GBrowse Details

Vigan.03G008400.01

Basic Information:
Name: Vigan.03G008400.01
Multiple alignment
Variant Information
Position: Chr03:624006..626685 (- strand)
Length: 2680
Functional Information:
Description: Similar to Uncharacterized protein. [I1M672, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: integral to membrane (GO:0016021)
InterPro: GOLD (IPR009038)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:39.97,26.74,95.81,51.06,121.74,228.1 4,131.91,68.80
Arabidopsis thaliana homolog: AT3G07680.1
Automatic updates:
Name: NM_001248863 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527418 (LOC100527418), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248863 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max emp24/gp25L/p24 domain-containing protein (LOC100527418), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:624006..624170 (- strand)
Length: 165
Type: three_prime_UTR
Position: Chr03:624171..624304 (- strand)
Length: 134
Type: CDS
Position: Chr03:624873..624980 (- strand)
Length: 108
Type: CDS
Position: Chr03:625105..625291 (- strand)
Length: 187
Type: CDS
Position: Chr03:626411..626623 (- strand)
Length: 213
Type: CDS
Position: Chr03:626624..626685 (- strand)
Length: 62
Type: five_prime_UTR

>Vigan.03G008400.01 class=Sequence position=Chr03:624006..626685 (- strand)
GTTTTGATTC TGTGGATCCG TGATTTTGAG ATGAGTATCT GAATTAACCT ATTGTTTGGC AGATGAGATT ACCATCGTTG
AGGCATGCTT TGGTGTTCGT GTTAATTGGG GCATTGTGGA ACTTGCAGAG GTCGGAGGGT ATTCGATTTG TGATAGACAG
GGACGAGTGT TTCTCCCATG ATGTCAAGTA CGAGGGTGAC ACTGTTCATG TCTCTTTCGT TGTTATCAAG GCTGATTCTC
CCTGGCATTA TGGCGACGAA GGTGTCGATC TCGTGGTATG TTATTTTTTT CTTTTTTCCT CTCGCTCGAT CTCCTTATGT
GAAACCAATA TTATTTTGTT TTACCTTAAT TTTGTGTTTC GTAACTCTTA ATGAGAATTT ATGGGAATTT GTTTCAAAAT
TCCGATGAGG CAAGGGAATA GAATAGAACC ATAGGCGCCT ATACAAAGTC AAAACCAACA ATCATTGGTT TCTCTTACGC
GTACCTGCTG TTGGCTGTTG GCCGTTGGTT TAGGGTTTTA TCTTGGAACA ACCATCAATC TCATCCTTGA AATATTACCC
TCTCTGCTAA ATGATCCCCA AATGCAAAAA AATAAATTCC ATCTACGTTA TTTCCCAAGT GTTAGTTTAC CCAAATAATA
AAAAGTCCTT CAAATTGGTC TCTGAAATTC ACAAAATTCA TCCAATTAGA GATTAAATAT GTTTAAGAGA GGGATTACTT
ATGCATTATA GTTTTATATT TTCCGAGAAT ACTCTCTTAA AAGAGGGAGT AATACTTGAG AGACGAAATT GATGGTTTAT
TCATTTGTGT TGTCAAGCTA AATATATTTT GTACCTCTCT CTGTTCATAC CTAAGGTGGC AGAAGAATAT TCTGTGATTG
TCTTCAGCAC AACCATGATG CTTTTTTTGT TTTAAGATCT TAGGATCTGT TGGTAAACAT GAACCCCATT CTGGGAACTT
TTATTCAGTG CCCATGCTGA AGTATTTGGA GGGTGTTATA GCAAAAGTTT GTACATGGTA AACACCTAAT GGAGCAAAAT
GTTATCCACG GTTAGGATAT AATTTAGTTG CAAAAGGGTT AAATTTTTTT CATAGTAACA AAGAGTACTT GTAGTCATAT
AGAGATGTTG TGAATTTTAT GTAGCTATTT ATATGTATCA CCTTTTACAT TTACAATTAT GTATAAACGA TCCACATTAA
ACGTCTACTT TTGTTTTTTT GTGCTATACA ATCTTTGGAT ATTTATTTCT CTAGCAGTTG TACTAGTCCA CATTCTGCAT
ACACAATTGA TAGGAATAGC CTTTCTTTGA AACTATGTTC ACTTTCCTTT TTCTTGGTGT ACTCTACACG ATCATGTTTT
GGAATCTCAT TGCACCACAA TGTAAGAATT TCAGGTAAAG GGTCCCTCTG GTGAGCAAAT TCAAGATTTT CGGGACAAGA
CCAGTGACAA GTTTGACTTC GTGGCTCACA AATCAGGGGT TCATAAGTTC TGCTTCACCA ACAAGTCTCC TTATCATGAA
ACTGTCGATT TTGATGTACA TGTTGGACAC TTCTCTTACT TTGAGCAGCA TGCAAAAGAT GGTAATGCCT CTTCTATGAA
GTCCACTTTC TTTATTTTTC TCGTGTAAAC ATTGCTGTTT AATTTCATGG AAGTCTGTAA AGCGAGGGAA TTTTTTTGTT
GAAACTTCTG TGACTGTTTT TGCAGAGCAT TTTACCCCCT TGCTGGAGCA AATAGGAAAG TTGGAGGAAG CTCTATACAA
CATTCAGTTT GAACAGCATT GGTTAGAGGC TCAGACTGAT CGCCAAGCAA TAGGTAATTA TTTAAGGTTT ACTTTTATGT
TTATCATACG ATTTTCTTTT TCTCTGGATA CAATTTTTCA TGTTCATCAG TTAAACATAT AATTGTGCTA AAGACAAACA
TACCTTGTTT CTGTATGCAG TCTTGTTTTA TGTTCTTGAT ACTATTTTAT ATTAAATTCT TGTCGCCATG TGATCATCCT
AATTTATTCA GTTACCATAC CAAAAGAGAC CACCCTGTTG AGAACACTAG TTCCTATCGT TTTGATTGTG TTCACTGGCT
CTCCTTTGAG GCCTGAGTGT TCCCTATACT CAAGTGCTAC ATCGATGCGA TGTGATGCAA TGCACGCACT ATTCTGATTG
ATGGGAAATA GCTGTTTCAA TGCACCCTTT GCGTATATTC CAAAGTTGTG TTTAGTGAAA TGGAACACAC TCGTTATTGG
TTGAATGTCC ATTTTTTGGC TTATGATCTT AAAACCAAAA CCAACAAACT GAGCATCTTT GTCTTGTTTT CTTCTGTTGT
TAACTCTTTC TTGACTGCAG ATGAAATATC ATATTGACTT ACGTTTGGAA TATGTATGCA GTGAACGATG CAATGAGCCG
AAGAGCAGTA CACAAGGCAA TTTTTGAATC AGCCGCACTG ATTGGGGCTA GTGCGATTCA AGTCTACCTT CTACAGCGAT
TGTTTGAACG AAAACTGGGT ACCTCAAGAG TTTAGAGCTT CCAAATGTAT TCAGAAACTG TAACAGTACA GACGAGAATG
ATATTTTGAA CTTTTTTTCT TCTGTTTTCA TCACTTGGAT ATTTATATAA CTAGTTCTAC TTATAATACC TGTGGAAAGA
TGTTATTTAA TGTTAATTAT AGTTCATTTC ATTTGCCATA 

>Vigan.03G008400.01
GTTTTGATTC TGTGGATCCG TGATTTTGAG ATGAGTATCT GAATTAACCT ATTGTTTGGC AGATGAGATT ACCATCGTTG
AGGCATGCTT TGGTGTTCGT GTTAATTGGG GCATTGTGGA ACTTGCAGAG GTCGGAGGGT ATTCGATTTG TGATAGACAG
GGACGAGTGT TTCTCCCATG ATGTCAAGTA CGAGGGTGAC ACTGTTCATG TCTCTTTCGT TGTTATCAAG GCTGATTCTC
CCTGGCATTA TGGCGACGAA GGTGTCGATC TCGTGGTAAA GGGTCCCTCT GGTGAGCAAA TTCAAGATTT TCGGGACAAG
ACCAGTGACA AGTTTGACTT CGTGGCTCAC AAATCAGGGG TTCATAAGTT CTGCTTCACC AACAAGTCTC CTTATCATGA
AACTGTCGAT TTTGATGTAC ATGTTGGACA CTTCTCTTAC TTTGAGCAGC ATGCAAAAGA TGAGCATTTT ACCCCCTTGC
TGGAGCAAAT AGGAAAGTTG GAGGAAGCTC TATACAACAT TCAGTTTGAA CAGCATTGGT TAGAGGCTCA GACTGATCGC
CAAGCAATAG TGAACGATGC AATGAGCCGA AGAGCAGTAC ACAAGGCAAT TTTTGAATCA GCCGCACTGA TTGGGGCTAG
TGCGATTCAA GTCTACCTTC TACAGCGATT GTTTGAACGA AAACTGGGTA CCTCAAGAGT TTAGAGCTTC CAAATGTATT
CAGAAACTGT AACAGTACAG ACGAGAATGA TATTTTGAAC TTTTTTTCTT CTGTTTTCAT CACTTGGATA TTTATATAAC
TAGTTCTACT TATAATACCT GTGGAAAGAT GTTATTTAAT GTTAATTATA GTTCATTTCA TTTGCCATA

>Vigan.03G008400.01
ATGAGATTAC CATCGTTGAG GCATGCTTTG GTGTTCGTGT TAATTGGGGC ATTGTGGAAC TTGCAGAGGT CGGAGGGTAT
TCGATTTGTG ATAGACAGGG ACGAGTGTTT CTCCCATGAT GTCAAGTACG AGGGTGACAC TGTTCATGTC TCTTTCGTTG
TTATCAAGGC TGATTCTCCC TGGCATTATG GCGACGAAGG TGTCGATCTC GTGGTAAAGG GTCCCTCTGG TGAGCAAATT
CAAGATTTTC GGGACAAGAC CAGTGACAAG TTTGACTTCG TGGCTCACAA ATCAGGGGTT CATAAGTTCT GCTTCACCAA
CAAGTCTCCT TATCATGAAA CTGTCGATTT TGATGTACAT GTTGGACACT TCTCTTACTT TGAGCAGCAT GCAAAAGATG
AGCATTTTAC CCCCTTGCTG GAGCAAATAG GAAAGTTGGA GGAAGCTCTA TACAACATTC AGTTTGAACA GCATTGGTTA
GAGGCTCAGA CTGATCGCCA AGCAATAGTG AACGATGCAA TGAGCCGAAG AGCAGTACAC AAGGCAATTT TTGAATCAGC
CGCACTGATT GGGGCTAGTG CGATTCAAGT CTACCTTCTA CAGCGATTGT TTGAACGAAA ACTGGGTACC TCAAGAGTTT
AG

>Vigan.03G008400.01
MRLPSLRHAL VFVLIGALWN LQRSEGIRFV IDRDECFSHD VKYEGDTVHV SFVVIKADSP WHYGDEGVDL VVKGPSGEQI
QDFRDKTSDK FDFVAHKSGV HKFCFTNKSP YHETVDFDVH VGHFSYFEQH AKDEHFTPLL EQIGKLEEAL YNIQFEQHWL
EAQTDRQAIV NDAMSRRAVH KAIFESAALI GASAIQVYLL QRLFERKLGT SRV*