GBrowse Details

Vigan.03G270600.01

Basic Information:
Name: Vigan.03G270600.01
Multiple alignment
Variant Information
Position: Chr03:41055675..41058675 (+ strand)
Length: 3001
Functional Information:
Description: Similar to non-specific lipid-transfer protein-like. [XP_004499058.1, Cicer arietinum]
GO: Molecular Function: sterol binding (GO:0032934)
InterPro: SCP2 sterol-binding domain (IPR003033)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:192.53,55.23,31.85,18.33,23.07,45.49 ,15.22,18.43
Arabidopsis thaliana homolog: AT5G42890.1
Automatic updates:
Name: NM_001249144 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500301 (LOC100500301), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249144 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sterol carrier protein 2-like (LOC100500301), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:41055675..41055845 (+ strand)
Length: 171
Type: five_prime_UTR
Position: Chr03:41055846..41055974 (+ strand)
Length: 129
Type: CDS
Position: Chr03:41056065..41056125 (+ strand)
Length: 61
Type: CDS
Position: Chr03:41057236..41057338 (+ strand)
Length: 103
Type: CDS
Position: Chr03:41057441..41057522 (+ strand)
Length: 82
Type: CDS
Position: Chr03:41057523..41058675 (+ strand)
Length: 1153
Type: three_prime_UTR

>Vigan.03G270600.01 class=Sequence position=Chr03:41055675..41058675 (+ strand)
CATTTCAATA CGTAACACCG TAACGTAACG AAACAGGGAG AGGAGTATAA ATACAGAAGT TACGGGAAAG CTGAAATCAG
ATGGTGCTGG TCCCACTCCT CCAACCAACA CACCCGAACT TAAACCAAAC TCGAACTGGT AGGTTTCGTG TGATTGTTGC
GTCGCGAAGC CATGGCGGAT TCTTCGAACC TGAAATCCGA CGCGATTATG GAGCAGATGA AGCAGCACTT CGCCACTGAC
GCTGGCAAAA AGCTCACGGA AAAAATTGGA CTAGTTTATC AATTTCACAT TGCTCCGAAG GTAACCTTCC TTCTCCCTTC
TTCTCACTCT TCGTTTAACC TAATTGTTGT GAATTACATT ACCGTCTCAT TGAATGGCTT GGATTTGTAG AAACTTGGAT
TTGATGAGGT CGTCTACACC GTTGATCTCA AGAAAGGAGA GGTCACCAAA GGTTAGCATG TTTCCTTTCT TTCGTTTTCA
CTTTTCAATT GTTTTTGTTT ATACTTAGGT TTTCGATATG AATTGCAATC GGAGACGAGC ACGTGTTTCG TGAATCATGA
TGATGAACCT TTGGATTCAC TCTCCGACCC GAAGTAAAAT GTTGCTGCTA TGCATGCAAT GTATTGTGAT CTCAATGATA
AACAATATAC AGTATTCACC GTACTGATTA TGGTGAGACG AGGTGCTTAA CAAATTATAA AAAGTTGAGA AATATAAGAA
GAAAATGAAA AGAGATTCTC CAGAAGTTAA ATTAAATTTT ACACAAACTA AGAGAAAACT TCTACAAATT AATTTATGCA
GAAACTCATT TTAATTTAAG TAGAAACTAA TTTCGGTTTG TCTTTTTATT TTTCTATTTG AAATTCTTCG AGAAACTCGT
TCAAACGCAC TGTTTCACCT TTACACTATG GCACTGTGTG TTACAGAGGT AGATCAGGAT TGTAGAATTT TCCTCCCATC
TTTTGTGATG AGTATCAAGG CTTGAAGCCA TATCTTGTGA TAAGTAGCAA GAGCAGACAG AACTTAATAT ACTATCTTAA
CTTGTGAGCG TTAAACTTTT GTTTGAGTAA ATAGTCTATT CCAGTGTAAA TTTTATAGAC GAATTGTTAT ATACAATTTG
TTGTGTTAAC TACCTTAAAA GTCACACCTA TCATTGATTA GTAAATTGAC TGTGTAGTTT CATCGTTATA GAGTTTAATT
GGTAAACTGT CATTGTGAAT TTTTTGAAAT GAATTTATTA TGCGAATTAT GGAAACAGTA CTTAAATTTT AATTAGGTAT
AGAATTGAAA ATATTTTAAA CACTACGTTT AAATTGTCTA AAGGTAACTA AATAGCTTTT CTACCCTGGC CTTTTCAATG
TACGCTAAAC TGATTTCAAT CTTTTTATTA AGGTTGGTTT TCTTGACACC AGAGATTAAT CAATAATTTC TACAATTTTT
CTGGAAATCA GATGGTTTTT AGAACTGTAG TTCGACAATT CTACTTGATT TGACTAAATT TTATTGCGTT CTCTGACAAT
AATATACTGT ATGAGTATTT ATTGGGTTTG TGTGTATTCA GGGCTATACG AAGGAGGAAA ACCCGATGCA TCCTTTTCAT
TTAAGGACGA GGACTTTGTT AAGATTGCCT TGGGAAAGAT GAATCCGCAG ATTGCTTTCA TGAGGTTCAA CTTTTCAATG
GATATTTTCC TTCCAATTTA CTTTTCGTTG TTTTTTCTTC TTTGTTGATG CATTCATGTG CTTGATGTGG TGGTGAATGA
ATGTAGGGGT GCGATGAAGA TTAAGGGGAG TTTGAGTGCT GCTCAGAAAT TTACTCCGGA TATCTTCCCA AAGCCTTCCA
AGCTGTGAGC TGAGATGCTT TCAACTACTT AAGATTGCAA GAATTATCGT TTGATGCACT CAACCAAAAT AGATAGCATC
AACATTTCAG GAATATAATT ATATATCTTT AGGTAATACA TGATTTTAAT TTAGCGCTGT CCTGCAAATC TGTCATATCT
TTATTGCATT GTAATGGGAT GTTTTATGTA TGAAAATAGT ATATCATACA TTGTTTACAA CCACTTTTCT ATTTTTTATT
TATAAATTCT CGGACCAATA CATGGTTTTC TGACTATTTG TTGGATTTTT CAGCATGTGT CTACACCCTG CATAAGCGAT
CACTATCTTT GCTAATGCTA TTTTTATCAA CCAAAATTGC TAATGTTTTC TTTATCAATC TTTATATTAT TTCAGTAGCA
TATATCACTG TTAAGTTTTC TTCAAATGAC ATTCCAGTGT CAACATCTAC ACAGTTGTTA TTGTAATCTA TTGTGACCTA
GGTTGTGCTG AAAAATACTA ACTAGTATTA TTCTCAGTCA TTTTCCTGTT GGGAGTGAAA CCATTAGAAC CTTTATAGAA
ATATGATTTT ATTGTTTAAG GAGTGAGGGT TCATATATTC ATGGTTCATT TTAATTCAGA TATATTATAT CTCTTACGGT
TTATCTTTAT ATACTAAGAA AATCTCCATC TCCTTATGTC GCACATCATA CACCCTATCG ATATTAATAA GGGTGTCACT
GCTTATCAGG CAATAAGAGT TTCAAATCTA TTTTGTACAC ATTTTTGGGG CTGAGGGGCT CGAAATTTGC TATGTTGTCG
TCACAGCGAA AAGCTTTAAC TGGGTTGGGT GTTGTGAAAC TTGTCCTTCT CATCCTATAG TTAAATTGAT TTTATTGTCA
ATTTGATCAT TATCTTGTAC TGTTCCTTTC TTCATTACTC ACGCATTTGT TTCTTATTCA AACTGCTATC TTCTACTCAA
TTTACATGCG TTGAACAGTA AAGCTTACTT CTTGTTTTGA ACCCTTAGAG CCAATAAAGG CAAATATGAT TAAGTTCAAA
TCGCAGTGAG AATGATCACA AAACATTGAT GTCGTGCATG CTAGAAAGGT AGGAAAGTTT GCACCAAAAT TATTGAAATG
GACAAAATTT TATAATTTTT TTTCATATGA ATAAATCGCG T

>Vigan.03G270600.01
CATTTCAATA CGTAACACCG TAACGTAACG AAACAGGGAG AGGAGTATAA ATACAGAAGT TACGGGAAAG CTGAAATCAG
ATGGTGCTGG TCCCACTCCT CCAACCAACA CACCCGAACT TAAACCAAAC TCGAACTGGT AGGTTTCGTG TGATTGTTGC
GTCGCGAAGC CATGGCGGAT TCTTCGAACC TGAAATCCGA CGCGATTATG GAGCAGATGA AGCAGCACTT CGCCACTGAC
GCTGGCAAAA AGCTCACGGA AAAAATTGGA CTAGTTTATC AATTTCACAT TGCTCCGAAG AAACTTGGAT TTGATGAGGT
CGTCTACACC GTTGATCTCA AGAAAGGAGA GGTCACCAAA GGGCTATACG AAGGAGGAAA ACCCGATGCA TCCTTTTCAT
TTAAGGACGA GGACTTTGTT AAGATTGCCT TGGGAAAGAT GAATCCGCAG ATTGCTTTCA TGAGGGGTGC GATGAAGATT
AAGGGGAGTT TGAGTGCTGC TCAGAAATTT ACTCCGGATA TCTTCCCAAA GCCTTCCAAG CTGTGAGCTG AGATGCTTTC
AACTACTTAA GATTGCAAGA ATTATCGTTT GATGCACTCA ACCAAAATAG ATAGCATCAA CATTTCAGGA ATATAATTAT
ATATCTTTAG GTAATACATG ATTTTAATTT AGCGCTGTCC TGCAAATCTG TCATATCTTT ATTGCATTGT AATGGGATGT
TTTATGTATG AAAATAGTAT ATCATACATT GTTTACAACC ACTTTTCTAT TTTTTATTTA TAAATTCTCG GACCAATACA
TGGTTTTCTG ACTATTTGTT GGATTTTTCA GCATGTGTCT ACACCCTGCA TAAGCGATCA CTATCTTTGC TAATGCTATT
TTTATCAACC AAAATTGCTA ATGTTTTCTT TATCAATCTT TATATTATTT CAGTAGCATA TATCACTGTT AAGTTTTCTT
CAAATGACAT TCCAGTGTCA ACATCTACAC AGTTGTTATT GTAATCTATT GTGACCTAGG TTGTGCTGAA AAATACTAAC
TAGTATTATT CTCAGTCATT TTCCTGTTGG GAGTGAAACC ATTAGAACCT TTATAGAAAT ATGATTTTAT TGTTTAAGGA
GTGAGGGTTC ATATATTCAT GGTTCATTTT AATTCAGATA TATTATATCT CTTACGGTTT ATCTTTATAT ACTAAGAAAA
TCTCCATCTC CTTATGTCGC ACATCATACA CCCTATCGAT ATTAATAAGG GTGTCACTGC TTATCAGGCA ATAAGAGTTT
CAAATCTATT TTGTACACAT TTTTGGGGCT GAGGGGCTCG AAATTTGCTA TGTTGTCGTC ACAGCGAAAA GCTTTAACTG
GGTTGGGTGT TGTGAAACTT GTCCTTCTCA TCCTATAGTT AAATTGATTT TATTGTCAAT TTGATCATTA TCTTGTACTG
TTCCTTTCTT CATTACTCAC GCATTTGTTT CTTATTCAAA CTGCTATCTT CTACTCAATT TACATGCGTT GAACAGTAAA
GCTTACTTCT TGTTTTGAAC CCTTAGAGCC AATAAAGGCA AATATGATTA AGTTCAAATC GCAGTGAGAA TGATCACAAA
ACATTGATGT CGTGCATGCT AGAAAGGTAG GAAAGTTTGC ACCAAAATTA TTGAAATGGA CAAAATTTTA TAATTTTTTT
TCATATGAAT AAATCGCGT

>Vigan.03G270600.01
ATGGCGGATT CTTCGAACCT GAAATCCGAC GCGATTATGG AGCAGATGAA GCAGCACTTC GCCACTGACG CTGGCAAAAA
GCTCACGGAA AAAATTGGAC TAGTTTATCA ATTTCACATT GCTCCGAAGA AACTTGGATT TGATGAGGTC GTCTACACCG
TTGATCTCAA GAAAGGAGAG GTCACCAAAG GGCTATACGA AGGAGGAAAA CCCGATGCAT CCTTTTCATT TAAGGACGAG
GACTTTGTTA AGATTGCCTT GGGAAAGATG AATCCGCAGA TTGCTTTCAT GAGGGGTGCG ATGAAGATTA AGGGGAGTTT
GAGTGCTGCT CAGAAATTTA CTCCGGATAT CTTCCCAAAG CCTTCCAAGC TGTGA

>Vigan.03G270600.01
MADSSNLKSD AIMEQMKQHF ATDAGKKLTE KIGLVYQFHI APKKLGFDEV VYTVDLKKGE VTKGLYEGGK PDASFSFKDE
DFVKIALGKM NPQIAFMRGA MKIKGSLSAA QKFTPDIFPK PSKL*