GBrowse Details

Vigan.03G048400.01

Basic Information:
Name: Vigan.03G048400.01
Multiple alignment
Variant Information
Position: Chr03:4606852..4610464 (+ strand)
Length: 3613
Functional Information:
Description: Similar to uncharacterized protein. [C6TDB5, Glycine max]
GO: Molecular Function: isomerase activity (GO:0016853)
InterPro: Peptidyl-prolyl cis-trans isomerase, PpiC-type (IPR000297)
Rhodanese-like domain (IPR001763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.40,30.56,10.56,25.49,11.89,16.73,5.64,6.58
Arabidopsis thaliana homolog: AT5G19370.1
Automatic updates:
Name: NM_001253112 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100803404 (LOC100803404), mRNA; nuclear gene for chloroplast product.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Name: NM_001289321 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max rhodanese-like/PpiC domain-containing protein 12-like (LOC100779438), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:4606852..4606944 (+ strand)
Length: 93
Type: five_prime_UTR
Position: Chr03:4606945..4607140 (+ strand)
Length: 196
Type: CDS
Position: Chr03:4607330..4607455 (+ strand)
Length: 126
Type: CDS
Position: Chr03:4607572..4607663 (+ strand)
Length: 92
Type: CDS
Position: Chr03:4607978..4608078 (+ strand)
Length: 101
Type: CDS
Position: Chr03:4608283..4608393 (+ strand)
Length: 111
Type: CDS
Position: Chr03:4608741..4608849 (+ strand)
Length: 109
Type: CDS
Position: Chr03:4609314..4609364 (+ strand)
Length: 51
Type: CDS
Position: Chr03:4610150..4610230 (+ strand)
Length: 81
Type: CDS
Position: Chr03:4610231..4610464 (+ strand)
Length: 234
Type: three_prime_UTR

>Vigan.03G048400.01 class=Sequence position=Chr03:4606852..4610464 (+ strand)
TTTTGATAAA TTAGATGGTG TTCATAGGAA GGTGAGTGTA GGTGAAGTGT AACATGTGAA GTGAGTCTTG CAAAGGAAAT
ATCAATAGCT ATAATGTCAA TTTTGAGAGG AATTTGTGTG CTGAGAGTGG GAGTGGCAAC TCCAAAACCT TACCTTCTTC
CCTCTATCTT TTCATCATCC TTCAACATTC GTACCCTCTC ACACACCACT TTTTCCAGAA CCTTTCGTTT CCTCCCACCT
TCAATTCCTC TTTCATCCTT TGTGCCTCTC ATACCTCCCA AAGCAGCAGG TACTCATTTT CTGAAAACCC CATTATATTT
TTCCCCTTAA TTTGGTTTCT GATAGCATTT GGTAACGTGT CAATGTTTTC TTCTTATGTG GTGAAAAAGT TTTCATGAAA
AAAATATAAT TTTTCATGCA AAAATATAAT TTTTCATGAT AAAATCTGTT TTTTCATGAA AAAAATCTGA TTTTTCAGCC
TCTTATGGCA CTGGGAGTGG TGGTGCTGAA GATGGTAGGC CAAGGGAACT ATTGGTGCAG CATTTGTTGG TCAAAGAAGA
TGACCAGAAG CTTCTGTTGG ATCTTCTGCA AAAAATCTCT TCAGGTTAGT GACACTGAGG AATTCGGTTA TTTTCTGCTA
CCAATGTTAG GTTTTGGAAG GTGTTTGTTT CCAGTTTAAC CGTCTACGGC TTGTTTTTTA TGTGTTGTTT GTGTGTTCAG
GTGAAGATTT GAGTGATCTT GCTGTGGAAC ATTCAGTTTG CCCATCCAAA GAAGAAGGAG GAATGCTTGG ATGGGTCAAA
AAGGGTCAAA TGGTATACTT TTGAGATTAG ATTAAACCTT ATTTTTGTGG TTTCCCTGAA TTTGCAACCT TTTTGTGCTC
TGTTGGGAGG CGGTTTCTAT TGATTTCTTC GCTGCCATGT GTACTTTTAA AGGATAGGAT ACAGATATAA TTACTATAAA
CTTTCTCTGG GTAGGTGATA AAGGGGGTGA ATTAAGTATT TGGCTATATG GTTCTGGAAA GGAAGCAGAT GGGATAGTGA
TCTGGTTATG TTTTTTTCCA CTAATTTTAC TTAAACTGTA CAATTGTGTG ATTTCAATTT GGTGTCTGAT GGTGAAAATT
TGATAGGTTC CTGAATTTGA GGAGGCTGCG TTCAGTGCAC CTTTAAACAA AGTTGTAAAG TGCAAAACCA AATTCGGATG
GCACCTGCTG CAGGTTTTAT CTGAAAGGTA TTTACAGGCT TATGCTTCTA AATTGGATGA TTAGATGTTT TTAATTTCTA
TGAATTTTCT TAAGGATTTG GATTTTGATA GAGCTCACTA GCGATGTCTG ATGCAATTAG TCAGCACCAC TCACTGGAGT
AATCCTTGGA GGGTGTTGTT ATTAGTTACA ACGAATGTTT TCATGTCTTG TAAATTTTTT CTAACTGACA GGGAAGAATC
AATTCTTCAA GACATTCAAC CTCATGAGCT GCATGGGAAA ATTCAAGATC CCAATTTTTT GGAGGAGGCA CAGCTAATTG
ACGTTCGAGA GCCTGAAGAA GTGTATGCTT TGATTTTGTT CATTTTCAAT TAAAATTGAG GCCTAGTGGG TGTTTATAAA
TTAACATGGC AATTAGCTTG AAAAGGGAGA AACTATAGTG ATATATAACT CCAATTGAAA GTTTTGATAG CATTTCAACA
TTGGTACTCT TTTTGACATC TCAAATAATG AAACAAGGAG GTCTGCACTT TTTTTACTTC ATGGATATTA TTTACTGGCC
CTTACACTTG TGTGCATTTC TTTTTCCTTT GTTCTGTAGT TTCTGGAATC ATCTACCTTT CTTGCTTGTG TTTACTCTAG
TTGCTGGTTT AGTTTATCTA AATTTAAATG ACATTCTCAT CATGCACAGG GCTAAAGCAT CTTTGCCAGG ATTTACTGTT
CTTCCCCTCC GACAATTTGG AAGCTGGGGG CCTGAAATAA CTAAAAAACT TGACCCTGAA AAGGATATAT ACGTTATGGT
AAGTGCAGAT TTTCTTCCAA AAGATTAGAT GGTATCCATA AAACTAGACC TTTAATCCTA GTTATTACTT TTTTTTTACA
TGGCTTGATT GTTGTTCTTT TCTGAAAGAT CGGTTCATGT TGTGTCTGCT CCTGTTCCTC CTTAATTTGT TTGGAGGTTG
TGAGTTGATA CAAAAATTGA AACTGGAATT CTTTGAATAG GTTCCTGCTT TTGTTGCAGT CTAAGTTTGA TTTTGAGGCC
TTTCATTGGA GATATTTAAG AAAACACTAA GTTTGAATTC ATTCATCTTT CTTTCAGACT TTTGTAGTTT ACTTTTAAGT
ATTGTAGTTT GATTGACTGT TTGTTCAGGT AACTTGTTGT TACAATGCAC AAGTGGATTA ACTTTGAATC TGATTTAGCA
TTGTTTATTT TTATTTTTTT TGTGTTGATT ATGTTCAATA ACTTGTGTTC TTCTGAGCGC AGTGTCATCA TGGCATGCGG
TCATTACAGG TTGCCAAATG GTTGCTGTCA CAGGTAAAAT ATGTTTATTT TTCATGCTTG TATGTTTGGT TTTGCTTCAT
CATCTGTTTA TTTGTTGATA TCACAGTGTA ACTCCCAATC CATGCACAAA ATTAGTTCTA TAGTGTATGA GTTATAGACA
TGCAACCTGC ATCTGGTGCC TGCTAGATAG AGATTGCTTA GACTGTATAC AATTGATGCA ATAAAAAATT TCAACTTGAT
CATAGGTGAA GGAAATGAGA TGCTAGTTTG TGTACCTTTT ACTCACCTAT ATTCGAACCT GAAAGTAGAT TTAACACATT
TTGGAGCTAA TTCTCATCTT CACAAGTTGC AATGAAGTTA TTGTTTTATA CACTTTTTTC TGTTACACTC ATTTAGACTC
ACCGTACCAT TGGATGAAAT TCACTAACTA CACTTTTTTT CTGATACACT TATTGGAGGG AAATTCACCA AAAGTTACTA
AATTTTGAGT CTGACTCATG ATTTTGTAAT TTTTAATAAA TTTAACCAAC AATAAACAGT GTGTTAAGAA GTGGACTTTA
AATCTATCTC AACTCTACAA AACAACCAGT TTGTAAGGTG AAATTTGCAT ATATTTATAT ATATTATAAA TCAATCTTAT
TCCAGTCGAT GTGAGACTTC TAACACAGTC TGTTATGAGT GCATCAAATG TTGTGAGCAA GGTGTTAACA TTGTATGATA
ATGATTTTTA AGATGTCACT CATTGTGATT TCTAATTTTT TTCATTTAAT GTAAAAATAA GAAAAATATG AAGGGATTGT
TGATTGTGAA CTTTTCAGGG CTTCAGGAAA GTATACAATG TTTCTGGGGG AATCCATGCC TATGCTGTTC AGGTTGATCC
ATCAGTACCC ACATACTGAT CACATTACCT TTAGGAATTG GAACTCTCTC TTATTATGGA CATGTATTCA TTTTCAATTT
TCAAGGTTAC ATATTCTTAG AATAGTTTAT GTTATTTGAA TAATCATTTC AATACTCTAT GGCTCTCTGT TCCTGACAGA
AAATGGATTC ATACAACTCC TTTCTGATCT GAAAATATAG TTTTTCTGAC CAAATTTTCA AAGAGCCAAA AAATGGTTGA
TAAAAACCTT TTT

>Vigan.03G048400.01
TTTTGATAAA TTAGATGGTG TTCATAGGAA GGTGAGTGTA GGTGAAGTGT AACATGTGAA GTGAGTCTTG CAAAGGAAAT
ATCAATAGCT ATAATGTCAA TTTTGAGAGG AATTTGTGTG CTGAGAGTGG GAGTGGCAAC TCCAAAACCT TACCTTCTTC
CCTCTATCTT TTCATCATCC TTCAACATTC GTACCCTCTC ACACACCACT TTTTCCAGAA CCTTTCGTTT CCTCCCACCT
TCAATTCCTC TTTCATCCTT TGTGCCTCTC ATACCTCCCA AAGCAGCAGC CTCTTATGGC ACTGGGAGTG GTGGTGCTGA
AGATGGTAGG CCAAGGGAAC TATTGGTGCA GCATTTGTTG GTCAAAGAAG ATGACCAGAA GCTTCTGTTG GATCTTCTGC
AAAAAATCTC TTCAGGTGAA GATTTGAGTG ATCTTGCTGT GGAACATTCA GTTTGCCCAT CCAAAGAAGA AGGAGGAATG
CTTGGATGGG TCAAAAAGGG TCAAATGGTT CCTGAATTTG AGGAGGCTGC GTTCAGTGCA CCTTTAAACA AAGTTGTAAA
GTGCAAAACC AAATTCGGAT GGCACCTGCT GCAGGTTTTA TCTGAAAGGG AAGAATCAAT TCTTCAAGAC ATTCAACCTC
ATGAGCTGCA TGGGAAAATT CAAGATCCCA ATTTTTTGGA GGAGGCACAG CTAATTGACG TTCGAGAGCC TGAAGAAGTG
GCTAAAGCAT CTTTGCCAGG ATTTACTGTT CTTCCCCTCC GACAATTTGG AAGCTGGGGG CCTGAAATAA CTAAAAAACT
TGACCCTGAA AAGGATATAT ACGTTATGTG TCATCATGGC ATGCGGTCAT TACAGGTTGC CAAATGGTTG CTGTCACAGG
GCTTCAGGAA AGTATACAAT GTTTCTGGGG GAATCCATGC CTATGCTGTT CAGGTTGATC CATCAGTACC CACATACTGA
TCACATTACC TTTAGGAATT GGAACTCTCT CTTATTATGG ACATGTATTC ATTTTCAATT TTCAAGGTTA CATATTCTTA
GAATAGTTTA TGTTATTTGA ATAATCATTT CAATACTCTA TGGCTCTCTG TTCCTGACAG AAAATGGATT CATACAACTC
CTTTCTGATC TGAAAATATA GTTTTTCTGA CCAAATTTTC AAAGAGCCAA AAAATGGTTG ATAAAAACCT TTTT

>Vigan.03G048400.01
ATGTCAATTT TGAGAGGAAT TTGTGTGCTG AGAGTGGGAG TGGCAACTCC AAAACCTTAC CTTCTTCCCT CTATCTTTTC
ATCATCCTTC AACATTCGTA CCCTCTCACA CACCACTTTT TCCAGAACCT TTCGTTTCCT CCCACCTTCA ATTCCTCTTT
CATCCTTTGT GCCTCTCATA CCTCCCAAAG CAGCAGCCTC TTATGGCACT GGGAGTGGTG GTGCTGAAGA TGGTAGGCCA
AGGGAACTAT TGGTGCAGCA TTTGTTGGTC AAAGAAGATG ACCAGAAGCT TCTGTTGGAT CTTCTGCAAA AAATCTCTTC
AGGTGAAGAT TTGAGTGATC TTGCTGTGGA ACATTCAGTT TGCCCATCCA AAGAAGAAGG AGGAATGCTT GGATGGGTCA
AAAAGGGTCA AATGGTTCCT GAATTTGAGG AGGCTGCGTT CAGTGCACCT TTAAACAAAG TTGTAAAGTG CAAAACCAAA
TTCGGATGGC ACCTGCTGCA GGTTTTATCT GAAAGGGAAG AATCAATTCT TCAAGACATT CAACCTCATG AGCTGCATGG
GAAAATTCAA GATCCCAATT TTTTGGAGGA GGCACAGCTA ATTGACGTTC GAGAGCCTGA AGAAGTGGCT AAAGCATCTT
TGCCAGGATT TACTGTTCTT CCCCTCCGAC AATTTGGAAG CTGGGGGCCT GAAATAACTA AAAAACTTGA CCCTGAAAAG
GATATATACG TTATGTGTCA TCATGGCATG CGGTCATTAC AGGTTGCCAA ATGGTTGCTG TCACAGGGCT TCAGGAAAGT
ATACAATGTT TCTGGGGGAA TCCATGCCTA TGCTGTTCAG GTTGATCCAT CAGTACCCAC ATACTGA

>Vigan.03G048400.01
MSILRGICVL RVGVATPKPY LLPSIFSSSF NIRTLSHTTF SRTFRFLPPS IPLSSFVPLI PPKAAASYGT GSGGAEDGRP
RELLVQHLLV KEDDQKLLLD LLQKISSGED LSDLAVEHSV CPSKEEGGML GWVKKGQMVP EFEEAAFSAP LNKVVKCKTK
FGWHLLQVLS EREESILQDI QPHELHGKIQ DPNFLEEAQL IDVREPEEVA KASLPGFTVL PLRQFGSWGP EITKKLDPEK
DIYVMCHHGM RSLQVAKWLL SQGFRKVYNV SGGIHAYAVQ VDPSVPTY*