAAGC ATAACCCTTT
TATGATACAA TATTACAGGC GGCTCAACAG CAACATGCTC ACTGGAAGAA TACCGAGGGA ACTCACTAAG TTGGGAAACC
TCAAGATCTT GTGAGTCTCT CTGTCCTACA CTTTTCAATA TCATACATCT TTTCATTCTG CTCCGTCAAT TCTAATTTCT
CACGTTTAAA TTCGTTTTTC TTATGTTATG CAGAGACCTA TCAAACAACG ATCTGTGTGG TACTTTCCCT ACATCCGGCT
CTTTTTCAAA GTTCTCTGAA CAAAGGTGAG TCCATCTAAA ACTTATTAAT CTGAGTACTT CACAAGGTCG ACTTCGTTAC
TACTTGGAAA ATTGATATTA TTACTTGCAC AAATTTTGTC ACAGATTCTG TAAATAAGTT TAAGCCGCTA TATCTGCAGG
GTGATAACAG TAATAATAAC ATATGACTTG AACTCAAATC ATTGGTGACA AGAAATTATA TAAATACCAT TAAAATAGGA
ACATGGCTAG CGATTATAAT TTACGTTTTA CTTTTCGATG CTGATCATTT GTAGAATTTA GCTATTACTT TCATGCTTCT
ATATAACATT GATGACATTC CCCTGTTATG ATTTCATGCT TCTCTTACCT CTAGATCCAT GCTCAAGTAG TTGATTTACA
TGTGTAAGAG CATGAGTTAA TAATAGTTTA TATTCCTGCA GTTTCAAGAA TAACACAAGA CTTAAAGGAC CAGAATTAAT
GGGATTCGTC AGATATGATA CTGGAGAAAG CTGCAAATGA AAGACTATAT CTACCAAATA ACGAGGAAGC CAATCTCTAT
CGTCCAAACA GCGCACATCA GAAATGTCTA TTTTCCTTGC ACTGTTCCAA ATTACCAATA TTATTATGCA TTGCATTCGA
ATTAGGACAT CGATAATTCT TTTCATGGTT TCCAAATCTG TACAGCTAGT ACGGATGGTT TGTGATGCCC ATTTGTAATA
TATAGATATA TATATAGATT AATTATAATG ATAATGACAG AAGCAAGTTA AATTTGGG

>Vigan.04G000900.01
TAAAATTCTC CATATATCTG TGATTCCATT CCAAAAGCAT AATTGCATTA AAGAAAGAGG AAGATTTGGT CTCTATTACA
TGTTTTTGTT ATTAGTATTA TTACTATTAG GCGCACTTCG ACTACAAATA GAACCATCAA TTGGTGTCAG CCGGTGTGAG
GGGTGAGGCT CTAAAATCTC TACCAACTTT CAGGGCTGCT ACTTCATGGA GAGGAGCATG AGGGTACCTT TTTACGTTCT
TGCAATTTTT CTTCTCCTAT CAGATCCTTT TGCTGTTATA AATGCAAACT CTGAAGGTGA TGCTCTGTTC GCATTCAGAA
GAGCTGTGAA AGACCCAAAT AACGTTCTGC AGAGCTGGGA TCCAACTTTG GTGGATCCTT GTACATGGTT CCATGTTACC
TGTGATGATG ATAAGAGAGT AACCCGACTG GACCTCGGAC ATGCAAAACT GTCTGGTCAT TTGGTTCCAG AACTAGGGAG
GCTCCAGCGC CTTCAGTTTC TAGAACTATA CAAGAATGAT TTGAAGGGTC CAATACCAAA GGAACTTGGA GACCTCAAGA
ACCTGGTTAG CTTGGGTCTC TACCAGAATA ACCTCACTGG CTCCATTCCC GCCAGCCTGT CCAACCTCTC CAACATCAAA
TTCTTGCGGC TCAACAGCAA CATGCTCACT GGAAGAATAC CGAGGGAACT CACTAAGTTG GGAAACCTCA AGATCTTAGA
CCTATCAAAC AACGATCTGT GTGGTACTTT CCCTACATCC GGCTCTTTTT CAAAGTTCTC TGAACAAAGT TTCAAGAATA
ACACAAGACT TAAAGGACCA GAATTAATGG GATTCGTCAG ATATGATACT GGAGAAAGCT GCAAATGAAA GACTATATCT
ACCAAATAAC GAGGAAGCCA ATCTCTATCG TCCAAACAGC GCACATCAGA AATGTCTATT TTCCTTGCAC TGTTCCAAAT
TACCAATATT ATTATGCATT GCATTCGAAT TAGGACATCG ATAATTCTTT TCATGGTTTC CAAATCTGTA CAGCTAGTAC
GGATGGTTTG TGATGCCCAT TTGTAATATA TAGATATATA TATAGATTAA TTATAATGAT AATGACAGAA GCAAGTTAAA
TTTGGG

>Vigan.04G000900.01
ATGGAGAGGA GCATGAGGGT ACCTTTTTAC GTTCTTGCAA TTTTTCTTCT CCTATCAGAT CCTTTTGCTG TTATAAATGC
AAACTCTGAA GGTGATGCTC TGTTCGCATT CAGAAGAGCT GTGAAAGACC CAAATAACGT TCTGCAGAGC TGGGATCCAA
CTTTGGTGGA TCCTTGTACA TGGTTCCATG TTACCTGTGA TGATGATAAG AGAGTAACCC GACTGGACCT CGGACATGCA
AAACTGTCTG GTCATTTGGT TCCAGAACTA GGGAGGCTCC AGCGCCTTCA GTTTCTAGAA CTATACAAGA ATGATTTGAA
GGGTCCAATA CCAAAGGAAC TTGGAGACCT CAAGAACCTG GTTAGCTTGG GTCTCTACCA GAATAACCTC ACTGGCTCCA
TTCCCGCCAG CCTGTCCAAC CTCTCCAACA TCAAATTCTT GCGGCTCAAC AGCAACATGC TCACTGGAAG AATACCGAGG
GAACTCACTA AGTTGGGAAA CCTCAAGATC TTAGACCTAT CAAACAACGA TCTGTGTGGT ACTTTCCCTA CATCCGGCTC
TTTTTCAAAG TTCTCTGAAC AAAGTTTCAA GAATAACACA AGACTTAAAG GACCAGAATT AATGGGATTC GTCAGATATG
ATACTGGAGA AAGCTGCAAA TGA

>Vigan.04G000900.01
MERSMRVPFY VLAIFLLLSD PFAVINANSE GDALFAFRRA VKDPNNVLQS WDPTLVDPCT WFHVTCDDDK RVTRLDLGHA
KLSGHLVPEL GRLQRLQFLE LYKNDLKGPI PKELGDLKNL VSLGLYQNNL TGSIPASLSN LSNIKFLRLN SNMLTGRIPR
ELTKLGNLKI LDLSNNDLCG TFPTSGSFSK FSEQSFKNNT RLKGPELMGF VRYDTGESCK *