GBrowse Details

Vigan.03G104400.01

Basic Information:
Name: Vigan.03G104400.01
Multiple alignment
Variant Information
Position: Chr03:10776379..10779161 (+ strand)
Length: 2783
Functional Information:
Description: Similar to Uncharacterized protein. [I1JHM9, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: BTB/POZ-like (IPR000210)
BTB/POZ fold (IPR011333)
BTB/POZ (IPR013069)
NPH3 domain (IPR027356)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.16,0.14,154.09,69.01,0.28,7.82,0.43,34.46
Arabidopsis thaliana homolog: AT2G30520.1
Automatic updates:
Name: NM_001358756 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max root phototropism protein 2-like (LOC100127361), mRNA.
PubMed ID: 18365246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:10776379..10776644 (+ strand)
Length: 266
Type: five_prime_UTR
Position: Chr03:10776645..10776700 (+ strand)
Length: 56
Type: CDS
Position: Chr03:10776816..10776885 (+ strand)
Length: 70
Type: CDS
Position: Chr03:10776985..10778106 (+ strand)
Length: 1122
Type: CDS
Position: Chr03:10778408..10778908 (+ strand)
Length: 501
Type: CDS
Position: Chr03:10778909..10779161 (+ strand)
Length: 253
Type: three_prime_UTR

>Vigan.03G104400.01 class=Sequence position=Chr03:10776379..10779161 (+ strand)
TGAAGAGTGT GATACTCTCA GCTTAAAAAG GAATCACTTT AATGAAAGGA TAAATAAGAT AACAACAAGT CAGTGAAAAG
AAAGCATGCC AGACTTGGAC CACAGTGACA AACTCAACTC ATTACTAGAC AACAATTACA ATAATGAAAT GAATGTACAG
GAATCGAAAA TCTCCTTATA GCAGCAACTA AGCATATCAT ATAACAAGCA GTTACTCTCA AACTCCTAAT CCTATTCAGA
CCACGAAAAA CCAAGAAACA TCATCCATGG CAACCCCCAG CCCCACCAGA TTATCCCTTG CCATGGAGAG AACCGGGCAA
TGGTAAACAC CACTCTAATC CTTCATTCTC CAATGCACAA TTTCATGAAT CAATTAGGGA TGAGCTAATT TTAGTTGTTA
TAGGAATAAT ATTCACATGA GTCAATTGTT ATTGCAGGAT TTTCTCCCCA GAAATCCCAG CCGATGTTAT TGTTACAGTA
GGGGAAGCCG ATTTTTCTCT ACACAAGGTA CCAAAATTTT TCACTTTTAC AAGGAACTTC ATAATTAATT CTTCTTATAT
CTGTGAATTT GTGTATTGAA TTTGTAAGTG CTGGATTTTT TAACAGTTTA TTCTGGCGGC AAAGAGCAAC TACATCAGAA
AGGTGATAAT GGAATCAGAG GAGAGTGACC TAACCAGAAT AGACCTCACG AACATACCTG GAGGCCAAGA AGCTTTCGAG
AAATTAGCGA AGTTTTGTTA CGGCGTCAAT TTCGAGATCA CCGTACACAA CGTCGCTCCG TTGCACTGCG CCGCCGTATT
CCTGCAGATG ACCGACGAAT ATTGCAACGG AAACCTCGCT GGAAGAACGG AGGATTTCCT CTCTCAGGTC GGCGTCTCCA
CTCTCCACAG CGCCGTCGCG GTCCTCAAGT CCTGCCAGCA GATTCTTCCC TTCGCCGCCG AAGTCAACCT CGTTGACCGC
TTCGTTGACG TAATTAGCTC CAAGGCTTGC AGTGAGGCGA ACTTTCCGAG CCAGTCCCCG CCGAACTGGT GGACGGAGGA
GCTCGCCGTG TTAGACGTAG ATTCCTTCGC GAAGGTGATT GCCTCCATGA AACAGCGCGG CGCTAAGTAT CTAACCATCG
CCGGAGCGTT GATCACATAC ACCGAACGCA CGCTGCGGGA GCTCGTCCGC GACCACAGCG GCGGCGGACG AGGAATCGTG
TCGTCAAATT CCGGCGATTC GGATTCGGAG TCGAGAAGAA GCGAACAACG CGAGATTCTG CAGTCTATTG TCCCGCTCTT
CCCGACGGAG AAAGCAGCGT TTCCAATCAA CTTCCTCTGC TGTCTCCTGC GGTGCGCGAT CTATCTCCGC GCGTCGAGTT
CGTGCAAGCG CGAACTCGAG AAGCGTGTCA CAGAGATCCT GGAGCACGTG ACGGTGGACG ACCTCCTCGT GATTACATTC
ACCTACGACG GCGAGAGGCT CTTGGATCTG GACAGCGTGA GGAGGATCGT CTCCGGCTTC GTGGAAAAGG AGAAGAGCAC
GACGGTGTTC AACGCAGGCG CCAACTTCAA CGAACACTTC TCCGCCGCGA TGCAGCGCGT GGCCAAAATC GTCGACGCCT
ACCTCGCTGA GATCGCCGCC TACGGCGAAC TCTCCATCTC TAAGTTCAAC GGCATATCCA TCCTCATTCC CAGAGGCGCT
AGAAAATCCG ACGATGATCT ATACCGCGCA GTCGATATCT ACCTCAAGGT ACACAGATTA CGTAATCTAG TTCCCAGAAA
AAAGGATTAA CTAAAGAAAA CGACAAGAAC GTTTTTTTAA TCACCGTACT TAGTTGCTTG TTTATCTAAA TTTTTAGTTT
GAATTATACC TTTATTAATT TTAACTGAAA GAAAATTATA TTAAAATTTG TCTAAAATAT CATTAATCAT ACAATTTCTT
TCGTACAAGA ATTACAAATT GGAATTTAGC AAAGGCACAG TCTAACCTAG ACCTAATCAG TGATGAAGTA ACTAACTAAT
TCCACAAGCG CTCACTCGTG TTGTTGCAGG TGCACCCGGA CCTGGACGAG ATAGAGAAGG AGAAGGTGTG CAGTGTAATG
GACCCACTGA AACTATCATA CGAGGCGCGT GTGCACGCGT CGAAGAACAA GCGATTGCCG TTGCAGATCG TGCTTCACGC
GCTGTATTAC GACCAACTAC ACCTAAGGAG TGGTATGGCA GAGGACAAGG AGGCGGTGGC GGTGGCAGCT GCAGTGGAGA
AGAAACAGCT TCAAGCTGAC GTGTCGCTGG TGAGGGAGAA CGAGGAGTTG CGATCGGAAC TGATGAAGAT GAAAATGTAC
ATTACCGATT TGCAGAAAAA TGTGCAAGGA ACGTCGTCGT CTGGGAAGGA AACTGCTGGG CCTGCTAAAA GGCCCACATT
TTTCTCATCC ATGTCGAAGA AACTGAGCAA ATTGAACCCG TTCAAGAATG GGTCTAAGGA CACGTCACAC ATCGACGATG
CCCCGGTGGA CTTGACCAAG CCCAGAAGGC GAAGGTTCTC CATTTCCTAG ATTTCTTCCA GTCAGCCACC GTCTCTGTTC
TTACTGAATT CAAATTTCCA TGTTTTTTTA GTCAAAATAC ATCCCTCCTC GTTAAAAGTA TTTTTTTTTT AAATTAGTTA
CGTTTCTTTT TGTCTTTATT GTTATTTTTT TTGTAATGAA GGTGTCAATT TGTAATTAAT AAAAAGAGTG AAGTGTGATT
GGATTTCTTA TACTAGTTTC AGTGTGAATT AATGATAATT ACAATTCAAT GTTCTGATTG GAC

>Vigan.03G104400.01
TGAAGAGTGT GATACTCTCA GCTTAAAAAG GAATCACTTT AATGAAAGGA TAAATAAGAT AACAACAAGT CAGTGAAAAG
AAAGCATGCC AGACTTGGAC CACAGTGACA AACTCAACTC ATTACTAGAC AACAATTACA ATAATGAAAT GAATGTACAG
GAATCGAAAA TCTCCTTATA GCAGCAACTA AGCATATCAT ATAACAAGCA GTTACTCTCA AACTCCTAAT CCTATTCAGA
CCACGAAAAA CCAAGAAACA TCATCCATGG CAACCCCCAG CCCCACCAGA TTATCCCTTG CCATGGAGAG AACCGGGCAA
TGGATTTTCT CCCCAGAAAT CCCAGCCGAT GTTATTGTTA CAGTAGGGGA AGCCGATTTT TCTCTACACA AGTTTATTCT
GGCGGCAAAG AGCAACTACA TCAGAAAGGT GATAATGGAA TCAGAGGAGA GTGACCTAAC CAGAATAGAC CTCACGAACA
TACCTGGAGG CCAAGAAGCT TTCGAGAAAT TAGCGAAGTT TTGTTACGGC GTCAATTTCG AGATCACCGT ACACAACGTC
GCTCCGTTGC ACTGCGCCGC CGTATTCCTG CAGATGACCG ACGAATATTG CAACGGAAAC CTCGCTGGAA GAACGGAGGA
TTTCCTCTCT CAGGTCGGCG TCTCCACTCT CCACAGCGCC GTCGCGGTCC TCAAGTCCTG CCAGCAGATT CTTCCCTTCG
CCGCCGAAGT CAACCTCGTT GACCGCTTCG TTGACGTAAT TAGCTCCAAG GCTTGCAGTG AGGCGAACTT TCCGAGCCAG
TCCCCGCCGA ACTGGTGGAC GGAGGAGCTC GCCGTGTTAG ACGTAGATTC CTTCGCGAAG GTGATTGCCT CCATGAAACA
GCGCGGCGCT AAGTATCTAA CCATCGCCGG AGCGTTGATC ACATACACCG AACGCACGCT GCGGGAGCTC GTCCGCGACC
ACAGCGGCGG CGGACGAGGA ATCGTGTCGT CAAATTCCGG CGATTCGGAT TCGGAGTCGA GAAGAAGCGA ACAACGCGAG
ATTCTGCAGT CTATTGTCCC GCTCTTCCCG ACGGAGAAAG CAGCGTTTCC AATCAACTTC CTCTGCTGTC TCCTGCGGTG
CGCGATCTAT CTCCGCGCGT CGAGTTCGTG CAAGCGCGAA CTCGAGAAGC GTGTCACAGA GATCCTGGAG CACGTGACGG
TGGACGACCT CCTCGTGATT ACATTCACCT ACGACGGCGA GAGGCTCTTG GATCTGGACA GCGTGAGGAG GATCGTCTCC
GGCTTCGTGG AAAAGGAGAA GAGCACGACG GTGTTCAACG CAGGCGCCAA CTTCAACGAA CACTTCTCCG CCGCGATGCA
GCGCGTGGCC AAAATCGTCG ACGCCTACCT CGCTGAGATC GCCGCCTACG GCGAACTCTC CATCTCTAAG TTCAACGGCA
TATCCATCCT CATTCCCAGA GGCGCTAGAA AATCCGACGA TGATCTATAC CGCGCAGTCG ATATCTACCT CAAGGTGCAC
CCGGACCTGG ACGAGATAGA GAAGGAGAAG GTGTGCAGTG TAATGGACCC ACTGAAACTA TCATACGAGG CGCGTGTGCA
CGCGTCGAAG AACAAGCGAT TGCCGTTGCA GATCGTGCTT CACGCGCTGT ATTACGACCA ACTACACCTA AGGAGTGGTA
TGGCAGAGGA CAAGGAGGCG GTGGCGGTGG CAGCTGCAGT GGAGAAGAAA CAGCTTCAAG CTGACGTGTC GCTGGTGAGG
GAGAACGAGG AGTTGCGATC GGAACTGATG AAGATGAAAA TGTACATTAC CGATTTGCAG AAAAATGTGC AAGGAACGTC
GTCGTCTGGG AAGGAAACTG CTGGGCCTGC TAAAAGGCCC ACATTTTTCT CATCCATGTC GAAGAAACTG AGCAAATTGA
ACCCGTTCAA GAATGGGTCT AAGGACACGT CACACATCGA CGATGCCCCG GTGGACTTGA CCAAGCCCAG AAGGCGAAGG
TTCTCCATTT CCTAGATTTC TTCCAGTCAG CCACCGTCTC TGTTCTTACT GAATTCAAAT TTCCATGTTT TTTTAGTCAA
AATACATCCC TCCTCGTTAA AAGTATTTTT TTTTTAAATT AGTTACGTTT CTTTTTGTCT TTATTGTTAT TTTTTTTGTA
ATGAAGGTGT CAATTTGTAA TTAATAAAAA GAGTGAAGTG TGATTGGATT TCTTATACTA GTTTCAGTGT GAATTAATGA
TAATTACAAT TCAATGTTCT GATTGGAC

>Vigan.03G104400.01
ATGGCAACCC CCAGCCCCAC CAGATTATCC CTTGCCATGG AGAGAACCGG GCAATGGATT TTCTCCCCAG AAATCCCAGC
CGATGTTATT GTTACAGTAG GGGAAGCCGA TTTTTCTCTA CACAAGTTTA TTCTGGCGGC AAAGAGCAAC TACATCAGAA
AGGTGATAAT GGAATCAGAG GAGAGTGACC TAACCAGAAT AGACCTCACG AACATACCTG GAGGCCAAGA AGCTTTCGAG
AAATTAGCGA AGTTTTGTTA CGGCGTCAAT TTCGAGATCA CCGTACACAA CGTCGCTCCG TTGCACTGCG CCGCCGTATT
CCTGCAGATG ACCGACGAAT ATTGCAACGG AAACCTCGCT GGAAGAACGG AGGATTTCCT CTCTCAGGTC GGCGTCTCCA
CTCTCCACAG CGCCGTCGCG GTCCTCAAGT CCTGCCAGCA GATTCTTCCC TTCGCCGCCG AAGTCAACCT CGTTGACCGC
TTCGTTGACG TAATTAGCTC CAAGGCTTGC AGTGAGGCGA ACTTTCCGAG CCAGTCCCCG CCGAACTGGT GGACGGAGGA
GCTCGCCGTG TTAGACGTAG ATTCCTTCGC GAAGGTGATT GCCTCCATGA AACAGCGCGG CGCTAAGTAT CTAACCATCG
CCGGAGCGTT GATCACATAC ACCGAACGCA CGCTGCGGGA GCTCGTCCGC GACCACAGCG GCGGCGGACG AGGAATCGTG
TCGTCAAATT CCGGCGATTC GGATTCGGAG TCGAGAAGAA GCGAACAACG CGAGATTCTG CAGTCTATTG TCCCGCTCTT
CCCGACGGAG AAAGCAGCGT TTCCAATCAA CTTCCTCTGC TGTCTCCTGC GGTGCGCGAT CTATCTCCGC GCGTCGAGTT
CGTGCAAGCG CGAACTCGAG AAGCGTGTCA CAGAGATCCT GGAGCACGTG ACGGTGGACG ACCTCCTCGT GATTACATTC
ACCTACGACG GCGAGAGGCT CTTGGATCTG GACAGCGTGA GGAGGATCGT CTCCGGCTTC GTGGAAAAGG AGAAGAGCAC
GACGGTGTTC AACGCAGGCG CCAACTTCAA CGAACACTTC TCCGCCGCGA TGCAGCGCGT GGCCAAAATC GTCGACGCCT
ACCTCGCTGA GATCGCCGCC TACGGCGAAC TCTCCATCTC TAAGTTCAAC GGCATATCCA TCCTCATTCC CAGAGGCGCT
AGAAAATCCG ACGATGATCT ATACCGCGCA GTCGATATCT ACCTCAAGGT GCACCCGGAC CTGGACGAGA TAGAGAAGGA
GAAGGTGTGC AGTGTAATGG ACCCACTGAA ACTATCATAC GAGGCGCGTG TGCACGCGTC GAAGAACAAG CGATTGCCGT
TGCAGATCGT GCTTCACGCG CTGTATTACG ACCAACTACA CCTAAGGAGT GGTATGGCAG AGGACAAGGA GGCGGTGGCG
GTGGCAGCTG CAGTGGAGAA GAAACAGCTT CAAGCTGACG TGTCGCTGGT GAGGGAGAAC GAGGAGTTGC GATCGGAACT
GATGAAGATG AAAATGTACA TTACCGATTT GCAGAAAAAT GTGCAAGGAA CGTCGTCGTC TGGGAAGGAA ACTGCTGGGC
CTGCTAAAAG GCCCACATTT TTCTCATCCA TGTCGAAGAA ACTGAGCAAA TTGAACCCGT TCAAGAATGG GTCTAAGGAC
ACGTCACACA TCGACGATGC CCCGGTGGAC TTGACCAAGC CCAGAAGGCG AAGGTTCTCC ATTTCCTAG

>Vigan.03G104400.01
MATPSPTRLS LAMERTGQWI FSPEIPADVI VTVGEADFSL HKFILAAKSN YIRKVIMESE ESDLTRIDLT NIPGGQEAFE
KLAKFCYGVN FEITVHNVAP LHCAAVFLQM TDEYCNGNLA GRTEDFLSQV GVSTLHSAVA VLKSCQQILP FAAEVNLVDR
FVDVISSKAC SEANFPSQSP PNWWTEELAV LDVDSFAKVI ASMKQRGAKY LTIAGALITY TERTLRELVR DHSGGGRGIV
SSNSGDSDSE SRRSEQREIL QSIVPLFPTE KAAFPINFLC CLLRCAIYLR ASSSCKRELE KRVTEILEHV TVDDLLVITF
TYDGERLLDL DSVRRIVSGF VEKEKSTTVF NAGANFNEHF SAAMQRVAKI VDAYLAEIAA YGELSISKFN GISILIPRGA
RKSDDDLYRA VDIYLKVHPD LDEIEKEKVC SVMDPLKLSY EARVHASKNK RLPLQIVLHA LYYDQLHLRS GMAEDKEAVA
VAAAVEKKQL QADVSLVREN EELRSELMKM KMYITDLQKN VQGTSSSGKE TAGPAKRPTF FSSMSKKLSK LNPFKNGSKD
TSHIDDAPVD LTKPRRRRFS IS*