GBrowse Details

Vigan.02G263200.01

Basic Information:
Name: Vigan.02G263200.01
Multiple alignment
Variant Information
Position: Chr02:36962986..36965991 (- strand)
Length: 3006
Functional Information:
Description: Similar to protein. [D7LHJ1, Arabidopsis lyrata subsp. lyrata]
InterPro: Protein of unknown function DUF1068 (IPR010471)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:24.07,20.51,34.24,24.85,56.80,85.79, 32.26,40.84
Arabidopsis thaliana homolog: AT2G24290.1
Structure :
Position: Chr02:36962986..36963243 (- strand)
Length: 258
Type: three_prime_UTR
Position: Chr02:36963244..36963545 (- strand)
Length: 302
Type: CDS
Position: Chr02:36965289..36965312 (- strand)
Length: 24
Type: CDS
Position: Chr02:36965434..36965641 (- strand)
Length: 208
Type: CDS
Position: Chr02:36965642..36965991 (- strand)
Length: 350
Type: five_prime_UTR

>Vigan.02G263200.01 class=Sequence position=Chr02:36962986..36965991 (- strand)
GGAGAAGATG TTAGTTATAA TTAGCAACAG TTTGATAGTG GTTTGCTAAC TAAAGTGGGC ATTATCCCAA ACATATGAAA
AAGCAGTGAA AGTAAAATAA TTAAAAAGAA ACATGTTGGA AGACAGTGTA TGATGAAAGA GACACGCGCA GTGTACTTGC
GACTTCTTCA ATCGGGCAAA ACGCACTTAC AACATTAAAG GTGGATTTGG GTCCAACAAC GTTATTACTA TAATTATTGT
TATTATTATT ATTACTAGTT CTTCCTTCTG CTGTGCAGTG GGAAATAAAA TCATTACTGT GAATAGTGTG AATTGGTTTG
GATCAGATCT GTGTTTCTTG TCGGAGAGAT ATGTCACGGG GGAGATCTGA TTCTGGTGGT TGGTTGAGGG GGTGTTTGGT
GGTGTTCGCG GTGGTTTCCG CCTTGGGAGT GTGTGGGCCT GCGCTCTACT GGCGATTCAA GAACGCCATC TCTCTCCGCA
ATTCCCACAA CAAATTCTCT TGCCCTCCTT GCCTCTGCAA CTGCCCTCCC CCACTATCGC TATTCCAACT CGCTCCTGGT
TTGTACCTTT TGCTTTTTCT TCAGATCATG CAAATCAAAA ACGCGTTTTT AATTAATGAA TGAATGAAAA AGATACCCAC
CAATTGTTTG CTGATTTGTT TCTTTTTGGG TATGCACAGG ATTGGCGAAT CTCTCTGTCT CAGGTTTGAG TTTCTCCTCT
ACTTTTTCAT TTTTATATGG TTTCTCTTTT ATTATCTTTA CTATGGTTTT TATGATCTGA TTATCGTCTT TACTAGCAAA
ATATCTTCTT TTTTTCATTT GGTTTTCGCT CTCGTATTTT CTGTTCTGAG TTAGATGTTG GATTTTGAAA CAATGGTGAT
TCCGAGATCT TACATGGTTG AGGGATATGA TATGTTTGAA GAAACTTCTC CTTTAGATGA AATGAATTGG AAGAAAAGGA
TGAAATTCCA TTTTGTTAAA ACTAGTTTAT GCGTTTGTTA AAGAAATAAA ATGCTAGAGA AGGACAATAT TGAGCTTCTA
CAGATTACTG TAGGCATAAA CTAGTTTTAA TTTATGAAGA AGTTTATTTT ATTTTAGTTT GTTAGGATAA ATTCAAATTC
TGAGAGTGTC TAAGCATGCA AACTAACAAC AAAAAACACT GTTGTTAAAT GAAGCTACGA TCACATGAAC AATTGTCAAG
AGCTGACTAT TAAGAGCAGG AATAACTTAG ATCGACCAAG TACTTCAAAA TTGGCAAAAT GTCAGTGTCG TACATGTATC
CAATAGCTAT GCACATACAA TATGCCTAGA TAGATACATA TGGCTCTGAT ATGACTAACC ACTCGAAGAT ATGGCATATC
AGACTAAGGT AGGAGATATT CATATTCAAC CCTAATGGGA AAGGGATATA GGGAACTTTC TTCTCTCAAA CATGTGTTTT
GGGTTTCTCA TATCACACAT CATAATTTTT ACGGTTTTTG CTTTTCACTT TTTGCACTTG TTTATCCTGC AATATTGCTG
CTCTTCCATG CTCTCTAGCT TCACACATCA CATCTGTTAT TCTGTTAACG TTTCATTCAC TTCATTGAAG TATCATATCC
TCTTCTATTC TGTTTGTTTT ACAGCATTTT TTATGTGTAA ACAGTTGCAT CTAAGTTGTG ACTTGATTTT TGATGAATTT
TCTGCATCCC TGTATCCGTG TGGTACCATA CCACAGACCT TTACTAAGTT TTTAGGTTCT TAGCTAGACC TTTATGCCAT
GTGATTTGAT CTCTTGGCTC AAGTTCAGGC GTGACTCTTT TTTCTTGCTA ATTTGTTTTT CATGTTTGGA TAATTAAAGA
CCTGAAGGTT AAATTAAAGT TTTAGTTCGT TAACATTTTT TTTTTCTTTT TAAATCAGTC TTCACACTTA AAAAATTGTT
GAAATAGTTC CCTTTGTCAT TTTCTGTCAT AACACTTTCA TCTGGCTAAC CTGGTGGAAA TTTCTTTTGT CTATATATTA
CTTCTTTATT GAAAAGGCCA ATTTCACCAA ATTATGTGCA CCTTTTTTTA ATTTGGTAGG TGCTTCTTTA AATGCTCTGT
CGATCAATGT AAAATGGCTT ATATGGACTA TATTAGCAGA AGGAATTAAT TTCAAAACAT CTGAGAATAG GAGAACTGAT
TTAAAAAAAG ATAGTGATTA AATTAAAGAC GAGTAAAAAC TATACAACAT TAAGTACTAA GACTCTAATA TAATCAGGCC
GGTGAGGAGG TGCTATTGCT TTTAAATAGG AAATCTAAAT TCACATTTTC TCAAATTTCT TATTTGTAAT CAGTGTCATG
ATGAGTATAA AGAGTATGGC AGCTACTAAT CACGTTCTTG ACACTATCAT GCTCAAACTT GTTACTAATT TTGGTACTGG
TGACTGCATA GTGCATGTGA ATAAAATCAT TTATGCTGAT AAACAGATTG TGGAAGTAAT GACCCGGATC TAAAGGAGGA
GATGGAGAAG CAGTTTGTGG ACCTTCTAAG CGAAGAGTTG AAGTTGCAAG AGTCTGTTAC TGAGGCAAAC ACCCGGCACA
TGAACATAAC TTTGGCTGAA GCAAGAAGAG TGGCATCTCA GTATCAGAGA GAGGCTGACA AATGTATTGC TGCAACTGAA
ACATGTGAGC AGGCAAGAGA ACGAGCTGAG GCCATACTCA TCAAGGAGAG AAAGATAACT GCGGTGTGGG AGCGACGTGC
TCGTCAAATG GGTTGGGAAG CAGAATAACT GCATAAGTTT TGTTATTTAT ATTCTTTATG GCTATAATCA TGATTATGGT
TTTACACAAG AATACAAGCA AAATGCTTGG TTTGTCCACC AATTTAGGTT AAAATTGATA TCCTTACTGT GTTTGTAACT
GTATCCCTTA TATGCTAGTA TCAAACAAAT TTTATGTCAG ATAATTAGTC TGTTACCAAG GTTATAACTC ATGTTCATCG
ACTTGATTAT TTTTATACCC TATATTTAGC TCTGGTTTGA AGTAAA

>Vigan.02G263200.01
GGAGAAGATG TTAGTTATAA TTAGCAACAG TTTGATAGTG GTTTGCTAAC TAAAGTGGGC ATTATCCCAA ACATATGAAA
AAGCAGTGAA AGTAAAATAA TTAAAAAGAA ACATGTTGGA AGACAGTGTA TGATGAAAGA GACACGCGCA GTGTACTTGC
GACTTCTTCA ATCGGGCAAA ACGCACTTAC AACATTAAAG GTGGATTTGG GTCCAACAAC GTTATTACTA TAATTATTGT
TATTATTATT ATTACTAGTT CTTCCTTCTG CTGTGCAGTG GGAAATAAAA TCATTACTGT GAATAGTGTG AATTGGTTTG
GATCAGATCT GTGTTTCTTG TCGGAGAGAT ATGTCACGGG GGAGATCTGA TTCTGGTGGT TGGTTGAGGG GGTGTTTGGT
GGTGTTCGCG GTGGTTTCCG CCTTGGGAGT GTGTGGGCCT GCGCTCTACT GGCGATTCAA GAACGCCATC TCTCTCCGCA
ATTCCCACAA CAAATTCTCT TGCCCTCCTT GCCTCTGCAA CTGCCCTCCC CCACTATCGC TATTCCAACT CGCTCCTGGA
TTGGCGAATC TCTCTGTCTC AGATTGTGGA AGTAATGACC CGGATCTAAA GGAGGAGATG GAGAAGCAGT TTGTGGACCT
TCTAAGCGAA GAGTTGAAGT TGCAAGAGTC TGTTACTGAG GCAAACACCC GGCACATGAA CATAACTTTG GCTGAAGCAA
GAAGAGTGGC ATCTCAGTAT CAGAGAGAGG CTGACAAATG TATTGCTGCA ACTGAAACAT GTGAGCAGGC AAGAGAACGA
GCTGAGGCCA TACTCATCAA GGAGAGAAAG ATAACTGCGG TGTGGGAGCG ACGTGCTCGT CAAATGGGTT GGGAAGCAGA
ATAACTGCAT AAGTTTTGTT ATTTATATTC TTTATGGCTA TAATCATGAT TATGGTTTTA CACAAGAATA CAAGCAAAAT
GCTTGGTTTG TCCACCAATT TAGGTTAAAA TTGATATCCT TACTGTGTTT GTAACTGTAT CCCTTATATG CTAGTATCAA
ACAAATTTTA TGTCAGATAA TTAGTCTGTT ACCAAGGTTA TAACTCATGT TCATCGACTT GATTATTTTT ATACCCTATA
TTTAGCTCTG GTTTGAAGTA AA

>Vigan.02G263200.01
ATGTCACGGG GGAGATCTGA TTCTGGTGGT TGGTTGAGGG GGTGTTTGGT GGTGTTCGCG GTGGTTTCCG CCTTGGGAGT
GTGTGGGCCT GCGCTCTACT GGCGATTCAA GAACGCCATC TCTCTCCGCA ATTCCCACAA CAAATTCTCT TGCCCTCCTT
GCCTCTGCAA CTGCCCTCCC CCACTATCGC TATTCCAACT CGCTCCTGGA TTGGCGAATC TCTCTGTCTC AGATTGTGGA
AGTAATGACC CGGATCTAAA GGAGGAGATG GAGAAGCAGT TTGTGGACCT TCTAAGCGAA GAGTTGAAGT TGCAAGAGTC
TGTTACTGAG GCAAACACCC GGCACATGAA CATAACTTTG GCTGAAGCAA GAAGAGTGGC ATCTCAGTAT CAGAGAGAGG
CTGACAAATG TATTGCTGCA ACTGAAACAT GTGAGCAGGC AAGAGAACGA GCTGAGGCCA TACTCATCAA GGAGAGAAAG
ATAACTGCGG TGTGGGAGCG ACGTGCTCGT CAAATGGGTT GGGAAGCAGA ATAA

>Vigan.02G263200.01
MSRGRSDSGG WLRGCLVVFA VVSALGVCGP ALYWRFKNAI SLRNSHNKFS CPPCLCNCPP PLSLFQLAPG LANLSVSDCG
SNDPDLKEEM EKQFVDLLSE ELKLQESVTE ANTRHMNITL AEARRVASQY QREADKCIAA TETCEQARER AEAILIKERK
ITAVWERRAR QMGWEAE*