GBrowse Details

Vigan.02G333300.01

Basic Information:
Name: Vigan.02G333300.01
Multiple alignment
Variant Information
Position: Chr02:44844652..44847262 (- strand)
Length: 2611
Functional Information:
Description: Similar to Uncharacterized protein. [G7IMU5, Medicago truncatula]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.32,24.66,63.20,29.64,68.63,149.27 ,30.61,43.57
Automatic updates:
Name: BT089140 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-1O11 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251814 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306687 (LOC100306687), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:44844652..44845051 (- strand)
Length: 400
Type: three_prime_UTR
Position: Chr02:44845052..44845372 (- strand)
Length: 321
Type: CDS
Position: Chr02:44846718..44846849 (- strand)
Length: 132
Type: CDS
Position: Chr02:44846944..44847072 (- strand)
Length: 129
Type: CDS
Position: Chr02:44847073..44847262 (- strand)
Length: 190
Type: five_prime_UTR

>Vigan.02G333300.01 class=Sequence position=Chr02:44844652..44847262 (- strand)
AAGAAAAAAA AAAAACAGAG CTGCATCAGT GTATTGCATT GCATTCCCAC CACATGGGCA GACACGTGAT CTAGGATCTC
TCTTTCTCTC TCTCTGGGAT CTGCTTCCGT CTCTTTTCAA TTCTCATTCT TCATTTTCGT TCCTCCGATC TGCGACTGTT
CTCTCTTACC CCAACACAAC ACCACACATC ATGTTTCTCT TCGACTGGTT CTATGGCATT CTGGCTTCCC TTGGTCTATG
GCAGAAAGAA GCCAAGATTC TCTTCCTCGG TCTCGATAAT GCCGGCAAGA CCACTCTTCT TCACATGCTC AAAGACGAGG
TTGCCTTCCT CTCTTCTTTT CACCCTCTTC ACATTTTTTT TCTTCCCAAT CGTTCAAAAA TTATCTTTTT ATAATTTTGA
TACTTGGTTG CAGAGATTAG TTCAGCATCA GCCGACCCAG CACCCCACTT CGGAGGAATT GAGCATTGGG AAGATCAAGT
TTAAGGCTTT CGATTTGGGG GGTCATCAAG TTGCTCGCAG GGTCTGGAAA GACTATTATG CCAAGGTTAT TTATTTATTT
ATTTATTTTG TTAAATTTGT TTTAACCTCT TGATCTTTAT GCTGGTCATC GATTTTTTTA TGTTTCTTTG GTGGTTATGA
GCCATGGGTT GTGTGATTTT GGAGTTTCTG AAAGTGGGGT TTGTCTAATA TGAGGCACTC CCAGTTGCAT GGGACGGAAC
ATGTAGCCGA TGATAGGTTT TTGGGCTTTG TAATGGTTTA TTGCTTCGTT TTGTTTACCT GATTGCTTTC CATAAGGTTG
TGATGCAACC AACAATTTCA TAACCTGGTT ATTGTATTTT TAGTTCCTTT AGGAACTTAA CTTTGACTCT GTTTGGATAA
ACTTCTTCAT AAACATGCCT ATAGGAGAAG GAATTAAAGA AATATGAAAT AAGTTTCTTT CATGCATAGG CTAAAATCAG
ATTTATGGCC AAGCTCCCTC TTAATCATTT TTTTGGGTTT ACTCAGTCAA TATGGCATTT CTACAATAAT GTTTCATTGG
CTGGTTATGA CTTCTTCACT GACCTTAAAA ACTCAGCATC TTTACTTCCA TGCTGGCTTG TTCATTATGG AGTGCTAGAT
TTTCTGATGG GTGTTTTGTG CTGTGGTTTT TGTTGATGAA TTGTTGCTGC TTCCGTGAAA CTTTTGCTCT CAACATTTAT
AGTTTGGGTT CTGGCTTGTG CAACATTTTT TCTGATTCTC GCTTCTGGTT AATAATCTAG TATGACTCAA CTGTCTGCTT
GAATTTTCAC AAGTGCTTGT GGATCCACCA TACATGCCTT CATAATCCCA GATGAGGCTC TTTGTATTTA TCTGATTCAT
GGGAGGCAAA TATTGACTGT GGAAATTTCG CTGATAGCAC CTCTCAATCT TTTTGGAGTT GTTTACTAGT TGATTTCCTA
ACATATCCTG TTTTTTCCTC ATGAATGAGA AAGAAGTAAC GTACACAAGA GTGGAGGAAC AAATAAAAGA AGCTTAGGTT
TGTGTACTAG GATGATTATC AGTCTTCCTA ATAAACTGAA TTATCCTTTT AAGCATCTGA AGAAAATCAG GATTCAAGCC
ACAATCATAA ATTTATGCAT TCTTTCACTT TGAGGGAGGA GATGTATCTT GAAACTAAAA TATGAACTTC GTTTGGTCTG
TGTTGTTCAT TATCTGGATT CATAACCTTT TCTATTCACC AATTCTGCTA AATGTTTGAT TCACCTTTCC ACTATAGCTT
CTTAAAGTTT GGTGATTTCT TTAGCGTCAA CAAGTTCTTC ACATGTTTTT ACCTAAGCTG CAATGACTAT GATGATGAAG
ATGATATTGT TCTTGGATAC TTCAGAATTC TCACATTGCT GTTTTTCCAG GTGGATGCTG TTGTATACCT GGTCGACGCC
TATGACAAAG AGAGGTTTGC AGAATCTAAG AAGGAGCTTG ATGCTTTGCT TTCAGATGAA GGCTTGGCAG GTGTTCCTTT
TCTTGTGCTT GGCAACAAGA TTGACATCCC TTATGCAGCA TCAGAAGACG AGCTCCGGTA TCATCTAGGC CTGACCAATT
TCACCACTGG CAAAGGAAAG ATCAACCTCA CAGACTCCAA CCTTCGACCC CTCGAAGTGT TCATGTGCAG CATTGTGCGC
AAGATGGGGT ATGGTGAAGG CTTCCAGTGG CTTTCCCAGT ACATCAAGTA GAGTCTTTGT TCATCTGTAG TTCCCCTTTC
TCTTGTCAAC CAGCACTGTC TGCAGTTACA TCAGAAGATC TTTTGACTTT GCTTTTGCTT TTGATGATTT TTGATTGGAT
TATTTGATAC AACTGCAGTG ATATTACATG ATAAAATTTG TATCTTGAAA GAATTTTTTG GGAAATGTTC TCCTTTACAT
ATGACTCGAT TCTGTTGTAG GATGGTATGA CTTGGCAGGA ACTATTAATA AATCTGGAAG AATCTTAGTC CATTTCCTTC
CTTGTTACAT ATGAATGGTG GCTGAGTTTT CTCTTATTTG TACCTTACCT GGTTATGATT TTGCAAATGA GAATAGAGAG
GAATGTGCTA TTGAAATAAA ATTATTATAA CACACTGTCA TTGTATTGTG A

>Vigan.02G333300.01
AAGAAAAAAA AAAAACAGAG CTGCATCAGT GTATTGCATT GCATTCCCAC CACATGGGCA GACACGTGAT CTAGGATCTC
TCTTTCTCTC TCTCTGGGAT CTGCTTCCGT CTCTTTTCAA TTCTCATTCT TCATTTTCGT TCCTCCGATC TGCGACTGTT
CTCTCTTACC CCAACACAAC ACCACACATC ATGTTTCTCT TCGACTGGTT CTATGGCATT CTGGCTTCCC TTGGTCTATG
GCAGAAAGAA GCCAAGATTC TCTTCCTCGG TCTCGATAAT GCCGGCAAGA CCACTCTTCT TCACATGCTC AAAGACGAGA
GATTAGTTCA GCATCAGCCG ACCCAGCACC CCACTTCGGA GGAATTGAGC ATTGGGAAGA TCAAGTTTAA GGCTTTCGAT
TTGGGGGGTC ATCAAGTTGC TCGCAGGGTC TGGAAAGACT ATTATGCCAA GGTGGATGCT GTTGTATACC TGGTCGACGC
CTATGACAAA GAGAGGTTTG CAGAATCTAA GAAGGAGCTT GATGCTTTGC TTTCAGATGA AGGCTTGGCA GGTGTTCCTT
TTCTTGTGCT TGGCAACAAG ATTGACATCC CTTATGCAGC ATCAGAAGAC GAGCTCCGGT ATCATCTAGG CCTGACCAAT
TTCACCACTG GCAAAGGAAA GATCAACCTC ACAGACTCCA ACCTTCGACC CCTCGAAGTG TTCATGTGCA GCATTGTGCG
CAAGATGGGG TATGGTGAAG GCTTCCAGTG GCTTTCCCAG TACATCAAGT AGAGTCTTTG TTCATCTGTA GTTCCCCTTT
CTCTTGTCAA CCAGCACTGT CTGCAGTTAC ATCAGAAGAT CTTTTGACTT TGCTTTTGCT TTTGATGATT TTTGATTGGA
TTATTTGATA CAACTGCAGT GATATTACAT GATAAAATTT GTATCTTGAA AGAATTTTTT GGGAAATGTT CTCCTTTACA
TATGACTCGA TTCTGTTGTA GGATGGTATG ACTTGGCAGG AACTATTAAT AAATCTGGAA GAATCTTAGT CCATTTCCTT
CCTTGTTACA TATGAATGGT GGCTGAGTTT TCTCTTATTT GTACCTTACC TGGTTATGAT TTTGCAAATG AGAATAGAGA
GGAATGTGCT ATTGAAATAA AATTATTATA ACACACTGTC ATTGTATTGT GA

>Vigan.02G333300.01
ATGTTTCTCT TCGACTGGTT CTATGGCATT CTGGCTTCCC TTGGTCTATG GCAGAAAGAA GCCAAGATTC TCTTCCTCGG
TCTCGATAAT GCCGGCAAGA CCACTCTTCT TCACATGCTC AAAGACGAGA GATTAGTTCA GCATCAGCCG ACCCAGCACC
CCACTTCGGA GGAATTGAGC ATTGGGAAGA TCAAGTTTAA GGCTTTCGAT TTGGGGGGTC ATCAAGTTGC TCGCAGGGTC
TGGAAAGACT ATTATGCCAA GGTGGATGCT GTTGTATACC TGGTCGACGC CTATGACAAA GAGAGGTTTG CAGAATCTAA
GAAGGAGCTT GATGCTTTGC TTTCAGATGA AGGCTTGGCA GGTGTTCCTT TTCTTGTGCT TGGCAACAAG ATTGACATCC
CTTATGCAGC ATCAGAAGAC GAGCTCCGGT ATCATCTAGG CCTGACCAAT TTCACCACTG GCAAAGGAAA GATCAACCTC
ACAGACTCCA ACCTTCGACC CCTCGAAGTG TTCATGTGCA GCATTGTGCG CAAGATGGGG TATGGTGAAG GCTTCCAGTG
GCTTTCCCAG TACATCAAGT AG

>Vigan.02G333300.01
MFLFDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQVARRV
WKDYYAKVDA VVYLVDAYDK ERFAESKKEL DALLSDEGLA GVPFLVLGNK IDIPYAASED ELRYHLGLTN FTTGKGKINL
TDSNLRPLEV FMCSIVRKMG YGEGFQWLSQ YIK*