GBrowse Details

Vigan.03G294100.01

Basic Information:
Name: Vigan.03G294100.01
Multiple alignment
Variant Information
Position: Chr03:43110457..43112506 (+ strand)
Length: 2050
Functional Information:
Description: Similar to cinnamyl alcohol dehydrogenase 6-like. [XP_004499301.1, Cicer arietinum]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro: Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
Alcohol dehydrogenase, zinc-type, conserved site (IPR002328)
GroES (chaperonin 10)-like (IPR011032)
Alcohol dehydrogenase, C-terminal (IPR013149)
Alcohol dehydrogenase GroES-like (IPR013154)
NAD(P)-binding domain (IPR016040)
Polyketide synthase, enoylreductase (IPR020843)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.71,14.59,202.52,389.65,2.44,172.71 ,8.01,22.69
Automatic updates:
Name: NM_001255475 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable cinnamyl alcohol dehydrogenase 6-like (LOC100779140), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255475 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative cinnamyl alcohol dehydrogenase (LOC100779140), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:43110457..43110685 (+ strand)
Length: 229
Type: five_prime_UTR
Position: Chr03:43110686..43110780 (+ strand)
Length: 95
Type: CDS
Position: Chr03:43110860..43110973 (+ strand)
Length: 114
Type: CDS
Position: Chr03:43111057..43111284 (+ strand)
Length: 228
Type: CDS
Position: Chr03:43111391..43111679 (+ strand)
Length: 289
Type: CDS
Position: Chr03:43111762..43111915 (+ strand)
Length: 154
Type: CDS
Position: Chr03:43112070..43112269 (+ strand)
Length: 200
Type: CDS
Position: Chr03:43112270..43112506 (+ strand)
Length: 237
Type: three_prime_UTR

>Vigan.03G294100.01 class=Sequence position=Chr03:43110457..43112506 (+ strand)
GCATGCAACA GATAATAAAA TAAAAGGGCC GAAGAAAATG ATAGGGACAC GACATGTGGT GAGATTTAAT GTAAAAAGAC
TGTAACTTTT TAATTTTACC TTTTTGTGTC TATAAAATGT GTAAGGTTGG GTGGCATTGA GTTCATCACA CTCTCTCGGC
TATCACTACT GTGGAGTTCA CTGCTTCCAA AGTCACAAAC AGAGAAAGTG TAATCTTTTT CCCATCACGA TGACTACAAC
AACACCGAAT CACACAGTAA CCGTATCTGG GTGGGCAGCA CATGATACTT CCGGCAAGAT TACCCCCTAC ACCTTCAAAA
GAAGGTAATG CTAACGTTTA ATTATCAGTG TTTTTCTTCA TTCTCTTACA TCATCGTTGA TGAAGGAAGT TGATTTGACG
CAGGGAGAAC GGTGTTAACG ATGTTACCAT AAAGATCTTG TACTGTGGAA TCTGCCACAC GGACCTCCAC TATGCTAAAG
ATGAATGGGG CATCACCAAG TACCCTGTGG TACCTGGGTA AGTAAAAAAA GTGAACTTGT GTTAATTGAT CACTTAATTC
AGTGACTGGT TAATTAACAG AGGTTGTTGA TTGTTTGCAG GCACGAAATC ATTGGGGTGA TAACCAAGAC AGGAAGCGAT
GTGCAGGGGT TCAAGGAAGG AGACAGAGTG GGTGTGGGGT GTATGGCAGC TTCGTGTTTG GATTGTGAAC ACTGCAAGAC
AGATCAGGAA AACTACTGTG ATAAGATGGT GCTTATATAC AACGGAATCT TCTGGGACGG AAGCATCACC TATGGTGGCT
ACTCCCAGCT CATTATTGCA GATTACAGGT TTTTTCATCA CTTTATATGA AAAGGAAATT CATTTTTTCA TGAATTAATA
TCAGTATGTC TATACATAAA ACCTTGTTTT AATATATGAA ATTCTGATGT GAAGGTATGT GGTACACATT CCGGAGAGCC
TACCGATGGA TGCGGCGGCT CCTCTACTGT GCGCCGGAAT AACAGTGTTC ACTCCTTTGA AAGATCACGA TTTGGTGGCA
ACGCCGGGGA AAAAGATTGG GGTGGTGGGT TTGGGAGGGC TGGGACACTT GGCCGTTAAA TTTGGGAAGG CATTTGGGCA
CCATGTTACC GTCATAAGCA CTTCTCCTTC CAAAGAAGCT GAAGCGAAGC AACGTTTGGG TGCTGATGAT TTCATAATCA
GCTCCAACCC TAAACAATTA CAGGTTTTTG CTTTTGTTTT TTCTCATCTG CTTCATTTTT AGGCCATGGG GAGTAAGGAA
AATGACTTAG TTTTTGTGGT GACAGGATGC AAGGAGAAGC CTCGATTTCA TACTGGACAC TGTTTCTGGA GACCACCCTC
TGTTACCCAT CTTGGAATTG CTGAAAATAA ACGGCACCTT ATTTCTGGTG GGAGCTCCGG ACAAGCCCCT CCAACTGCCG
GCTTTCCCGT TGATTTTTGG TAAGTTTAAG ATTATGGTCG GAAATCCCAC TTTAATTAAA GATAAACTTT TTTATATATA
TCTCGCTGTA TATGTACGTA GAAAGCTGCA AATACCGACT TTAGAGTGTG TTGTTCCTTG TATTTATTTA CAAAAGTATT
TTGGTTGTGA CAGGAAAGAG AGCAGTAAAA GGTGGCATCA TAGGAGGAAT AAAAGAGACT CAGGAAATGC TGGATCTGTG
TGCGAAGTAC AACATAACGA GTGACATTGA GGTAATCACA CCAGACAAAA TCAACGAGGC TATTGATCGT CTTGCGAAGA
ATGATGTTCG GTACCGTTTC GTGATTGACA TTGGTGCTGC CTCCAGCGTG TAGACTTGAA TATGTATCTG CTGTTTTTTC
CAGAATAAAT GGCAGAAACT CGTCCCTGTT TTGATGGATT CCATATCTAC AATTCCATCA CTAAATCATT CGTTTATGTC
GATGCCATTT GGTAGCCTTC ATGCTGTATT TCCATTTCGT TTATGAATAA GATGTTGAGT TTTAGGTACA CCTACAAATA
ACTACCATGC CCGTATTTAA CATGTGTTCA TTTCTTTTCT TTTTTATTTA 

>Vigan.03G294100.01
GCATGCAACA GATAATAAAA TAAAAGGGCC GAAGAAAATG ATAGGGACAC GACATGTGGT GAGATTTAAT GTAAAAAGAC
TGTAACTTTT TAATTTTACC TTTTTGTGTC TATAAAATGT GTAAGGTTGG GTGGCATTGA GTTCATCACA CTCTCTCGGC
TATCACTACT GTGGAGTTCA CTGCTTCCAA AGTCACAAAC AGAGAAAGTG TAATCTTTTT CCCATCACGA TGACTACAAC
AACACCGAAT CACACAGTAA CCGTATCTGG GTGGGCAGCA CATGATACTT CCGGCAAGAT TACCCCCTAC ACCTTCAAAA
GAAGGGAGAA CGGTGTTAAC GATGTTACCA TAAAGATCTT GTACTGTGGA ATCTGCCACA CGGACCTCCA CTATGCTAAA
GATGAATGGG GCATCACCAA GTACCCTGTG GTACCTGGGC ACGAAATCAT TGGGGTGATA ACCAAGACAG GAAGCGATGT
GCAGGGGTTC AAGGAAGGAG ACAGAGTGGG TGTGGGGTGT ATGGCAGCTT CGTGTTTGGA TTGTGAACAC TGCAAGACAG
ATCAGGAAAA CTACTGTGAT AAGATGGTGC TTATATACAA CGGAATCTTC TGGGACGGAA GCATCACCTA TGGTGGCTAC
TCCCAGCTCA TTATTGCAGA TTACAGGTAT GTGGTACACA TTCCGGAGAG CCTACCGATG GATGCGGCGG CTCCTCTACT
GTGCGCCGGA ATAACAGTGT TCACTCCTTT GAAAGATCAC GATTTGGTGG CAACGCCGGG GAAAAAGATT GGGGTGGTGG
GTTTGGGAGG GCTGGGACAC TTGGCCGTTA AATTTGGGAA GGCATTTGGG CACCATGTTA CCGTCATAAG CACTTCTCCT
TCCAAAGAAG CTGAAGCGAA GCAACGTTTG GGTGCTGATG ATTTCATAAT CAGCTCCAAC CCTAAACAAT TACAGGATGC
AAGGAGAAGC CTCGATTTCA TACTGGACAC TGTTTCTGGA GACCACCCTC TGTTACCCAT CTTGGAATTG CTGAAAATAA
ACGGCACCTT ATTTCTGGTG GGAGCTCCGG ACAAGCCCCT CCAACTGCCG GCTTTCCCGT TGATTTTTGG AAAGAGAGCA
GTAAAAGGTG GCATCATAGG AGGAATAAAA GAGACTCAGG AAATGCTGGA TCTGTGTGCG AAGTACAACA TAACGAGTGA
CATTGAGGTA ATCACACCAG ACAAAATCAA CGAGGCTATT GATCGTCTTG CGAAGAATGA TGTTCGGTAC CGTTTCGTGA
TTGACATTGG TGCTGCCTCC AGCGTGTAGA CTTGAATATG TATCTGCTGT TTTTTCCAGA ATAAATGGCA GAAACTCGTC
CCTGTTTTGA TGGATTCCAT ATCTACAATT CCATCACTAA ATCATTCGTT TATGTCGATG CCATTTGGTA GCCTTCATGC
TGTATTTCCA TTTCGTTTAT GAATAAGATG TTGAGTTTTA GGTACACCTA CAAATAACTA CCATGCCCGT ATTTAACATG
TGTTCATTTC TTTTCTTTTT TATTTA

>Vigan.03G294100.01
ATGACTACAA CAACACCGAA TCACACAGTA ACCGTATCTG GGTGGGCAGC ACATGATACT TCCGGCAAGA TTACCCCCTA
CACCTTCAAA AGAAGGGAGA ACGGTGTTAA CGATGTTACC ATAAAGATCT TGTACTGTGG AATCTGCCAC ACGGACCTCC
ACTATGCTAA AGATGAATGG GGCATCACCA AGTACCCTGT GGTACCTGGG CACGAAATCA TTGGGGTGAT AACCAAGACA
GGAAGCGATG TGCAGGGGTT CAAGGAAGGA GACAGAGTGG GTGTGGGGTG TATGGCAGCT TCGTGTTTGG ATTGTGAACA
CTGCAAGACA GATCAGGAAA ACTACTGTGA TAAGATGGTG CTTATATACA ACGGAATCTT CTGGGACGGA AGCATCACCT
ATGGTGGCTA CTCCCAGCTC ATTATTGCAG ATTACAGGTA TGTGGTACAC ATTCCGGAGA GCCTACCGAT GGATGCGGCG
GCTCCTCTAC TGTGCGCCGG AATAACAGTG TTCACTCCTT TGAAAGATCA CGATTTGGTG GCAACGCCGG GGAAAAAGAT
TGGGGTGGTG GGTTTGGGAG GGCTGGGACA CTTGGCCGTT AAATTTGGGA AGGCATTTGG GCACCATGTT ACCGTCATAA
GCACTTCTCC TTCCAAAGAA GCTGAAGCGA AGCAACGTTT GGGTGCTGAT GATTTCATAA TCAGCTCCAA CCCTAAACAA
TTACAGGATG CAAGGAGAAG CCTCGATTTC ATACTGGACA CTGTTTCTGG AGACCACCCT CTGTTACCCA TCTTGGAATT
GCTGAAAATA AACGGCACCT TATTTCTGGT GGGAGCTCCG GACAAGCCCC TCCAACTGCC GGCTTTCCCG TTGATTTTTG
GAAAGAGAGC AGTAAAAGGT GGCATCATAG GAGGAATAAA AGAGACTCAG GAAATGCTGG ATCTGTGTGC GAAGTACAAC
ATAACGAGTG ACATTGAGGT AATCACACCA GACAAAATCA ACGAGGCTAT TGATCGTCTT GCGAAGAATG ATGTTCGGTA
CCGTTTCGTG ATTGACATTG GTGCTGCCTC CAGCGTGTAG 

>Vigan.03G294100.01
MTTTTPNHTV TVSGWAAHDT SGKITPYTFK RRENGVNDVT IKILYCGICH TDLHYAKDEW GITKYPVVPG HEIIGVITKT
GSDVQGFKEG DRVGVGCMAA SCLDCEHCKT DQENYCDKMV LIYNGIFWDG SITYGGYSQL IIADYRYVVH IPESLPMDAA
APLLCAGITV FTPLKDHDLV ATPGKKIGVV GLGGLGHLAV KFGKAFGHHV TVISTSPSKE AEAKQRLGAD DFIISSNPKQ
LQDARRSLDF ILDTVSGDHP LLPILELLKI NGTLFLVGAP DKPLQLPAFP LIFGKRAVKG GIIGGIKETQ EMLDLCAKYN
ITSDIEVITP DKINEAIDRL AKNDVRYRFV IDIGAASSV*