GBrowse Details

Vigan.03G094300.01

Basic Information:
Name: Vigan.03G094300.01
Multiple alignment
Variant Information
Position: Chr03:9552836..9554968 (+ strand)
Length: 2133
Functional Information:
Description: Similar to Uncharacterized protein. [I1JHW4, Glycine max]
GO: Biological Process: nucleosome assembly (GO:0006334)
Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: chromatin (GO:0000785)
Cellular Component: nucleosome (GO:0000786)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
InterPro: High mobility group, HMG-I/HMG-Y (IPR000116)
Linker histone H1/H5, domain H15 (IPR005818)
Winged helix-turn-helix DNA-binding domain (IPR011991)
AT hook, DNA-binding motif (IPR017956)
AT hook-like (IPR020478)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.32,21.45,48.68,15.18,44.26,50.26, 39.56,13.11
Automatic updates:
Name: NM_001360349 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max HMG-Y-related protein B (LOC100802642), mRNA.
PubMed ID: 1891368 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:9552836..9553240 (+ strand)
Length: 405
Type: five_prime_UTR
Position: Chr03:9553241..9553291 (+ strand)
Length: 51
Type: CDS
Position: Chr03:9553642..9554121 (+ strand)
Length: 480
Type: CDS
Position: Chr03:9554122..9554968 (+ strand)
Length: 847
Type: three_prime_UTR

>Vigan.03G094300.01 class=Sequence position=Chr03:9552836..9554968 (+ strand)
GAACGAACCA AAAGACAAGA GGTACCTTCA AATATTTCTG CGAACAAGCA CATTCTGCCA CGTCATCGAT CCGAGTGACC
TTCCGCAAAT ATATCTTAAG CCGTCGGATA GCCATCCTTT GTTTATTCCT AGCCGTCCAT TTTCACGAAA AGATGAACAA
AGGATAGTTG TAACAGAGGG ATGAAATTTT TTTCTTTATC TTTTTAATTA AATTTCTTTC CAATTTTTAA TTTATTTATG
CTCCTTTAAA TTCAATCCTC AGATCCTTGC TAGAGTCATC CGTATCATAC TCTTCACTTT CCTTAAATTT TTTTAACCTT
CCTCTATTAA AGTTTCCAGA TTTTTGGTGG GGTTCGTTGA GGGTACTGTG CAAGCTTTTC AGCGTCTTCA CAGCCTGCAA
CTTCGATGGC CACTGAAGAG GTTAATAAAC CTCAGTCACT TCCTCCATAC CCCGAGGTAA TTTTACACCA AAATCCAGCT
TCTAATTTTG AGTTTTTTCT TTCCATAATG AAAATTTCGA ACATATTTCC TACCAAAGCT GTAGATTTCT CACTGATCTA
ACTGATCTAT ACATTTTCAC CAACTTGGGT TTCTTGTTTT GCCCACCCTG CTCGATTTTT AGCACTTGTT GAGATTTTCG
AGGAACTTAA GAAACCGGGA AAGAAAAAAA TGGTTTTAAT TTATTTGGCC TGTTATGATT GTTTTGTATT CGTGCAAACT
CAGGACGCGC GAGTCGTGAT TTTCCGATAG AGACTTCGTT TTTTGAGAAA CTTCTATTTT GTTAACTTTG GGTGGTGTTG
ATGTAGCTGA TACTGAAAGC GATTGAAGCT CTGAGTGAAC CAAGTGGATC CAGCAAATCA GCAATATCAA AGTACATAGA
AGCGATCTAT GGTGAGTTGA CAGACTCAAC CGTTTTGGGT AATGAACTGA ACAAGATGAA AGAGAGTGGA GAGCTTGTGT
TCAATAAGAA CAACTACATG AAAGCTGACC CAAGTGCCCC ACCAAAGAGG GGCCGTGGAA GACCACCAAA GCCAAAGGCC
CCTGTGCCAC CAGGCACCGT CGTCTCCCCT CCGCGACCAA GGGGTCGTCC CCCAAAGGAC CCAAACGCGC CTCCGAAGTC
TCCAAAGCCA AAGCCCACCC CTGGAAGTGG CAGGCCAAGG GGGAGGCCAA AGAAGATTCC TCGGTCTCCG ACGGCGGCGT
ATCCGGCCGC CGTATCCAGC GGAAGGCCCA GGGGTAGGCC TCCAAAGGTG AAGCCTCAGT TGACAGAAGT GAGCGTTGAG
TCATAGATTT GTTTCTTTAT TTGGGTGCCG AATGTAGTGT TCCTACTCTT TATAAGTGGT CGGTGTGAGT TTAGATTCTG
TGTTGATGTA ATTTCGTTGT AAAATTATGT AGTGGTAGCT GACTTACTAA GAGGCTTTCG TGTTTGTCTT CCCTCCCGAT
CATCGAAAGA GAACAGTATC TTGTGCTAAT TCTGGCGTTC TAACTTGTGA ACCCATGATG TAGAAAAAAG GTTGCTGTTT
GAGAATTAAT GTGGTTATTT ATCTGGGTAG ATCCGTGCCA TAATACATTT AAAGGGAATC GGACAACGTA GCAGGACCCT
AGAGACTGAA AAAGGAGAGT CTGGTAGTGA TGATGTAATA AATTTGACCG TGTTTGATAT ATGGACATGA ACCTATGGAG
GAACCTCGTA CGACACAATC TGTTTTCCCA TGTTTCTGTG GATAAGACAT CTCCAGCGTG GTGTGAAGTC GTTGTTGTTT
CCTTGAAGGG GGAAATAAGA CGGTCTGGTT TGACCGGCAA GCCTAGTGCC TGTATTATCT TTCCATCATC TTAACTGTGA
GGGTGACATA AATTGGTAAT GTCAGCAATG TAATTATCTG CTTAGTCACG TTTTGGGATT AAAACTTGGG GTCATGAAAT
CTTATGGACA TTGAAGCTTT GGAATCTCCT TCATTGGTTT GTGTCTAGCA TCTTGGATGT GACGTCGTTT AACCTCGCGA
TGTTGTATAA ATTACTGTCT CCTGATTATT GAATTATGAG ACCATATGTT ATGTGTCATC CATGTATTTG ATGTCCAGTA
TGTTTGTTCA ATTGTAATAA TCTTCAATCC CAGAAAAAAA TTATTTGGGA GTT

>Vigan.03G094300.01
GAACGAACCA AAAGACAAGA GGTACCTTCA AATATTTCTG CGAACAAGCA CATTCTGCCA CGTCATCGAT CCGAGTGACC
TTCCGCAAAT ATATCTTAAG CCGTCGGATA GCCATCCTTT GTTTATTCCT AGCCGTCCAT TTTCACGAAA AGATGAACAA
AGGATAGTTG TAACAGAGGG ATGAAATTTT TTTCTTTATC TTTTTAATTA AATTTCTTTC CAATTTTTAA TTTATTTATG
CTCCTTTAAA TTCAATCCTC AGATCCTTGC TAGAGTCATC CGTATCATAC TCTTCACTTT CCTTAAATTT TTTTAACCTT
CCTCTATTAA AGTTTCCAGA TTTTTGGTGG GGTTCGTTGA GGGTACTGTG CAAGCTTTTC AGCGTCTTCA CAGCCTGCAA
CTTCGATGGC CACTGAAGAG GTTAATAAAC CTCAGTCACT TCCTCCATAC CCCGAGCTGA TACTGAAAGC GATTGAAGCT
CTGAGTGAAC CAAGTGGATC CAGCAAATCA GCAATATCAA AGTACATAGA AGCGATCTAT GGTGAGTTGA CAGACTCAAC
CGTTTTGGGT AATGAACTGA ACAAGATGAA AGAGAGTGGA GAGCTTGTGT TCAATAAGAA CAACTACATG AAAGCTGACC
CAAGTGCCCC ACCAAAGAGG GGCCGTGGAA GACCACCAAA GCCAAAGGCC CCTGTGCCAC CAGGCACCGT CGTCTCCCCT
CCGCGACCAA GGGGTCGTCC CCCAAAGGAC CCAAACGCGC CTCCGAAGTC TCCAAAGCCA AAGCCCACCC CTGGAAGTGG
CAGGCCAAGG GGGAGGCCAA AGAAGATTCC TCGGTCTCCG ACGGCGGCGT ATCCGGCCGC CGTATCCAGC GGAAGGCCCA
GGGGTAGGCC TCCAAAGGTG AAGCCTCAGT TGACAGAAGT GAGCGTTGAG TCATAGATTT GTTTCTTTAT TTGGGTGCCG
AATGTAGTGT TCCTACTCTT TATAAGTGGT CGGTGTGAGT TTAGATTCTG TGTTGATGTA ATTTCGTTGT AAAATTATGT
AGTGGTAGCT GACTTACTAA GAGGCTTTCG TGTTTGTCTT CCCTCCCGAT CATCGAAAGA GAACAGTATC TTGTGCTAAT
TCTGGCGTTC TAACTTGTGA ACCCATGATG TAGAAAAAAG GTTGCTGTTT GAGAATTAAT GTGGTTATTT ATCTGGGTAG
ATCCGTGCCA TAATACATTT AAAGGGAATC GGACAACGTA GCAGGACCCT AGAGACTGAA AAAGGAGAGT CTGGTAGTGA
TGATGTAATA AATTTGACCG TGTTTGATAT ATGGACATGA ACCTATGGAG GAACCTCGTA CGACACAATC TGTTTTCCCA
TGTTTCTGTG GATAAGACAT CTCCAGCGTG GTGTGAAGTC GTTGTTGTTT CCTTGAAGGG GGAAATAAGA CGGTCTGGTT
TGACCGGCAA GCCTAGTGCC TGTATTATCT TTCCATCATC TTAACTGTGA GGGTGACATA AATTGGTAAT GTCAGCAATG
TAATTATCTG CTTAGTCACG TTTTGGGATT AAAACTTGGG GTCATGAAAT CTTATGGACA TTGAAGCTTT GGAATCTCCT
TCATTGGTTT GTGTCTAGCA TCTTGGATGT GACGTCGTTT AACCTCGCGA TGTTGTATAA ATTACTGTCT CCTGATTATT
GAATTATGAG ACCATATGTT ATGTGTCATC CATGTATTTG ATGTCCAGTA TGTTTGTTCA ATTGTAATAA TCTTCAATCC
CAGAAAAAAA TTATTTGGGA GTT

>Vigan.03G094300.01
ATGGCCACTG AAGAGGTTAA TAAACCTCAG TCACTTCCTC CATACCCCGA GCTGATACTG AAAGCGATTG AAGCTCTGAG
TGAACCAAGT GGATCCAGCA AATCAGCAAT ATCAAAGTAC ATAGAAGCGA TCTATGGTGA GTTGACAGAC TCAACCGTTT
TGGGTAATGA ACTGAACAAG ATGAAAGAGA GTGGAGAGCT TGTGTTCAAT AAGAACAACT ACATGAAAGC TGACCCAAGT
GCCCCACCAA AGAGGGGCCG TGGAAGACCA CCAAAGCCAA AGGCCCCTGT GCCACCAGGC ACCGTCGTCT CCCCTCCGCG
ACCAAGGGGT CGTCCCCCAA AGGACCCAAA CGCGCCTCCG AAGTCTCCAA AGCCAAAGCC CACCCCTGGA AGTGGCAGGC
CAAGGGGGAG GCCAAAGAAG ATTCCTCGGT CTCCGACGGC GGCGTATCCG GCCGCCGTAT CCAGCGGAAG GCCCAGGGGT
AGGCCTCCAA AGGTGAAGCC TCAGTTGACA GAAGTGAGCG TTGAGTCATA G

>Vigan.03G094300.01
MATEEVNKPQ SLPPYPELIL KAIEALSEPS GSSKSAISKY IEAIYGELTD STVLGNELNK MKESGELVFN KNNYMKADPS
APPKRGRGRP PKPKAPVPPG TVVSPPRPRG RPPKDPNAPP KSPKPKPTPG SGRPRGRPKK IPRSPTAAYP AAVSSGRPRG
RPPKVKPQLT EVSVES*