GBrowse Details

Vigan.03G125700.01

Basic Information:
Name: Vigan.03G125700.01
Multiple alignment
Variant Information
Position: Chr03:13775824..13777037 (- strand)
Length: 1214
Functional Information:
Description: Similar to Casparian strip membrane protein 1. [P0DI39, Vigna unguiculata]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant subgroup (IPR006459)
Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.03,0.00,4.53,0.21,21.44, 0.00
Structure :
Position: Chr03:13775824..13776027 (- strand)
Length: 204
Type: three_prime_UTR
Position: Chr03:13776028..13776243 (- strand)
Length: 216
Type: CDS
Position: Chr03:13776512..13776635 (- strand)
Length: 124
Type: CDS
Position: Chr03:13776741..13776970 (- strand)
Length: 230
Type: CDS
Position: Chr03:13776971..13777037 (- strand)
Length: 67
Type: five_prime_UTR

>Vigan.03G125700.01 class=Sequence position=Chr03:13775824..13777037 (- strand)
GCATCACCCT GTCTCGTGTA TCCTTAGAGC ATAAACTAAG CTTCCGCTGT TCTCACTAAA GCCAAAAATG TCAACCACCA
TCGATATCCC AGAATCAAGT AAAGTTGTGG TTGCGGCACC ACTAAGGCCA GGAGGATGGA AAAAAGGGTT AGCCATAATG
GATTTCATTC TAAGGTTAGG TGCCATAGCA GCTGCTCTTG GTGCTGCTGC CACTATGGGA ACAAGTGATC AGACACTCCC
TTTCTTCACT CAGTTCTTTC AGTTTGAGGC TAGTTATGAT AGCTTCACTA CTTTCCAGTA TGTCATGATC TTCAAAACTC
TATTATTTTC TCTACCTTTT CGCACCATCT ATGTTAATTC ACTGAAATCA TAAATTTTAA CCAATGCGTA ACACAAATGC
AGGTTTTTTG TTATTACTAT GGCTTTAGTG GGTGGCTACC TCGTGCTATC TCTTCCTTTC TCCGTTGTTG CAATTATTCG
TCCCCATGCT GTTGGACCAA GGCTTTTCCT CATTATCTTG GACACTGTAA TCTTTAAAAT ATTCATAAAT TCAGTTCTAT
TTTAATAATC TTCTCACCAT TATTTGCTTA TAAATACCCA ACAAAAAAGC ACATTTATTT TCCAAATGAT CCCTTCTGTG
GCAAAATATA AGTCTATTTT ACTTATGATA TTTTTTCCTC GGTATTATAA TTTCATTTAG TGAATAATTT CCTAGTTTTG
GACTTGCTGA TCCAACAGTA AGTTTTATTA ACATTAGCAT GATATTTTGT TATAGACTTT TATATGAAAT GCAGGTGTTT
CTCACTCTAG CCACTGCCAG TGCTGCTTCA GCTGCTGCCG TAGTTTACTT AGCACACAAC GGTGATCAGG ACACGAACTG
GTTAGCCATA TGCAACCAAT TTGGAGACTT TTGTGCGCAG ACCAGTGCAG CTGTGGTGTC ATCGTTCGTT GCCGTTGTTG
TCTTAGTATT GGTTATTGTG ATGTCTGCTT TAGCAATTGG CAAGCCTTGA AAATTAAAGT ATTGGGGCTT TTAAGTTAAA
TGAACTATTG CAGTTATATA TAAATATTTT GCATGTTCTA TTTGTTTCCG AAGTATGATG TACTAATTAT AATTAATACC
TCGGCTTGTT TTAATTTCCT TCAAGTATGA TGTGATAATT CATTACTTGT ATACATCTGG TCATTCTAAT ATTATATGCA
CAGTTTCAAT TTCA

>Vigan.03G125700.01
GCATCACCCT GTCTCGTGTA TCCTTAGAGC ATAAACTAAG CTTCCGCTGT TCTCACTAAA GCCAAAAATG TCAACCACCA
TCGATATCCC AGAATCAAGT AAAGTTGTGG TTGCGGCACC ACTAAGGCCA GGAGGATGGA AAAAAGGGTT AGCCATAATG
GATTTCATTC TAAGGTTAGG TGCCATAGCA GCTGCTCTTG GTGCTGCTGC CACTATGGGA ACAAGTGATC AGACACTCCC
TTTCTTCACT CAGTTCTTTC AGTTTGAGGC TAGTTATGAT AGCTTCACTA CTTTCCAGTT TTTTGTTATT ACTATGGCTT
TAGTGGGTGG CTACCTCGTG CTATCTCTTC CTTTCTCCGT TGTTGCAATT ATTCGTCCCC ATGCTGTTGG ACCAAGGCTT
TTCCTCATTA TCTTGGACAC TGTGTTTCTC ACTCTAGCCA CTGCCAGTGC TGCTTCAGCT GCTGCCGTAG TTTACTTAGC
ACACAACGGT GATCAGGACA CGAACTGGTT AGCCATATGC AACCAATTTG GAGACTTTTG TGCGCAGACC AGTGCAGCTG
TGGTGTCATC GTTCGTTGCC GTTGTTGTCT TAGTATTGGT TATTGTGATG TCTGCTTTAG CAATTGGCAA GCCTTGAAAA
TTAAAGTATT GGGGCTTTTA AGTTAAATGA ACTATTGCAG TTATATATAA ATATTTTGCA TGTTCTATTT GTTTCCGAAG
TATGATGTAC TAATTATAAT TAATACCTCG GCTTGTTTTA ATTTCCTTCA AGTATGATGT GATAATTCAT TACTTGTATA
CATCTGGTCA TTCTAATATT ATATGCACAG TTTCAATTTC A

>Vigan.03G125700.01
ATGTCAACCA CCATCGATAT CCCAGAATCA AGTAAAGTTG TGGTTGCGGC ACCACTAAGG CCAGGAGGAT GGAAAAAAGG
GTTAGCCATA ATGGATTTCA TTCTAAGGTT AGGTGCCATA GCAGCTGCTC TTGGTGCTGC TGCCACTATG GGAACAAGTG
ATCAGACACT CCCTTTCTTC ACTCAGTTCT TTCAGTTTGA GGCTAGTTAT GATAGCTTCA CTACTTTCCA GTTTTTTGTT
ATTACTATGG CTTTAGTGGG TGGCTACCTC GTGCTATCTC TTCCTTTCTC CGTTGTTGCA ATTATTCGTC CCCATGCTGT
TGGACCAAGG CTTTTCCTCA TTATCTTGGA CACTGTGTTT CTCACTCTAG CCACTGCCAG TGCTGCTTCA GCTGCTGCCG
TAGTTTACTT AGCACACAAC GGTGATCAGG ACACGAACTG GTTAGCCATA TGCAACCAAT TTGGAGACTT TTGTGCGCAG
ACCAGTGCAG CTGTGGTGTC ATCGTTCGTT GCCGTTGTTG TCTTAGTATT GGTTATTGTG ATGTCTGCTT TAGCAATTGG
CAAGCCTTGA 

>Vigan.03G125700.01
MSTTIDIPES SKVVVAAPLR PGGWKKGLAI MDFILRLGAI AAALGAAATM GTSDQTLPFF TQFFQFEASY DSFTTFQFFV
ITMALVGGYL VLSLPFSVVA IIRPHAVGPR LFLIILDTVF LTLATASAAS AAAVVYLAHN GDQDTNWLAI CNQFGDFCAQ
TSAAVVSSFV AVVVLVLVIV MSALAIGKP*