GBrowse Details

Vigan.03G061900.01

Basic Information:
Name: Vigan.03G061900.01
Multiple alignment
Variant Information
Position: Chr03:6027725..6031680 (- strand)
Length: 3956
Functional Information:
Description: Similar to Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1. [XP_007018621.1, Theobroma cacao]
InterPro: Alkaline phosphatase D-related (IPR018946)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.11,2.38,1.76,2.32,1.50,0.73,3.72,3.29
Arabidopsis thaliana homolog: AT5G42370.2
Automatic updates:
Name: NM_001317617 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100801460 (LOC100801460), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:6027725..6028117 (- strand)
Length: 393
Type: three_prime_UTR
Position: Chr03:6028118..6028200 (- strand)
Length: 83
Type: CDS
Position: Chr03:6028325..6028579 (- strand)
Length: 255
Type: CDS
Position: Chr03:6028663..6028891 (- strand)
Length: 229
Type: CDS
Position: Chr03:6029030..6029137 (- strand)
Length: 108
Type: CDS
Position: Chr03:6029324..6029464 (- strand)
Length: 141
Type: CDS
Position: Chr03:6029707..6029767 (- strand)
Length: 61
Type: CDS
Position: Chr03:6030035..6030156 (- strand)
Length: 122
Type: CDS
Position: Chr03:6030310..6030537 (- strand)
Length: 228
Type: CDS
Position: Chr03:6031414..6031581 (- strand)
Length: 168
Type: CDS
Position: Chr03:6031582..6031680 (- strand)
Length: 99
Type: five_prime_UTR

>Vigan.03G061900.01 class=Sequence position=Chr03:6027725..6031680 (- strand)
GTTTCATTTT GTGTCTGCCA TTGGTCTCAA ATTGTGAGAA AGTTCCCTTT TTATGATCTC TGAGAAAGAA CTGAATTCGA
AGTCGTGGTT TTTGCGCAAA TGGGTATCGA TCAACGTCTG CGGCGGAGCC GGTGGTGGAA CGCCGTTGTT TTTATCGGAA
TGGTCAGCTT TACAGTAACC GTTACCAGTT CCGACAGTCA CGAGAAGCAG GAACAAGTGG TCTCCCGAAT TGCCTTCGGA
TCATGCTCCA ACCAGAGCGC TCCTCAGGTT TCAAAAAATT TTCCTATTTT GTTATGCTTT TTTGTTTGTT ATTTTTTCTA
CTTTTTATTC TTGTTTTGTC TTTTCTTTGT TTTATTTTTA CCCATTCTGC AGTGTCGTGT AATGGAACTG ATATACTAGT
TATTCTGTTT CTTTGTTCCA ACCACGATAT CTCAATTCTT GTACTAACAT GCTGTTGGAG TCCCAGTATT ACGTCAGCTT
TAAGCGAACT GCAGCTCTTT TGTACTCAAC TTAAAAAAAG AAACAGCAAT AATAACAACC ACGACAATTA TGTAAATTTC
TGTGAACAAA AGAAATTTGA TTAATTTTAT GTAACAAATA ATAAACCAAC TGTTTCTGTT TATAATTAAT TTTCCTTGGA
TTCTGGAACC TGTTCCCTGT TTGTAAGAAT TCTTGGTGGG GATGATAAGG AATGTATAAT TTTTCACGAA AGAGTGAGAT
GCATCTGAAA CTTCGTTTTA TCCCAATTTT TAGAAGAATT CAAAATTCAT TATGCAGTAG ACAACTTCAA TAAATGGTGT
ATTTCACCCT TCTGCCACTG AAAATCAATC ATTCGTGCTG AACCAAAACT AGACAACTTT TTATTTTACG CTGTACTTGG
CAGTATGCAA CTGTATGGTC TTTTATAGTA TTTCTTAATC AAGCCAACAA AATTGTATTT CATCTGCCGC AACTAAATTC
AAGAAATCAC AGGGCTAAGC TTTAGTGTTT TTTTGGTTGT AGTTTGGGTT TACAAATCGT ACAGCTTTAG ACTAAAATCC
TAATATCTGT TACTATTTAG GCTTCTAATT GCTACGATTT CTGGGTGTTG TTAACTTCTT CATGTCAGAT CATTAACGTA
TGTGTATGCT GTGTGTTTGC CAGCCCATTT GGGATGCAGT GGCGGACTTC CGTCCCCAAA TTTTTATATG GCTGGGTGAT
AACATTTACG GGGACTCCAA ACGCCCTTTC AAAGTATTTG GACGGGAAAG GACTGTTGGG CCATGGAAGA ATGTTCCACG
ATTTGTTCCT TCTTCTGAGC AGGAAATGAA GGCTAGATAT GAAAAGGCTA AGTCTAGTCC TGGCTATATT CGACTTCATC
AGAATGCTAA GGTGTTTTAT TCTAAGATTT TCTATTTGTT ATTGTTTTCT AGTTGAGATT GTTATTGAAA GCACAATGTT
GAAATGCCTG TGGGCTGATT TACTAAAATG GTGATTATGT TTATTGGTAT CTTGGCCTGA CTTTCACATT TGGTTTGTTG
ATAGGTTATT GGTACATGGG ATGATCACGA TTATGGATTA AATGATGCAG GAAAAGAATT TCAAGGAAAA ATCACCAACC
AGAAGTTGCT TCTTGATTTC TTGGATGAAC CTCAAGATAG CCCACGGTAG GTGGATATGC ATTATTATGT TGGACTGATC
TTAACCTTGC ATTTTGTGTT ATTTGATTTG TTCTGCCTAA CTTATTGAAT CATTCTCTTG ATTATTGGGG TAGTTTTCTT
ATATGATGCT TACGGTTGTA TTGCATGTGA AAACTCTTTT TTCTTCATGG AGAGGAAAGA TTACATGTCT AGCAGATCAT
GTATTCACCC ATTCACAAAT TTTAATAGGA AGCAGATATT GATTTACATA CTTACCCTAT CTTCTCATTT CAGGCGGAAA
CAGGCTGGTG TATATGTCTC ATATACGTAT GGTCCTGTAG GTAGAGATAT CAAGGTATTG ACCAAATGTA ATATAATATT
CTTTCTCAAA TTCCTACAAT TTTTTCTATA TTATTGTCCC CTGGTAGGAT GGTAGCCATT ACTTGATCAT TTTAAATGTC
TTACATGAAG TTAAAACGCA CACTTTGTTT TTGTCAATAA TAAGACTTGA GAGTTGCTTT TAAATCGTGT TTTGACTTTT
AAGCACTCAT CTTGTGCTAA TACTGCTTTT ATTGCGGATT GTGGAAAACT TCTCAGATTG TACTCTTAGA TACTAGATAT
CACAGAGACC CTGTAGGAAG TGATGGTACC ATTTTGGGGA ATTCACAGTG GTTGTGGTTG GAGAAAGAGA TCAAGGGTCC
ACCAACGGCT CTTACCATAA TTGGATCTTC TATTCAGGTA CTACAATTAC TAATAGTGCC AGACATAGTT CAAAATTATT
CATAATAATA AACAAATGAT TTTTTATGAC ATCTGCATCT TTGAATTTTG GTTGCATCAT CAACTATTAT GCCTGTGTTT
TTGACAGCGT GTATCTAAAT TTGACTTGAA GTGATTACAT TATATAGTTA ATCTATATGT CAGGTTATAT CAAATCTTTC
GGCAACCATT CATCCATTGT TTGCAATGGA GTCATGGGGT CGTTTTCCAA AGGAAAGAGA CCGGCTATTT AAATTAATAG
CTGATAGTAA GGTAACAAGT TTCAGGACAT TCATATTCTA CTTCTATTTT CTGTTTTACA TCTTTGTTGT TAAAAGGAAT
TTACATTGTT ACCAATTATG TTGGTGAAGT GAGTACTCAT TTCACCTCTC ATTAGTCTTT TCTATGCAGA GAGCTGGAGT
ATTTTTTCTC AGTGGAGATG TGCACTTTGG GGAAATCACG AGATATGATT GTGCTGTGGG CTATCCACTT TATGATGTAA
CCTCAAGTGG GGTTACTCAA TCAGTCGAGG AAGTTGTCCC ACCTTTCCTG CGTTCTTTTG TGAGATTTGT TGCATTGTTG
ACCCCATCTA CAATGAGAGT AAAGGGCCAA CACTGCAGAT ACAAATCTTG TATATATGGT AAACTTTTCC TTCTTATTTT
TGGTAAGGAT ATTTATATTG TTTTTCATGC TTTTGATGTT TCAAATGTGG GTTTTCATTA GGTCAGCCAA ACTTTGGAAC
CATTGAAATA GATTGGGACT CTCACCCAGT GACTCTCAAG TTAAAAGTGA GGGACAAAGA GAGCATCATG GTTACAGGTG
TTGATGTTTC ATTGACGGAA TTGCAATCAT CAAATTCAGA GAGTTTTGAC AGAGAAAAGG CAGGTCATGA TAATCAAAAG
CATTGCACCC TTGAAGTTAG TCTGCCATGG TTTGTAAGAT ATCGCCTAGC GATCTTGTTC TTTTGCACCT TAATTGGTAA
GTCACTTCTC TAAGTTCCAC TAACAAAGCA AGTGATCATT TAGTTTGTAT GTCAATCTTT TAAGGTGGCA CGCTTAGTAT
TATAGTATGA TGATTAAATT GAACTCTTTC TTTGTTGCAG TGTTTCTTGT TGCATTCCTA GTGCTAGTTT ACACCTGCTT
CAGACTTTTC AGACTAGAAG GCTGCAAAAG AAAGCACGAT TGATGCAAGT AGATTCATGC ACAGTCAGCA AAAGGGAGCA
TGTCCTATCT CTTCTCCTTT TTTGTAGATT TAACATCTGT GGTTGTAGGT GAATAAGATG TATAGAATTC TTCTACTGTT
TCTACTAATC AATCCTTAAT CAATATGAAC AATTCGGGTG TATTTGAGTT ACATTTTCAG AAATTGTTTA GTTTTCAAAA
TATAGCTAAG CAAGGTTGTT CAGATAGATA GCTTGTGAAG GGTGGTGCAA GATACAAAAC TGGAATTGAG GGGAGAGGTT
TGTTGAACTA GATGGAAACA GAAATATATG AGAAAAATCT CCCTACTGTT TTTGTTTTGG ATGAGAATTT GATTGCTGAA
TGGTGAAAAA TTATTTTGGA AACAGTTTTT TTGAAA

>Vigan.03G061900.01
GTTTCATTTT GTGTCTGCCA TTGGTCTCAA ATTGTGAGAA AGTTCCCTTT TTATGATCTC TGAGAAAGAA CTGAATTCGA
AGTCGTGGTT TTTGCGCAAA TGGGTATCGA TCAACGTCTG CGGCGGAGCC GGTGGTGGAA CGCCGTTGTT TTTATCGGAA
TGGTCAGCTT TACAGTAACC GTTACCAGTT CCGACAGTCA CGAGAAGCAG GAACAAGTGG TCTCCCGAAT TGCCTTCGGA
TCATGCTCCA ACCAGAGCGC TCCTCAGCCC ATTTGGGATG CAGTGGCGGA CTTCCGTCCC CAAATTTTTA TATGGCTGGG
TGATAACATT TACGGGGACT CCAAACGCCC TTTCAAAGTA TTTGGACGGG AAAGGACTGT TGGGCCATGG AAGAATGTTC
CACGATTTGT TCCTTCTTCT GAGCAGGAAA TGAAGGCTAG ATATGAAAAG GCTAAGTCTA GTCCTGGCTA TATTCGACTT
CATCAGAATG CTAAGGTTAT TGGTACATGG GATGATCACG ATTATGGATT AAATGATGCA GGAAAAGAAT TTCAAGGAAA
AATCACCAAC CAGAAGTTGC TTCTTGATTT CTTGGATGAA CCTCAAGATA GCCCACGGCG GAAACAGGCT GGTGTATATG
TCTCATATAC GTATGGTCCT GTAGGTAGAG ATATCAAGAT TGTACTCTTA GATACTAGAT ATCACAGAGA CCCTGTAGGA
AGTGATGGTA CCATTTTGGG GAATTCACAG TGGTTGTGGT TGGAGAAAGA GATCAAGGGT CCACCAACGG CTCTTACCAT
AATTGGATCT TCTATTCAGG TTATATCAAA TCTTTCGGCA ACCATTCATC CATTGTTTGC AATGGAGTCA TGGGGTCGTT
TTCCAAAGGA AAGAGACCGG CTATTTAAAT TAATAGCTGA TAGTAAGAGA GCTGGAGTAT TTTTTCTCAG TGGAGATGTG
CACTTTGGGG AAATCACGAG ATATGATTGT GCTGTGGGCT ATCCACTTTA TGATGTAACC TCAAGTGGGG TTACTCAATC
AGTCGAGGAA GTTGTCCCAC CTTTCCTGCG TTCTTTTGTG AGATTTGTTG CATTGTTGAC CCCATCTACA ATGAGAGTAA
AGGGCCAACA CTGCAGATAC AAATCTTGTA TATATGGTCA GCCAAACTTT GGAACCATTG AAATAGATTG GGACTCTCAC
CCAGTGACTC TCAAGTTAAA AGTGAGGGAC AAAGAGAGCA TCATGGTTAC AGGTGTTGAT GTTTCATTGA CGGAATTGCA
ATCATCAAAT TCAGAGAGTT TTGACAGAGA AAAGGCAGGT CATGATAATC AAAAGCATTG CACCCTTGAA GTTAGTCTGC
CATGGTTTGT AAGATATCGC CTAGCGATCT TGTTCTTTTG CACCTTAATT GTGTTTCTTG TTGCATTCCT AGTGCTAGTT
TACACCTGCT TCAGACTTTT CAGACTAGAA GGCTGCAAAA GAAAGCACGA TTGATGCAAG TAGATTCATG CACAGTCAGC
AAAAGGGAGC ATGTCCTATC TCTTCTCCTT TTTTGTAGAT TTAACATCTG TGGTTGTAGG TGAATAAGAT GTATAGAATT
CTTCTACTGT TTCTACTAAT CAATCCTTAA TCAATATGAA CAATTCGGGT GTATTTGAGT TACATTTTCA GAAATTGTTT
AGTTTTCAAA ATATAGCTAA GCAAGGTTGT TCAGATAGAT AGCTTGTGAA GGGTGGTGCA AGATACAAAA CTGGAATTGA
GGGGAGAGGT TTGTTGAACT AGATGGAAAC AGAAATATAT GAGAAAAATC TCCCTACTGT TTTTGTTTTG GATGAGAATT
TGATTGCTGA ATGGTGAAAA ATTATTTTGG AAACAGTTTT TTTGAAA

>Vigan.03G061900.01
ATGGGTATCG ATCAACGTCT GCGGCGGAGC CGGTGGTGGA ACGCCGTTGT TTTTATCGGA ATGGTCAGCT TTACAGTAAC
CGTTACCAGT TCCGACAGTC ACGAGAAGCA GGAACAAGTG GTCTCCCGAA TTGCCTTCGG ATCATGCTCC AACCAGAGCG
CTCCTCAGCC CATTTGGGAT GCAGTGGCGG ACTTCCGTCC CCAAATTTTT ATATGGCTGG GTGATAACAT TTACGGGGAC
TCCAAACGCC CTTTCAAAGT ATTTGGACGG GAAAGGACTG TTGGGCCATG GAAGAATGTT CCACGATTTG TTCCTTCTTC
TGAGCAGGAA ATGAAGGCTA GATATGAAAA GGCTAAGTCT AGTCCTGGCT ATATTCGACT TCATCAGAAT GCTAAGGTTA
TTGGTACATG GGATGATCAC GATTATGGAT TAAATGATGC AGGAAAAGAA TTTCAAGGAA AAATCACCAA CCAGAAGTTG
CTTCTTGATT TCTTGGATGA ACCTCAAGAT AGCCCACGGC GGAAACAGGC TGGTGTATAT GTCTCATATA CGTATGGTCC
TGTAGGTAGA GATATCAAGA TTGTACTCTT AGATACTAGA TATCACAGAG ACCCTGTAGG AAGTGATGGT ACCATTTTGG
GGAATTCACA GTGGTTGTGG TTGGAGAAAG AGATCAAGGG TCCACCAACG GCTCTTACCA TAATTGGATC TTCTATTCAG
GTTATATCAA ATCTTTCGGC AACCATTCAT CCATTGTTTG CAATGGAGTC ATGGGGTCGT TTTCCAAAGG AAAGAGACCG
GCTATTTAAA TTAATAGCTG ATAGTAAGAG AGCTGGAGTA TTTTTTCTCA GTGGAGATGT GCACTTTGGG GAAATCACGA
GATATGATTG TGCTGTGGGC TATCCACTTT ATGATGTAAC CTCAAGTGGG GTTACTCAAT CAGTCGAGGA AGTTGTCCCA
CCTTTCCTGC GTTCTTTTGT GAGATTTGTT GCATTGTTGA CCCCATCTAC AATGAGAGTA AAGGGCCAAC ACTGCAGATA
CAAATCTTGT ATATATGGTC AGCCAAACTT TGGAACCATT GAAATAGATT GGGACTCTCA CCCAGTGACT CTCAAGTTAA
AAGTGAGGGA CAAAGAGAGC ATCATGGTTA CAGGTGTTGA TGTTTCATTG ACGGAATTGC AATCATCAAA TTCAGAGAGT
TTTGACAGAG AAAAGGCAGG TCATGATAAT CAAAAGCATT GCACCCTTGA AGTTAGTCTG CCATGGTTTG TAAGATATCG
CCTAGCGATC TTGTTCTTTT GCACCTTAAT TGTGTTTCTT GTTGCATTCC TAGTGCTAGT TTACACCTGC TTCAGACTTT
TCAGACTAGA AGGCTGCAAA AGAAAGCACG ATTGA

>Vigan.03G061900.01
MGIDQRLRRS RWWNAVVFIG MVSFTVTVTS SDSHEKQEQV VSRIAFGSCS NQSAPQPIWD AVADFRPQIF IWLGDNIYGD
SKRPFKVFGR ERTVGPWKNV PRFVPSSEQE MKARYEKAKS SPGYIRLHQN AKVIGTWDDH DYGLNDAGKE FQGKITNQKL
LLDFLDEPQD SPRRKQAGVY VSYTYGPVGR DIKIVLLDTR YHRDPVGSDG TILGNSQWLW LEKEIKGPPT ALTIIGSSIQ
VISNLSATIH PLFAMESWGR FPKERDRLFK LIADSKRAGV FFLSGDVHFG EITRYDCAVG YPLYDVTSSG VTQSVEEVVP
PFLRSFVRFV ALLTPSTMRV KGQHCRYKSC IYGQPNFGTI EIDWDSHPVT LKLKVRDKES IMVTGVDVSL TELQSSNSES
FDREKAGHDN QKHCTLEVSL PWFVRYRLAI LFFCTLIVFL VAFLVLVYTC FRLFRLEGCK RKHD*