GBrowse Details

Vigan.03G050600.01

Basic Information:
Name: Vigan.03G050600.01
Multiple alignment
Variant Information
Position: Chr03:4770218..4772693 (+ strand)
Length: 2476
Functional Information:
Description: Similar to Late embryogenesis abundant protein, group 2 isoform 1. [XP_007026469.1, Theobroma cacao]
GO: Biological Process: response to desiccation (GO:0009269)
InterPro: Late embryogenesis abundant protein, LEA-14 (IPR004864)
Immunoglobulin-like fold (IPR013783)
Water stress and hypersensitive response domain (IPR013990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.55,2.10,73.44,36.55,64.02,88.42,83 .26,80.57
Arabidopsis thaliana homolog: AT2G44060.1
Automatic updates:
Name: NM_001255774 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100800203 (LOC100800203), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255774 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative late embryogenesis abundant protein (LOC100800203), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:4770218..4770436 (+ strand)
Length: 219
Type: five_prime_UTR
Position: Chr03:4770953..4770954 (+ strand)
Length: 2
Type: five_prime_UTR
Position: Chr03:4770955..4771914 (+ strand)
Length: 960
Type: CDS
Position: Chr03:4772304..4772309 (+ strand)
Length: 6
Type: CDS
Position: Chr03:4772310..4772693 (+ strand)
Length: 384
Type: three_prime_UTR

>Vigan.03G050600.01 class=Sequence position=Chr03:4770218..4772693 (+ strand)
AACTTCAATC AACGGCTACC ATTCGTCTTG TCTTCGTGCC TAATATCTGA CCCTTCATTA TCTCATCTAA TTGTTTTTTA
CTTTCTTTTT TGTATTTTTT TCCACCTACA AAATCTTGAT CTCTATGCTG TTGTGTGTTG TTGTTGTGTT GTGTTAATCT
GATTCACACT TACATACTCT CTCTCTCTCT TGGATCACTC ATCTCATTTC AATTCTCAGG TACTTTCTCT GCACTCTTTC
ACATATTTCT TCTTCATTCC CACCCAGTAT ATTCCATTTT TATGATCCCC TTTAAGGCCA ATTTGGCCAT GCTTCCTCAT
TTTGTGAGGA TGGTATCCTG TATTCAATTC AAATGATCAA GCATTGACCG TCTTATGATT CTGTGCATCT TCTATTTTTG
ATTCCTGGGA AATCTACTGG CAAAAAGTAA TTACTTAACA AAATGCAAAT AAAGTTGAAT TTTTTTTCCT AGTATCATGA
CCCTGATATG GAATGACAAG TTTGGTTGAA TTTTTGGAGC ATGGAGATCT AAAGTTTGTA TTTTTGATTC GTGTGTTTGT
TGTAACTATC AAATGCTGAT GTAAGTGATC CAGCATGTTG CAGTGTTTTC CTTTGCAAAT AATTGATCAG AGAGTTAACT
TGTGACTTTG GTTGACTTTG ATTAGTGCTG TGATTGGGTT GAAATTGGAT CTTGATGAAG CTAACTTATG TGAAAATTTG
GCATCTGTAA TTTAGATATG TCGACATCTG ATGAGCCAGA GGTGGTGGAA AGGGGTACCA AGGATGAAAA GCACAAGGAA
GATGACAAAG AGGAAGGGAA GGGTGGATTC ATTGACAAGG TGAAGGATTT CATTCACGAC ATTGGTGAGA AGATTGAGGA
AGCTATTGGG TTTGGGAAGC CTTCTGCTGA TGTTACTGCG ATTCACATTC CATCAATTAA TCTTCACAAG GCAGATCTTG
TTGTTGATGT GCTCATAAAG AACCCTAATC CAGTGCCAAT CCCTCTGATT GACATAGATT ACTTGGTTGA GAGTGATGGA
AGGAAGCTAG TTTCTGGATT GATACCAGAT GCAGGTACCA TCCATGCACA CGGAGAGGAG ACTGTGAAAA TTCCTCTTAC
TTTGATTTAT GATGACATCA AGCAAACATA TGCTGATATT AAACCAGGAA GCATCATTCC TTATAGGGTG AAGGTGAGTC
TGATTTTTGA TGTTCCCATC TTGGGAAGGC TAACTCTACC TTTGGAGAAA ACTGGAGAAA TCCCCATACC TTATAAGCCT
GATGTTGATC TTGAGAAGAT TCATTTTGAA AGGTTCTCTT TTGAAGAGAC AATTGCAACT CTTCATTTGA AGTTGGAAAA
CAAGAATGAT TTTGACCTTG GCCTGAATGC TCTTGATTAT GAGGTGTGGC TTGGTGATGT TAGCATTGGT GGTGCTGAAC
TCACCAAGTC TGCTAAAATT GAGAAAAGTG GGATTACCTA TATTGATATA CCAATTACCT TCAGGCCTAA GGATTTTGGC
TCTGCCCTCT GGGATATGAT TAGAGGAAAG GGAACTGGTT ACACCATGAA AGGAAATATT GATGTTGACA CTCCCTTTGG
AGCAATGAAA TTGCCCATCA GCAAAGAGGG TGGTACAACC AAACTTAAGA AAAAGAAGGA AGATCGTGAT TACGACGATG
ATGATGATGA CGATGAGGTT TATTAATAAA ACTCCTTTTA ATTATGTTTC TTGATTCCTT TCAATGTTTT CAACATTCTC
TAGAAAATGA CAAGGTATTG GCTTGCAACT GCACATATCA TCAGACGGGA GATAGCTCTG AATTCACATA TGTAGCCCTT
GTCTTGCATA TTTTCAATAT AATTGAAATG CTTCAGAATC TAGTATTGGA AAAAAAAACA TTTCCTGTGC TTGGCTGGAA
ATCTGATAAA TAGATTTGGT GAACAATTTT TTGTCTTTTA CTTATATGAG AAATTCTTAT CTGAAATAAG GTTGCTTCCC
AACAGTAACT CTTGGTAATG TCTTTATCTT GTATAAGTTT TATTTGCTTG TTTCATAACT TGTGTCTATA ATCTTTTTCT
TTGCAGGATT GAAGAAGAAT TGTAGCAGGT TATTTACAAG TTATTAATAA AAGAGGACTT GAACTTCGAG GCATTACTTT
ATGAGTTCTG ATGGCATTGA TATGTATTTT TAGAGATGAA TTCAAATTGA GATAGTATCA GAATTTTAGT GAAAATATGC
TTCAGTTTGG CTTGTTTTCT TTGTTTGAAT CATGCTTTTG TTGTACTTAA TTGATTATCT TGAGAATCTA ATGTTATCCT
AATGTGAGAT AAAAGATAAT ATGCCTTGAA AATAGTATGT GGTCGGTTTT ATCTATTCAT CTATCTGTTT GTGAGGTGGA
GTTTTCTTTG TCATTCTGGA ACTGCGAATT GGTCATCAAA CAGTTTATTG TATTATTAGT TTGAATCAAA GGGTGC

>Vigan.03G050600.01
AACTTCAATC AACGGCTACC ATTCGTCTTG TCTTCGTGCC TAATATCTGA CCCTTCATTA TCTCATCTAA TTGTTTTTTA
CTTTCTTTTT TGTATTTTTT TCCACCTACA AAATCTTGAT CTCTATGCTG TTGTGTGTTG TTGTTGTGTT GTGTTAATCT
GATTCACACT TACATACTCT CTCTCTCTCT TGGATCACTC ATCTCATTTC AATTCTCAGA TATGTCGACA TCTGATGAGC
CAGAGGTGGT GGAAAGGGGT ACCAAGGATG AAAAGCACAA GGAAGATGAC AAAGAGGAAG GGAAGGGTGG ATTCATTGAC
AAGGTGAAGG ATTTCATTCA CGACATTGGT GAGAAGATTG AGGAAGCTAT TGGGTTTGGG AAGCCTTCTG CTGATGTTAC
TGCGATTCAC ATTCCATCAA TTAATCTTCA CAAGGCAGAT CTTGTTGTTG ATGTGCTCAT AAAGAACCCT AATCCAGTGC
CAATCCCTCT GATTGACATA GATTACTTGG TTGAGAGTGA TGGAAGGAAG CTAGTTTCTG GATTGATACC AGATGCAGGT
ACCATCCATG CACACGGAGA GGAGACTGTG AAAATTCCTC TTACTTTGAT TTATGATGAC ATCAAGCAAA CATATGCTGA
TATTAAACCA GGAAGCATCA TTCCTTATAG GGTGAAGGTG AGTCTGATTT TTGATGTTCC CATCTTGGGA AGGCTAACTC
TACCTTTGGA GAAAACTGGA GAAATCCCCA TACCTTATAA GCCTGATGTT GATCTTGAGA AGATTCATTT TGAAAGGTTC
TCTTTTGAAG AGACAATTGC AACTCTTCAT TTGAAGTTGG AAAACAAGAA TGATTTTGAC CTTGGCCTGA ATGCTCTTGA
TTATGAGGTG TGGCTTGGTG ATGTTAGCAT TGGTGGTGCT GAACTCACCA AGTCTGCTAA AATTGAGAAA AGTGGGATTA
CCTATATTGA TATACCAATT ACCTTCAGGC CTAAGGATTT TGGCTCTGCC CTCTGGGATA TGATTAGAGG AAAGGGAACT
GGTTACACCA TGAAAGGAAA TATTGATGTT GACACTCCCT TTGGAGCAAT GAAATTGCCC ATCAGCAAAG AGGGTGGTAC
AACCAAACTT AAGAAAAAGA AGGAAGATCG TGATTACGAC GATGATGATG ATGACGATGA GGATTGAAGA AGAATTGTAG
CAGGTTATTT ACAAGTTATT AATAAAAGAG GACTTGAACT TCGAGGCATT ACTTTATGAG TTCTGATGGC ATTGATATGT
ATTTTTAGAG ATGAATTCAA ATTGAGATAG TATCAGAATT TTAGTGAAAA TATGCTTCAG TTTGGCTTGT TTTCTTTGTT
TGAATCATGC TTTTGTTGTA CTTAATTGAT TATCTTGAGA ATCTAATGTT ATCCTAATGT GAGATAAAAG ATAATATGCC
TTGAAAATAG TATGTGGTCG GTTTTATCTA TTCATCTATC TGTTTGTGAG GTGGAGTTTT CTTTGTCATT CTGGAACTGC
GAATTGGTCA TCAAACAGTT TATTGTATTA TTAGTTTGAA TCAAAGGGTG C

>Vigan.03G050600.01
ATGTCGACAT CTGATGAGCC AGAGGTGGTG GAAAGGGGTA CCAAGGATGA AAAGCACAAG GAAGATGACA AAGAGGAAGG
GAAGGGTGGA TTCATTGACA AGGTGAAGGA TTTCATTCAC GACATTGGTG AGAAGATTGA GGAAGCTATT GGGTTTGGGA
AGCCTTCTGC TGATGTTACT GCGATTCACA TTCCATCAAT TAATCTTCAC AAGGCAGATC TTGTTGTTGA TGTGCTCATA
AAGAACCCTA ATCCAGTGCC AATCCCTCTG ATTGACATAG ATTACTTGGT TGAGAGTGAT GGAAGGAAGC TAGTTTCTGG
ATTGATACCA GATGCAGGTA CCATCCATGC ACACGGAGAG GAGACTGTGA AAATTCCTCT TACTTTGATT TATGATGACA
TCAAGCAAAC ATATGCTGAT ATTAAACCAG GAAGCATCAT TCCTTATAGG GTGAAGGTGA GTCTGATTTT TGATGTTCCC
ATCTTGGGAA GGCTAACTCT ACCTTTGGAG AAAACTGGAG AAATCCCCAT ACCTTATAAG CCTGATGTTG ATCTTGAGAA
GATTCATTTT GAAAGGTTCT CTTTTGAAGA GACAATTGCA ACTCTTCATT TGAAGTTGGA AAACAAGAAT GATTTTGACC
TTGGCCTGAA TGCTCTTGAT TATGAGGTGT GGCTTGGTGA TGTTAGCATT GGTGGTGCTG AACTCACCAA GTCTGCTAAA
ATTGAGAAAA GTGGGATTAC CTATATTGAT ATACCAATTA CCTTCAGGCC TAAGGATTTT GGCTCTGCCC TCTGGGATAT
GATTAGAGGA AAGGGAACTG GTTACACCAT GAAAGGAAAT ATTGATGTTG ACACTCCCTT TGGAGCAATG AAATTGCCCA
TCAGCAAAGA GGGTGGTACA ACCAAACTTA AGAAAAAGAA GGAAGATCGT GATTACGACG ATGATGATGA TGACGATGAG
GATTGA

>Vigan.03G050600.01
MSTSDEPEVV ERGTKDEKHK EDDKEEGKGG FIDKVKDFIH DIGEKIEEAI GFGKPSADVT AIHIPSINLH KADLVVDVLI
KNPNPVPIPL IDIDYLVESD GRKLVSGLIP DAGTIHAHGE ETVKIPLTLI YDDIKQTYAD IKPGSIIPYR VKVSLIFDVP
ILGRLTLPLE KTGEIPIPYK PDVDLEKIHF ERFSFEETIA TLHLKLENKN DFDLGLNALD YEVWLGDVSI GGAELTKSAK
IEKSGITYID IPITFRPKDF GSALWDMIRG KGTGYTMKGN IDVDTPFGAM KLPISKEGGT TKLKKKKEDR DYDDDDDDDE
D*