GBrowse Details

Vigan.02G305400.01

Basic Information:
Name: Vigan.02G305400.01
Multiple alignment
Variant Information
Position: Chr02:42192169..42195668 (+ strand)
Length: 3500
Functional Information:
Description: Similar to Uncharacterized protein. [I1L1H7, Glycine max]
GO: Biological Process: translational initiation (GO:0006413)
Molecular Function: translation initiation factor activity (GO:0003743)
InterPro: Translation initiation factor SUI1 (IPR001950)
Density-regulated protein DRP1 (IPR005873)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:125.43,79.02,46.61,40.11,60.53,95.10 ,29.28,43.55
Arabidopsis thaliana homolog: AT5G11900.1
Automatic updates:
Name: NM_001248332 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306708 (LOC100306708), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248332 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative translation machinery-associated protein (LOC100306708), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:42192169..42192436 (+ strand)
Length: 268
Type: five_prime_UTR
Position: Chr02:42192437..42192584 (+ strand)
Length: 148
Type: CDS
Position: Chr02:42192704..42192793 (+ strand)
Length: 90
Type: CDS
Position: Chr02:42192990..42193042 (+ strand)
Length: 53
Type: CDS
Position: Chr02:42193154..42193235 (+ strand)
Length: 82
Type: CDS
Position: Chr02:42193559..42193626 (+ strand)
Length: 68
Type: CDS
Position: Chr02:42194353..42194436 (+ strand)
Length: 84
Type: CDS
Position: Chr02:42195121..42195177 (+ strand)
Length: 57
Type: CDS
Position: Chr02:42195178..42195668 (+ strand)
Length: 491
Type: three_prime_UTR

>Vigan.02G305400.01 class=Sequence position=Chr02:42192169..42195668 (+ strand)
CAAAATTTAC ACACGAACTC CATTGAAACA AATGAAAGCA CAGGGGTTAA AGTGCAATTA ATTAAATTTT TTATTTATTT
TTCTTTAAAT TGAGAGACTC CCTACACGAC ACCGTACCAG GGAATCATCA AGGTCCCTCC CTTCACCGCG CCATCGATCA
CCATCGTCTT TTCTCTGCGT TGCAAAAACG CACCGTTTTG TTAGTGTTTT CGTTCTCAAG AAAATTGCAA AAGTGAAGCA
GGGTTTGCAA GCTTGTGTTT AAACAACAAT GGCGGAGAAA CCCCAACCGG TTCGGGTGCT GTACTGTGGG GTGTGCAGTT
TGCCTCCCGA ATACTGCGAA TTTGGATCCG ATTTCGAAAA ATGCAAACCC TGGTTGATCC AAAACGCCCC TGACCTATAC
CCTAATCTTC TTAAAGGTAC CTTTCCTTTC TTTCTTTCTC AAGAAATTCA ATATTTCCCA ATTTACTCTT TTTTTTTTTT
ATTTCGATCA TTCCGATTTA ATTCAAATGC GAATTTTTAT TTTTTTTTCG CGCAGAGGCA AATGATAAGG GAGCTGATAA
CGTTGCTGAC AAGCTGCAAA GTACCGGTAT ATCGTCAGGA GCTGGTGATG GAGCTGCTTC CTCAGGTATT TTTATTTTTA
ACTTTTGTTT AGTGTGCTTG AGATTGAAGA AGGTTGATAT TCCGTAAATT TTAGAATTTG TATTTTATTT TGTGACCGTT
AATTTAGATG AGTTGTTTGG CTTTCAATGA CATGAGTTTT TTGTGATTCT AGCTTAGTCA ATGTGATTCT CTGATGGTGT
GTGTTGGTTT TGATGTTTCA GCACCGAAGC AAGAAGAAGT GAAGCGTCTT CCGGGTGGGA AGATAAAGAA GAAGGCATGT
CTTGGAATTA TTTAAGCCTC TGTAGTGAAC GTACTTGTTG TATGATGCTG AATGTCATAG TTTCATGTCG TTTGGTGTGA
TTGGATGTGA TTTTGCTCTT TTCAGGATAA GCAAGAGGTG GTTATTGAAA AGGTTGTACG TAACAAGCGA AAGTGTATCA
CCACTGTGAA GGGCCTGGAG CTTTTCGGTG AGCTATTTCT GTTATTCTCT TGGGCATTAT TTGGATGTCT TAAGGACAGG
TAGAATATAA AGATGAATTG GGATGAACTT GTCATACCAG CAGTCTGGAC GTTTCATGGT GAAATATGGG AAATTTTTTA
TTCTATAGGA TGGAATTAGA TAATATTGAC TCCTCCTTTT TCATTTCATT TTAAACAACC CAAAAAGCTA TAACTAACAT
CATTTCATTT CATCCCTTTC TATTCAGTAT CAAGACAAAC ATAGACTTAA GGTAATATTA CATAGGTGTG GTTTGGTGTT
TAACTTTTTT TTTTCTTTTA TTGCATTCAG GTGTCAAGCT CAGCGATGCT TCCAAGAAAC TTGGGAAAAA GTTTGCTACA
GGAGCCTCTG TTGTCAAGGT TTGCTGAAAT TTTGTATGGT GTTCATAAAA TGCATGTTGT GACCCTTTTT CCTGGGATTT
TTCTTTTGTT TTCTTCCAAA AAAATTGATT ACCAATTTAC TAAAGAAAAC ATTTTTCAAC TCAAAATAAA CTAAGCCAAA
CCATAGTTGT CAATATCGCC AAAGTTATTG GGGAATTGTG TCATTGAGCG GCAAAAGTGG AATATTGTTG CAATTTGGAG
TAGCTGCTGT TACAGCAGCA ATAGTGGACA AAATCATGGA AAATTGCAGA TGGAGCGAGT GCTATTGGAG TGGGTCACAA
AAACTTGTTT AAACAATGAA ACAGCGCTAT TTAAGGTTTT TTAGGGGTCA ATTTGGAATG AATCCCCCTT CTATGAATAA
GAATTGACAC CGTTGTTTCT TAGTCTTGTA ACACTCTGTT ATCCATAGTT TTTTTATTAT CGTCTCTTAG ATAATCTGGT
TAACCGTGAT CTTTTCGGTC TTCGTTCTGT CCGTGTTCTT TTATTTAATC TCTCTGAAAC ATTTCTTTCA TCTCCTTGTC
TTGTGCTCTC TTCTAATTGG TTACCATAGT GGCTATCTTG CTACCCTCTA TTCTGCTATA TAGTGTTTAA GAGGACAATT
CCTCTGCACT GGTATTTGGG ATTGACAACT ACGATCAACA CCTAGTACTG TTGGTTCATA TATGGATATA ATGTCTTACA
CTTTTGTGGA TTGATTGATG TTAGGGACCA ACCGAGAAAG AACAAATTGA TGTTCAAGGG GATATAGCTT ATGACATCGT
GGAATTCATT ACAGATACAT GGCCTGATGT AAGTAATTTT GGTTGTTGGT TGTTTGGCAT TGTAATTGTG TAATCTAATT
TAAACGTATG TATTGTTGAC AGTGATTAAA AGAAACAATT AAAAAGGAAA ATTAGAGTTA TCAAGTTTCA GTAACATAAT
TTCCATTATA ATCTTCTCTT GTGGGAGACC AATGCATATT TTAATTTGGT TATTAAACTG AGCAAGGAAA TTTGTTGTTC
AGATCGGCAA TCTATCTTTG ACACCATCTT ATATGATATA TGGGACATGT CCTTCATCTA TGATACTGCA GCTGAATGTA
GCCAACATAT TTCATGCATG ATATGGTTAA TATTTTGTTT TCAGTACTGA TGGATGAATT TGGTCATGAA AATGTTTGTA
AACATTAGCT GTAAAGATGC ATCTGTTTTT ATATGAATGT CATCGGCTAA GATAGGCCTG CTGCTTATTG AAAGATATGT
TGTTAGTGAG ACTATATCTA TTTTTGTTGA CATCTATTAC TGACTCCATT TGTTTGACAT CTTTAATCGA TGAGTCTAAA
CAAAAATGTA AGTAATCTCT AGTTAGCTCA AAGAATCCTT TGAAAAGCGT TTCATATGTT TTCTTTGTTA TGATTAATTT
CAAGATAGTA GGAGACCTGG AGTTAAATGG TTTAAAATCT CGTGTGATCG AAAATCTACC TTCCTTTTGC AGGTTTCAGA
AACAGCAATT TTCTTTATAG AAGATGGGAG AAAGGTTCCA GCTGCTTGAT TTTGATATCC TGGCATTAAA ACTTCGTACT
GGTTGCTAGA CTCTTCAATA TTACTGTAAT CCCCCAATGT CCCCTTTTTC TTACCATATC CCCCAAAAAA AGAACATAGT
TTGGTCTCGA TGGACATCAG CATGTGTACT TTTAGTTTAA CGACAATTTA ACTAGTGATG TGTGTAAAGA GGCAAGAGGA
AAAAAAAGGT TCCTTTTCAT CAATTTTGTA TTTTCATTGA GGTTTTAAGC CATATATATA AGTTGTGGGG ATAAGGCTCT
GCTTGCATGA AATTGCCAGT CGCAGAATCC TTTTACATAA ATTTATAATA ATGCAGGCTA TGGATTCTGA ACATAAAACG
GGAATTTAGA TAAATTAATC TGTGTCATTT ATCATTTCGT TCTGTTCGGA CTTCGGTTCG AAGGAAGGGG ATGAGGGGCG
TGTGTCCCAT TCAAAGTTGA ACGCGTCCTT GTTAGTAAAA GTTTGATTTG TTTGTACACA 

>Vigan.02G305400.01
CAAAATTTAC ACACGAACTC CATTGAAACA AATGAAAGCA CAGGGGTTAA AGTGCAATTA ATTAAATTTT TTATTTATTT
TTCTTTAAAT TGAGAGACTC CCTACACGAC ACCGTACCAG GGAATCATCA AGGTCCCTCC CTTCACCGCG CCATCGATCA
CCATCGTCTT TTCTCTGCGT TGCAAAAACG CACCGTTTTG TTAGTGTTTT CGTTCTCAAG AAAATTGCAA AAGTGAAGCA
GGGTTTGCAA GCTTGTGTTT AAACAACAAT GGCGGAGAAA CCCCAACCGG TTCGGGTGCT GTACTGTGGG GTGTGCAGTT
TGCCTCCCGA ATACTGCGAA TTTGGATCCG ATTTCGAAAA ATGCAAACCC TGGTTGATCC AAAACGCCCC TGACCTATAC
CCTAATCTTC TTAAAGAGGC AAATGATAAG GGAGCTGATA ACGTTGCTGA CAAGCTGCAA AGTACCGGTA TATCGTCAGG
AGCTGGTGAT GGAGCTGCTT CCTCAGCACC GAAGCAAGAA GAAGTGAAGC GTCTTCCGGG TGGGAAGATA AAGAAGAAGG
ATAAGCAAGA GGTGGTTATT GAAAAGGTTG TACGTAACAA GCGAAAGTGT ATCACCACTG TGAAGGGCCT GGAGCTTTTC
GGTGTCAAGC TCAGCGATGC TTCCAAGAAA CTTGGGAAAA AGTTTGCTAC AGGAGCCTCT GTTGTCAAGG GACCAACCGA
GAAAGAACAA ATTGATGTTC AAGGGGATAT AGCTTATGAC ATCGTGGAAT TCATTACAGA TACATGGCCT GATGTTTCAG
AAACAGCAAT TTTCTTTATA GAAGATGGGA GAAAGGTTCC AGCTGCTTGA TTTTGATATC CTGGCATTAA AACTTCGTAC
TGGTTGCTAG ACTCTTCAAT ATTACTGTAA TCCCCCAATG TCCCCTTTTT CTTACCATAT CCCCCAAAAA AAGAACATAG
TTTGGTCTCG ATGGACATCA GCATGTGTAC TTTTAGTTTA ACGACAATTT AACTAGTGAT GTGTGTAAAG AGGCAAGAGG
AAAAAAAAGG TTCCTTTTCA TCAATTTTGT ATTTTCATTG AGGTTTTAAG CCATATATAT AAGTTGTGGG GATAAGGCTC
TGCTTGCATG AAATTGCCAG TCGCAGAATC CTTTTACATA AATTTATAAT AATGCAGGCT ATGGATTCTG AACATAAAAC
GGGAATTTAG ATAAATTAAT CTGTGTCATT TATCATTTCG TTCTGTTCGG ACTTCGGTTC GAAGGAAGGG GATGAGGGGC
GTGTGTCCCA TTCAAAGTTG AACGCGTCCT TGTTAGTAAA AGTTTGATTT GTTTGTACAC A

>Vigan.02G305400.01
ATGGCGGAGA AACCCCAACC GGTTCGGGTG CTGTACTGTG GGGTGTGCAG TTTGCCTCCC GAATACTGCG AATTTGGATC
CGATTTCGAA AAATGCAAAC CCTGGTTGAT CCAAAACGCC CCTGACCTAT ACCCTAATCT TCTTAAAGAG GCAAATGATA
AGGGAGCTGA TAACGTTGCT GACAAGCTGC AAAGTACCGG TATATCGTCA GGAGCTGGTG ATGGAGCTGC TTCCTCAGCA
CCGAAGCAAG AAGAAGTGAA GCGTCTTCCG GGTGGGAAGA TAAAGAAGAA GGATAAGCAA GAGGTGGTTA TTGAAAAGGT
TGTACGTAAC AAGCGAAAGT GTATCACCAC TGTGAAGGGC CTGGAGCTTT TCGGTGTCAA GCTCAGCGAT GCTTCCAAGA
AACTTGGGAA AAAGTTTGCT ACAGGAGCCT CTGTTGTCAA GGGACCAACC GAGAAAGAAC AAATTGATGT TCAAGGGGAT
ATAGCTTATG ACATCGTGGA ATTCATTACA GATACATGGC CTGATGTTTC AGAAACAGCA ATTTTCTTTA TAGAAGATGG
GAGAAAGGTT CCAGCTGCTT GA

>Vigan.02G305400.01
MAEKPQPVRV LYCGVCSLPP EYCEFGSDFE KCKPWLIQNA PDLYPNLLKE ANDKGADNVA DKLQSTGISS GAGDGAASSA
PKQEEVKRLP GGKIKKKDKQ EVVIEKVVRN KRKCITTVKG LELFGVKLSD ASKKLGKKFA TGASVVKGPT EKEQIDVQGD
IAYDIVEFIT DTWPDVSETA IFFIEDGRKV PAA*