GBrowse Details

Vigan.03G110100.01

Basic Information:
Name: Vigan.03G110100.01
Multiple alignment
Variant Information
Position: Chr03:11549942..11552590 (+ strand)
Length: 2649
Functional Information:
Description: Similar to Uncharacterized protein. [I1MBJ0, Glycine max]
InterPro: GCN5-like 1 (IPR009395)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.05,7.90,8.34,7.01,13.83,11.64,6.3 5,6.75
Arabidopsis thaliana homolog: AT2G30330.1
Automatic updates:
Name: NM_001248677 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305965 (LOC100305965), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248677 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max biogenesis of lysosome-related organelles complex 1 subunit 1-like (LOC100305965), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001363801 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max biogenesis of lysosome-related organelles complex 1 subunit 1-like (LOC100305965), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:11549942..11550052 (+ strand)
Length: 111
Type: five_prime_UTR
Position: Chr03:11550053..11550167 (+ strand)
Length: 115
Type: CDS
Position: Chr03:11550252..11550457 (+ strand)
Length: 206
Type: CDS
Position: Chr03:11551593..11551682 (+ strand)
Length: 90
Type: CDS
Position: Chr03:11551683..11552590 (+ strand)
Length: 908
Type: three_prime_UTR

>Vigan.03G110100.01 class=Sequence position=Chr03:11549942..11552590 (+ strand)
CTTTCTTCTA TTTTGCTTTT GAAGCAAAAA CAGGGCGAAA CCAATACTGC ATTGGGAAAT TTGCAGGGAA AGTTCTTGCG
ACGAACCGGA AGAAAAGGGG CTCAGAATCG AATGAATGGA AAAGGGTCTG TGGGAATGGA GGGAGAACCA AAAGGGTTAG
AAGCTTCACT GCACCATTTG CTCGAACTCC ACCATCACAA ATCTCTCGTC CTTACCCAAC GCACAGGTAT CTCTCTTTCC
CCCTTCTTCT CCTTCCATCA AAATCCAATC TTGTTTCGCT AGCACCAACT TTCTTCATCT GGGTATGCAG AGAAAGCCAA
AAAGGACGCC ATCAGGAAAA CCGCGCGCGT TTCTGATCTG TTGGTGGAAG CAGTCAATGG CGGGGTGCAT GAGTCCTTCA
TCAACCAGAA GCGAATTGAG CTCGAAATTC GAGCCCTTGC TGTCACCATC ACAAGGTTCA TGAAGCAAAC TGATCAGTGG
CTCGCTACCA CTCATGCCCT CAACACTGCT CTCAAGGTGC CACAACTTAC TTTCTTGCAT TCATCGTTTT TAACATAGAT
CAATGTGCTG CTTTTTGTTG AAATTTGGGA TGGGTGTTTT TTAAATTTGT TGTTATCGTT GTTACTTGCA ATCAACGTTT
TAAATTTATG TTAGTGCCAT AATTGGGATC TTAGAATCTC TAAAAGCCTT GACAATGCCG ATGTAGACAG TATTCTAAAA
CATTTTTTGT AATGTAGTTA TTATTGTTCT GTTTTGCATT GGACACAGCT CTGGCTAATT TGTGTGGATA AGAATTAGAA
GGGACATGTA ACAAAACAAC CTTGGTTGTT ATTATTGATG TGTTTTAGAC AGTTCTATTT GTAAAAGATT GTTTTGTTGT
TACCGTCATC ATCTAATTTC AAATGAGGAT ATAAATTTAG GGGTGTGATT GACATGCCTG CTCTTGAAAT TACTGGGCAG
GGTTTTAAAT TACAGTGGTT GCAGTTTTAT CATAATCTTT TATATTTCAG AAGAATTGTA GACAGTGACT AATGGGTCAC
AAACTATGGC CACAATGCGC ATGTGAAGAC CACAAAATCA TTGGTCTGCA GTTGCTGTTG CTGACTGTTT TCTAAACAAC
CTTTGTTATT GAGTTTTTAA TTGGGCTGGT AAAAAAATTA AGTAAACCTA GACTGTGATG ATGTTTCTTC CTGCCGGATG
TTCATTGTGC TTTAGATAGA TGGCACCATT TTTGAGTTTC TCTTTTGGCA CTTTTTGACT TATGAAAGAA TTGAGAGGTT
TGGTTCTACA TCTATGGTTA GGGATATCCC AATTATTAAG ATGGTTGTAA TTTTAAGATA AGTGCAGGAG TTTAATTCTG
GCAATAGGCA TCCATCAAGT TTAGGGTAGC CGTGGGGTGG GATAAATGAT TTAGTACCTA GAATCCCCTT TTATTTTTAG
AGACTCCTTA TACAAAATTA TAGAATGGAG TATAAAGAGG GAATTGAAGG AGAGGATTAA TGTATAGTTT CTTCTCATAA
ATTTGGCTCA TGTTCTATGT ATTGTATATT TTTGTTTGGA TTGCAATGCT AATTGTGCTT AACTTACTAT TTAATTTTTG
ACTTTTATGA AGTGTGGTTA ACTTGCTATG AACTTTCATC TGAATTCATA GGAAATTGGA GACTTCGAGA ACTGGATGAA
GATCATGGAA TATGATTGTA AAAATATCAC CACAGCTATA CAGAATATTC ACCAAGAGTG ATACTACTGC AATTGTTCGT
GCATGTCACC ATGTAATTCT AATTATCTAA TCCCTTTTCA TTAGTTTTTT TTCTATTCTA AGCATAATAC CAAATATCAT
GCATTAGTTT TAGATAACCA TTTGCCTTTA TTTTCAGTTT AGTAATTTCC TTGAAGAAGG AAAGATTGAT TATCACCCTT
ATTCTTAATA AGTTATGTTC TGCTATCATT TGACTTTGTA AATGTTCAAA TTTGAAATTT TCTTCTCTAC TAACTATAAA
GCTTTTGAGT GTATAAAGGA ACAAAAGAAA AAATAATGAT GCTTTGTCTT TGTGATTTTG TCATAGAGCA TTGTGTATTT
GGATATAATA GATAAATAGA GCAAAGTTCC CGAAATTTTA GCAATAATCA TCTCCCGTCA GCAATTTTGC TGAACAGTCT
TGTATTCCAG TTGTTTTGCG GGCCTTTGCC CGTGAATATA TTTTTGCAAA TTTTATCTAT ACATTTTCTA GTAGTTTTTT
TAAGTCATAC TTGCAGAGGG ATTTGAGCTA TTTATTCACT CTTTCCCCTG TTTCTGCTTT CTTGTAGCAC TTGAAACATG
TTTGTCAAAT TTAAAAGTCT ATGCATACTC ATGGAGTGTC AATGGACTCT ACTAATATAC TCACATCACA TAAACTCACA
AGTGTTTGTG ATATAAAATC ATTCCTAAAA ACCAGGTGGG AAATATTACT TCAGTTTAGA AATGGCAAAT GAATCCTTCT
TCGTGGTATT GTCTGAAGCA ATCCTAATTT TGACAGAAAT TTCCGATTGA TTGAATATAG ATATGAGTAA TATTTGATTT
TGTAAATTAG ATATTTGGAC AAGGATGTTT ATATACATAT CCTCGTTTCT GTCCTTATAG CTGTCTTTGT CCTCGTTTTG
GTATCCGTC

>Vigan.03G110100.01
CTTTCTTCTA TTTTGCTTTT GAAGCAAAAA CAGGGCGAAA CCAATACTGC ATTGGGAAAT TTGCAGGGAA AGTTCTTGCG
ACGAACCGGA AGAAAAGGGG CTCAGAATCG AATGAATGGA AAAGGGTCTG TGGGAATGGA GGGAGAACCA AAAGGGTTAG
AAGCTTCACT GCACCATTTG CTCGAACTCC ACCATCACAA ATCTCTCGTC CTTACCCAAC GCACAGAGAA AGCCAAAAAG
GACGCCATCA GGAAAACCGC GCGCGTTTCT GATCTGTTGG TGGAAGCAGT CAATGGCGGG GTGCATGAGT CCTTCATCAA
CCAGAAGCGA ATTGAGCTCG AAATTCGAGC CCTTGCTGTC ACCATCACAA GGTTCATGAA GCAAACTGAT CAGTGGCTCG
CTACCACTCA TGCCCTCAAC ACTGCTCTCA AGGAAATTGG AGACTTCGAG AACTGGATGA AGATCATGGA ATATGATTGT
AAAAATATCA CCACAGCTAT ACAGAATATT CACCAAGAGT GATACTACTG CAATTGTTCG TGCATGTCAC CATGTAATTC
TAATTATCTA ATCCCTTTTC ATTAGTTTTT TTTCTATTCT AAGCATAATA CCAAATATCA TGCATTAGTT TTAGATAACC
ATTTGCCTTT ATTTTCAGTT TAGTAATTTC CTTGAAGAAG GAAAGATTGA TTATCACCCT TATTCTTAAT AAGTTATGTT
CTGCTATCAT TTGACTTTGT AAATGTTCAA ATTTGAAATT TTCTTCTCTA CTAACTATAA AGCTTTTGAG TGTATAAAGG
AACAAAAGAA AAAATAATGA TGCTTTGTCT TTGTGATTTT GTCATAGAGC ATTGTGTATT TGGATATAAT AGATAAATAG
AGCAAAGTTC CCGAAATTTT AGCAATAATC ATCTCCCGTC AGCAATTTTG CTGAACAGTC TTGTATTCCA GTTGTTTTGC
GGGCCTTTGC CCGTGAATAT ATTTTTGCAA ATTTTATCTA TACATTTTCT AGTAGTTTTT TTAAGTCATA CTTGCAGAGG
GATTTGAGCT ATTTATTCAC TCTTTCCCCT GTTTCTGCTT TCTTGTAGCA CTTGAAACAT GTTTGTCAAA TTTAAAAGTC
TATGCATACT CATGGAGTGT CAATGGACTC TACTAATATA CTCACATCAC ATAAACTCAC AAGTGTTTGT GATATAAAAT
CATTCCTAAA AACCAGGTGG GAAATATTAC TTCAGTTTAG AAATGGCAAA TGAATCCTTC TTCGTGGTAT TGTCTGAAGC
AATCCTAATT TTGACAGAAA TTTCCGATTG ATTGAATATA GATATGAGTA ATATTTGATT TTGTAAATTA GATATTTGGA
CAAGGATGTT TATATACATA TCCTCGTTTC TGTCCTTATA GCTGTCTTTG TCCTCGTTTT GGTATCCGTC 

>Vigan.03G110100.01
ATGAATGGAA AAGGGTCTGT GGGAATGGAG GGAGAACCAA AAGGGTTAGA AGCTTCACTG CACCATTTGC TCGAACTCCA
CCATCACAAA TCTCTCGTCC TTACCCAACG CACAGAGAAA GCCAAAAAGG ACGCCATCAG GAAAACCGCG CGCGTTTCTG
ATCTGTTGGT GGAAGCAGTC AATGGCGGGG TGCATGAGTC CTTCATCAAC CAGAAGCGAA TTGAGCTCGA AATTCGAGCC
CTTGCTGTCA CCATCACAAG GTTCATGAAG CAAACTGATC AGTGGCTCGC TACCACTCAT GCCCTCAACA CTGCTCTCAA
GGAAATTGGA GACTTCGAGA ACTGGATGAA GATCATGGAA TATGATTGTA AAAATATCAC CACAGCTATA CAGAATATTC
ACCAAGAGTG A

>Vigan.03G110100.01
MNGKGSVGME GEPKGLEASL HHLLELHHHK SLVLTQRTEK AKKDAIRKTA RVSDLLVEAV NGGVHESFIN QKRIELEIRA
LAVTITRFMK QTDQWLATTH ALNTALKEIG DFENWMKIME YDCKNITTAI QNIHQE*