GBrowse Details

Vigan.03G054100.01

Basic Information:
Name: Vigan.03G054100.01
Multiple alignment
Variant Information
Position: Chr03:5117880..5124667 (- strand)
Length: 6788
Functional Information:
Description: Similar to Uncharacterized protein. [I1JIS3, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: exonuclease activity (GO:0004527)
InterPro: Exonuclease (IPR006055)
Ribonuclease H-like domain (IPR012337)
Exonuclease, RNase T/DNA polymerase III (IPR013520)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.69,7.55,10.70,12.80,9.36,13.90,10 .18,10.80
Arabidopsis thaliana homolog: AT2G26970.1
Automatic updates:
Name: NM_001251613 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527858 (LOC100527858), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:5117880..5118085 (- strand)
Length: 206
Type: three_prime_UTR
Position: Chr03:5118086..5118204 (- strand)
Length: 119
Type: CDS
Position: Chr03:5119241..5119331 (- strand)
Length: 91
Type: CDS
Position: Chr03:5119770..5119862 (- strand)
Length: 93
Type: CDS
Position: Chr03:5121171..5121226 (- strand)
Length: 56
Type: CDS
Position: Chr03:5121467..5121548 (- strand)
Length: 82
Type: CDS
Position: Chr03:5122207..5122283 (- strand)
Length: 77
Type: CDS
Position: Chr03:5123154..5123288 (- strand)
Length: 135
Type: CDS
Position: Chr03:5124457..5124529 (- strand)
Length: 73
Type: CDS
Position: Chr03:5124530..5124667 (- strand)
Length: 138
Type: five_prime_UTR

>Vigan.03G054100.01 class=Sequence position=Chr03:5117880..5124667 (- strand)
TCTGTTTAAT CGTAAATTTT AACGAAGTTT TTTCAGTTAA ATTTGAACCT GAAACTTTGT TCTGTCTTCA TTTATTTTTA
ACAGCGCCAA AGTTGAAGAG TTTGAAGTAC AGAAAAGAAA GAAGGAAAGA AAAAAAAAAT GGAAAAACTC GCAAATTCGT
TTTCAGTGTT AGAACTCGAC GCCGGCGATA GTCACGTTCC CACCACCGCA GGTATTTCCT TTCTCTTTTC TCTCTTCCAT
TCAATTTTCA CTTTTTAGAT TATTATTATT ATTACTTTTT AATTTTGAAG CGTAGTTGAT GAATTTTGGG TTAGGGTTTC
ACATGTTCTT ATTGATCTGG GCATCTCGGA GAGTATCAGT GTTCTTTGAA AACTGTTTTT GCTGACGAAT TTATGGAAAT
TATTTTTGTT CAATTTTTGT GATGAAATGT TTTCCTTGCA TGTTGGCTGT TTAGTGCACT GTTTCAATGC CGGAGTAAGA
TTTGTTTCAT ATGAAGAGAA GTAACGAAGA ATCAGTTATG ATTTATAGTG TCTTCATTTC TTGACTAGAG AGCTGCTGCA
ACAACATTAA AACACATTAA ATATTTAAAA CATCGATTTC ATGCATTTGA AGCAATTGAA GATACATGCT TAACTGCAAA
AGACCAAAAA CAGTTGAATC TCACAAATCT TGGAGGATTA TGGAAATTAT GATTCCCAAT TTTCTTTCTT TTCCTGGTAG
TAGTTTCATA GTTCTTCCCG TTAGATTTTA TATGCATCAA TCCAAAATGT TTCTGGATCT TCAATCTAAA GAATAGACTC
CACACTATTG CATGAGGAAG AGGTTGTGGG TCTGGCTCCA TGAAAAAGAG CGTAGTCATG CTTTCTCGGT GCCAACCACA
ACTTCGAGCA CGAGTTTTTT TTTTTTAAAG TTGAGAAAAA ATATGTTTTT GGCCTCTCTA AACTATTTAA ACTTTAGTTT
CAGTCGTACC ATTTTTTGTC CAATTTTTGT GCCTTTAATT TGGAAATGTA CCACTTTTGG TCTTCCAAGT GCTTTAGATG
ACACTTTTTA GGGGAAATAA AGAAAATCGG TTTAGACAAT GCTCAAGGAC CAAGATTATA CATTTTGTCA ACCTCTCTTT
TATAGTGATG TTATTCATGT AGCTAACCTC TCTTAGTGGG ATAAGGTTGT TGTTGTTATT GTTTACTTTG GAGGTCAGAT
TGGTACTTTT ATTAGCTGAT ATATTACCTA ATGCTGATAT CTTCGCTAGT CATCTTGCTG CTGTCCATTT TTATTTTAAC
TTCTTGGTTA CATAAATTTC TTGGATGATG CTTTCTTGTG GAAACATTAT GTTAATTACT TTGTGAGTGA ACTTACAGCT
ATGTACTTTC ATGGTGCAGA TAACAGTGGC AAGGGAGTTA ATCCTGACAT TGGCGTTATA CCAGTAAAGA ACAAGAAACA
AGATCAAGAA AATGAAGTGT TTCCTTCATG TGAATACAAG TTACCTCTGG TGTGGATTGA CTTGGAAATG ACTGGTAAGC
TTGTAGAAAA ACAAGGAGGG TGTTTTACTT GTATGTGATT GCAATTGCAA AACTAATTTA AAAAAGTATT TTTCATTGTG
GTTTTTTTTT ATGTTTGATC CGTATTGTTT ACAAACCTCC AAATCTTTCA GCCACAAAGC TCTTACATTT TATATATGGT
ACCCATAATC TTAATAAATA CCTGTCATAG ATTAGTTAAG ATGCCTCCCT TCATGACTGT AAATCTGTAG TTGAATTTAA
GTAACTCAAC TCAAGTGAGC CTTTTTACTA GCAATTTGGA TAAGCTTTGT ATTCTGGAAA CATGTGCTCA GTGAAGGTGA
ATTTTTGTTC AGTATTCTAT CTTTCCTAGG ATTATTTTCT TTAAGAAACT GCTTTCCAGA GAGTAGTCCG TCTCTTTTTT
ATGCTTCTTA ATGAGCCTAT AGAGTGTGGA CAAACCTTAT AATATAGTTC AAGTTTGTCC ATGTAACATT TACTTTTGTT
GGATTTATTA ATTGGACTCC TTTTACCTTC TAGAAACAAA TGCTTTCTTG TTTGTACGAT TGTCAGCCTA AGATCTGAAC
GTTATTCGGA TTTCATCATT TTCACCCTCT TAATTTGTTT ATTATTATTT TTCACTGCTT GGTACCATTT CTCTGTGTTG
TAGATTTTGT CGGGTTGAAT GCATTTGTCT CTTACATTTG GTTATATATT AATTTGTGGT ATTTAAATCT GCTCACCGAG
TAGTCTCTAT ATTTTTTAGT CACCAACTGT GTAGTCTAAT TCTTGGATAA CATAAGAATT TTTTAGTGCC AGATGATTTT
TTTTTACTAT TTGTTTTATT TATCAATAAT TACAATAACA ACAATGTATA AACTGTTTGT GCAGGTTTAA ATATTGAAGT
GGACAGAATA CTGGAGATTG CTTGTATAAT TACAGATGGA TTTTTAACCA AAACAGTGGA GGTAATTAAT TCAATTTGCA
ATTTCCATGT TCGATTTTGT TTATTTTGTG GTTGTTTCCA TGCATCACTG TATTTTGAAT GAGTTTCTAC ATTCTCTACA
AAATAACATG TCTTTTTTAC TTTTTTTTCC CTCTCTGTTT ATCTGTAAGG AAAAACTTGC TTATTCCATA GACTGTCACA
TGTTTTCTAG GGAAATAATT AATTTTCTCT TGGAATGTTC TCCCAAGGAG TGGGTAATTA AAGGATGGTT CCTTCAAAAG
TGTTAATGGA GTTCATGCCA TTAAATAATC CTCAGCTTTC CTGTGCTTTC TTTTCATTGT TTTGGATATG CCCTTTGACT
CTATCAACTA TTTCATTGGG ACTTTGGTGG CTTTTCATTT TTTATGTAGA TGTGCAATTT TTAATTCAAT TTAAGTTTTA
ACTTATCCTC GTAGCTCCCG CCCTTTTCAC TTTCATTCAA AGGAGGAAAT GCTATTTGAT TTAACAGAGG AATTCCAAAT
CCACATTATG GAAGCATTTT CTTAAGTATC TCTGCCAAAT AAATTATTGG TCTTTCTCCT ACTCTTTTTT GGCAAAGGAT
GAAATGTTAT TGCATTTGGT GAAATGTTTT GCATGATCCC TTCAGTTTGT TTATGAAAGA AAGTATCTGC TATTTTTAGG
GTCCCGATTT GGTCATTCAT CAAACTAAGG AGTGCCTTGA CAGGATGGGA GAATGGTGTC AGAATCATCA TGCATCTAGT
GGTAAGTGGT GAATGCTATA TTTTGATACT TTTTATTCGT AGAAAAAAGT TATTGGAAAG ATGTCCTTCA AAACAGATAA
AATATTTCAA TATGTTATGT AATATGAAGG CATTTGAGAC TCTAATACTG TATATTCATG AGTTTCTGAT TGGTTGCTTT
TTCATAACTT TATTTAGTCC TTTCTCTATT TCTGTTAAAT TGGATTTTAA ATAGCAGACT AACCATTTTC AATGAATTTA
GGATTAACAA AAAAGGTGCA ACAGAGTACC ATTAGTGAAG GAGAAGCTGA AAAGCAGGTT TGTAGTAATT ATACTATGTG
GCAAGCTCTC TTTTTGTCGG AACTTACTTT CTATCAACTA TCATATTGAA TGGATACTGT ATTTTTATAC ATGTTCAATG
AAGTTGAAAT AATGTTATCC CTTTCTTATT GACAGATGAA ATAGTTAAAC TTGTCTATCA GGATTAGAGT GACAGAACAT
GACAACCCTC TTAAATATGA GTATAATATA CAGAATAAGA AACATTAAAA TGTGTAATAG TTAGGTGGAT CAGCTGTAAG
TAATTTGAGC TGAGACTATT AGTAGGGGAA GTTTGTAGTA GTTGGCAGGA AAATTGTATA ATTTTGTGTG GGAGGGTTCA
GGTTCCTCAA AATACTTGAG GCTAATTCAA TCGAGAACTG TTTCTGAGTG AGGAGTTCTT TAAGATCAAT AAAGATATTC
TTGTTTCTTT AAACATTGTT TCTGGATCCA AATCCAATCC CAGTTCTATC AGTCTTAATG TGCTAAAGGA AATTAAATTT
CTTATTATCC TTCCCAAATT TCATTAAAAA TATAGGCAGT CCATACGGGG AAATTTTTTG GCAGCTGTAA TTTTTTTTTC
CCTACCAGGA AACCTATTAT CTATTCTCTG ATAATTCTTG ATATTGGCAT GAATAGTTGA ATATATGCAT TCTAATTTTA
CTTTAAGCGG TCTATGATCT GGTCCTTGAG TAATTTATGA TTTATTCAAG TAGTTCTAAG GCTATACAGT AATCAGCAGA
GTGGCGCTGT TGCCATTCTT CTAGGTTGAT GATAAATATT GCACAAAATG GTTTCTTCTG TTGTGTTATC CATGCAGTGA
TGTATTTAAA TATTATAGGA CAAATTTAGG TTAGAGTTAT TAAGAGATAA TAATTCTTTC CTCTACAGAA TGGCCTATCC
TGTAGTTACC CTTTTAAGAG CCTTGGGAGA ACCACACCAC AAAATCTGGC TATAGTAGTT GAAAAACCCA ATGCCCTACA
AATCCGATAA TTACATTGTG GGATTCAAAT TCCATACCTT GCAATTGGGT CCTAGCAAAC CAAATGCCAC TAAGTATACT
AGAGACAAAA CCAGTTGGTA TTTGGCATCC TACTCCTGCA TCAAGGCAAT GATATCAGTT CCAGTTATAT GGGAGTATTC
ATGGCTCCCC CCATGTGATA TTTGCTTGTT GTGTTGGAAG TGTCTGTAAA CTCGTATCTT TTTTTGTGTA TTGCCACTTT
ATCTGTCTTT AGTTTTTGTG TATTCTTTGT TTTATTCATT TTTTTACGCT ATTATGACAG TTTGTAATAT CTTGCAAAAC
GGCAGGTTAT TGAATTTGTA AGGAGATATA TTAAAGTTGA TTCGTACACA CCTCTCTTGG CAGGAAATTC AATATATGTT
GATTTTCAAT TTCTGAAGGT ATTGGTTCTG CCATCATAGA AGCTGAAGTA TCATTAATTT CTTAATTCTA ATTGTCATGT
TTTTGTTTAA AAGATTATGA TGTATTCCGT ATGCTTTGGA TTTTTATTTT ATTTTTGTAA ATTTCTGGTG TAAATTATTA
GTCCTATCAC ACTGTCAAAT TTAATTTTTT TAAATAACAA AATATTACAA TGCCGAGGTA TATTGGGTAT TGTTTATATA
TCATGCTTGC CAAGTCATGG TTATTAATTA TGTTGATCAA AATCATCAAG CACTTCTGAA GCTTGCACAT CTGGTAAAGA
TCGATTTTAG ATGTCACCTG AAATTTGTCA TCTGAATATA TTATTGAAAG CATATAGTGC TGTTTTTATT TGGTATGTCT
ATATGTCCTA TTTTTCCTCT TTGAAATATT CCGTTAAACT GGATCAACTT TTGCAGAAAT ACATGCCAAA ATTGGCGAGT
CTATTCTCTC ATGTACTTGT TGATGTTAGT AGTGTTAAAG CTCTCTGCAT TCGCTGGTAT CCCAAAGGTG AGAAATGATA
CAATCAGTAT ATAATGAAAT TGTATTTGGT ATTAGTGCAT TATAAATCAT CCTGAAGTTT TTTTTGTATT TGTTTTTTCT
TGACCCCCGT CAAAATAAGG CATTGTTGGC CATTTTCAGT GCATATCACT GCATTACTGG ATCTGTTCCG CGAACATTAT
TCTTCTATTT TTTTTTTGGA TGCTATACAT GTAACGTTTG TTCCGTTTGT TTGAACTGGT AAGTAATATG ATAAAACGTC
CCATTTCCAT AAAAAAGATT ATGAATTAAA TATTACCCTT TTCAAACTAA AATATGAAGA ATTCCTTGTC TCTTGTCCCT
TTGTGTCAAC ATTCCAATTT GACTTCCTAG TATTGTTTTC TCTACATTTT ATGCAAGGAA TATTTTTTTG GGCAATTTTT
AATTGCAGAT GAATAAGAGA TTTTCACATT ATTACCATTC TGTGTATCTA TTGTGACCTT CCCCTCAACA CCCTGCGGGT
ATAAAAAAGT TGAAAATGTG GAAATCCGGA AAGCCACCAA CCGAAGGGAT ACTTTAAAAC CTGCTACTCC TCTCCCCAGA
AAAATTCAAC TAATGAACAA ATATAGATTC CATGCTGAGG GAAAATCCTT GAATTTAGAG ATATTATTAT GTAATAGCGT
AAAGGTGCTT AGAAACTTGG CAAGGTGCTT GTAGATATTT TTTTGTTGCT TTAACTTTGA AGTTTGGAAT CTCACCAGCC
ATCCCTTTTG CTTTTGGGTT TGATTTGGTC GTAGCTAGTT ACTTTGTTTT AGTTATGACT ATTCTTTGCC TCCAGTTGTG
ATCTTAAATG GTTTGCATGT TTCTCGGTTT TACAAATTCG ATAGATGGGG AACAATGGAA TACCTACCTT CTGGGATTTT
TGTTACTATT CGTGATTTTT TTATCATACT AATTATGCCA TTTCCTGTTT CCTAAGCGGA GTCGTGGAGT AATTATTATT
AATCAATGAG AGCTGAGAAA GAATCTTGAA CTCAAACTAT AAAAAGGTTT GTTATTTGTG CAGATCAGAA GAGAGCACCT
TCAAAAGAAA ACAGACACAG AGCCATGGAT GACATTAGAG AAAGCATTGA GGAACTTAGA TACTACAAGG CAAATATTTT
TAAGCCTAAG TCCAGAAAGT GATCGAGTTG CAGAGAACCA CCGTGTGAAT GGTTATGGGC TAGTTTCCAG TTCAAGTGTA
AATGGCTCGT GATTTTCGAT AGATTGTATT GCAAAATCAC ATTTAAATCT TCATCGGAAA CCCTGATGTT TCAACAACTC
TTTCAAAATG GAACTGTGAT TGCCTATTAC CATGTCCAAA GAAATGTAAA ATAAGTTTTA CGTTTTTA

>Vigan.03G054100.01
TCTGTTTAAT CGTAAATTTT AACGAAGTTT TTTCAGTTAA ATTTGAACCT GAAACTTTGT TCTGTCTTCA TTTATTTTTA
ACAGCGCCAA AGTTGAAGAG TTTGAAGTAC AGAAAAGAAA GAAGGAAAGA AAAAAAAAAT GGAAAAACTC GCAAATTCGT
TTTCAGTGTT AGAACTCGAC GCCGGCGATA GTCACGTTCC CACCACCGCA GATAACAGTG GCAAGGGAGT TAATCCTGAC
ATTGGCGTTA TACCAGTAAA GAACAAGAAA CAAGATCAAG AAAATGAAGT GTTTCCTTCA TGTGAATACA AGTTACCTCT
GGTGTGGATT GACTTGGAAA TGACTGGTTT AAATATTGAA GTGGACAGAA TACTGGAGAT TGCTTGTATA ATTACAGATG
GATTTTTAAC CAAAACAGTG GAGGGTCCCG ATTTGGTCAT TCATCAAACT AAGGAGTGCC TTGACAGGAT GGGAGAATGG
TGTCAGAATC ATCATGCATC TAGTGGATTA ACAAAAAAGG TGCAACAGAG TACCATTAGT GAAGGAGAAG CTGAAAAGCA
GGTTATTGAA TTTGTAAGGA GATATATTAA AGTTGATTCG TACACACCTC TCTTGGCAGG AAATTCAATA TATGTTGATT
TTCAATTTCT GAAGAAATAC ATGCCAAAAT TGGCGAGTCT ATTCTCTCAT GTACTTGTTG ATGTTAGTAG TGTTAAAGCT
CTCTGCATTC GCTGGTATCC CAAAGATCAG AAGAGAGCAC CTTCAAAAGA AAACAGACAC AGAGCCATGG ATGACATTAG
AGAAAGCATT GAGGAACTTA GATACTACAA GGCAAATATT TTTAAGCCTA AGTCCAGAAA GTGATCGAGT TGCAGAGAAC
CACCGTGTGA ATGGTTATGG GCTAGTTTCC AGTTCAAGTG TAAATGGCTC GTGATTTTCG ATAGATTGTA TTGCAAAATC
ACATTTAAAT CTTCATCGGA AACCCTGATG TTTCAACAAC TCTTTCAAAA TGGAACTGTG ATTGCCTATT ACCATGTCCA
AAGAAATGTA AAATAAGTTT TACGTTTTTA 

>Vigan.03G054100.01
ATGGAAAAAC TCGCAAATTC GTTTTCAGTG TTAGAACTCG ACGCCGGCGA TAGTCACGTT CCCACCACCG CAGATAACAG
TGGCAAGGGA GTTAATCCTG ACATTGGCGT TATACCAGTA AAGAACAAGA AACAAGATCA AGAAAATGAA GTGTTTCCTT
CATGTGAATA CAAGTTACCT CTGGTGTGGA TTGACTTGGA AATGACTGGT TTAAATATTG AAGTGGACAG AATACTGGAG
ATTGCTTGTA TAATTACAGA TGGATTTTTA ACCAAAACAG TGGAGGGTCC CGATTTGGTC ATTCATCAAA CTAAGGAGTG
CCTTGACAGG ATGGGAGAAT GGTGTCAGAA TCATCATGCA TCTAGTGGAT TAACAAAAAA GGTGCAACAG AGTACCATTA
GTGAAGGAGA AGCTGAAAAG CAGGTTATTG AATTTGTAAG GAGATATATT AAAGTTGATT CGTACACACC TCTCTTGGCA
GGAAATTCAA TATATGTTGA TTTTCAATTT CTGAAGAAAT ACATGCCAAA ATTGGCGAGT CTATTCTCTC ATGTACTTGT
TGATGTTAGT AGTGTTAAAG CTCTCTGCAT TCGCTGGTAT CCCAAAGATC AGAAGAGAGC ACCTTCAAAA GAAAACAGAC
ACAGAGCCAT GGATGACATT AGAGAAAGCA TTGAGGAACT TAGATACTAC AAGGCAAATA TTTTTAAGCC TAAGTCCAGA
AAGTGA

>Vigan.03G054100.01
MEKLANSFSV LELDAGDSHV PTTADNSGKG VNPDIGVIPV KNKKQDQENE VFPSCEYKLP LVWIDLEMTG LNIEVDRILE
IACIITDGFL TKTVEGPDLV IHQTKECLDR MGEWCQNHHA SSGLTKKVQQ STISEGEAEK QVIEFVRRYI KVDSYTPLLA
GNSIYVDFQF LKKYMPKLAS LFSHVLVDVS SVKALCIRWY PKDQKRAPSK ENRHRAMDDI RESIEELRYY KANIFKPKSR
K*