GBrowse Details

Vigan.02G237800.01

Basic Information:
Name: Vigan.02G237800.01
Multiple alignment
Variant Information
Position: Chr02:33090922..33096143 (+ strand)
Length: 5222
Functional Information:
Description: Similar to Uncharacterized protein. [I1JXA2, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.20,3.13,7.12,13.88,1.32,0.16,9.12
Automatic updates:
Name: NM_001255369 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max retinol dehydrogenase 14-like (LOC100801384), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:33090922..33090993 (+ strand)
Length: 72
Type: five_prime_UTR
Position: Chr02:33090994..33091123 (+ strand)
Length: 130
Type: CDS
Position: Chr02:33093720..33093951 (+ strand)
Length: 232
Type: CDS
Position: Chr02:33094085..33094164 (+ strand)
Length: 80
Type: CDS
Position: Chr02:33094729..33094882 (+ strand)
Length: 154
Type: CDS
Position: Chr02:33094975..33095053 (+ strand)
Length: 79
Type: CDS
Position: Chr02:33095170..33095257 (+ strand)
Length: 88
Type: CDS
Position: Chr02:33095339..33095385 (+ strand)
Length: 47
Type: CDS
Position: Chr02:33095605..33095787 (+ strand)
Length: 183
Type: CDS
Position: Chr02:33095788..33096143 (+ strand)
Length: 356
Type: three_prime_UTR

>Vigan.02G237800.01 class=Sequence position=Chr02:33090922..33096143 (+ strand)
AAAAGTAGCT GCATGTGTTA GCAGTCTGAG CTTGAAGTGT TATTTGTTTC TGCAACACTC TAAAGCAAAC ACATGAAGGC
AACTCTAAGA TACTTAGCAG GAATGGCAGG CCCTAGTGGT TTTGGCTCAA ACTCAACCGC TGAACAAGTC ACTGAAGATT
CTTCTTGCTT CCTTCCTTCA TCTCTAACAG CTCTCATCAC TGGTAAGTCT CAAAAACAGC TTCTAGAGGC CACCTGGTGG
TAAAAATAAC CATGAAAATC AAGCTCAATT ATCATCTTCA ACTTCCTCTG ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATTTATATAC ACACCCCCCG AAAGTGTCAT AAACCAAGAT TCCCTTTTGT
ATTTTCTTTC CTTATTACCT TGTGTTTTTT CTGGACTTTG ATGATTGGGG AGAGTCTGTT TCTCTAAGCT GAAGGATTCA
TAAGTATATA TGCATGGCTA TATATGGTAC TTGGTTTTGG TTATTCTTAA ATCACCATGT GTGTGTGTAT TGCTTATACT
TTCCCATTTT ACTTGCATTT CTTTGTACTT AATTCTCAGT TTTTCATTTT CCTTTTCGAT TTGCCAGAAA AAATTGAAAA
TTTAGTCCAG TCTGTCAAAA ATTTAGCCTA AGTAGCTGTA TGTATCTGGT GCTTTCTTTC TGATTGATTT TGCTGCACTG
GAAAGGTGAT GAGAGATTAA CTTTGAAGCC TGCAAGCTCT CTCACATCAC ACGAGTTTGC CAATTTAGAT ATGGATGGTG
TGGTTCTTTT TAGCTGCAGA AAGATGAGGT TCTGTTATTT TTGTCTCTTT TGTGCACCCT TCTCTCATCA AATCCAGACA
TATTCATCAC TTGTCTACAC TACGTACACC ACAAACTCAT CATCCAGATC ATATATATCT CCTTTTTCCC ACTCAAATGA
ATAAAAAACA TGCCTCCCAA CATTTTATAA TTCACCCTCA TCTAACAATG ACAAAATCTG TTTGTAACAA GCTTTTGTTA
AATAACTCAA TAATATTATG ACTTGATGTA TTTTACATCG AGTAGTATGT AGGTTATTTC TAGGCTTTAT GACATTGTCC
TTTATCTACA TACATTTATT ATAACTACTA CAATTAATAA ACTTTATTAC ATGTCTTAAC ACTGAAAGCA CTCTTAACCT
TTACAATCTC CTAATTAATA TAACAACTTT CAACTACCTA TATTTAAGTT TATCCAACAT AATTCTATCA CTAAATTTAA
ATGTTTCTTC TATCTTTCAT TCTTCTTCTT TGCATCCCGA TTTTACTAGG TGCACCCCAT ACTGAACTTA TTACTTTCAT
TAATAGTTAG GTTCTTCACT TTCTTTATGG TCGGCTTTGT TTTTATTATG CTTACTTGTT CTTTGTTTTG ACTGTCTTTT
TCTTAACTTT GGTCGACTTG TCCTTAACTG AATTCTTTAT TGTTTATGTG ATCTACTTGT CATTAATTGA ATCCCTCTCA
ATAGACCAAG CTCCTTTTAA GATATCGGAT AATTCTCACA CCTTTTTTAC ACCAAACTCA TCATCCATTT CAAGTCGTCA
CTTCTCATCT TGCACCTCCA AAATTTAAGA TCATTCTCTG CATGCAATTG CTCTTGCAAA CTTAACACTT CCTGTCCACG
ACCTCTACCA CCAAGATCGC TTCTTATACC TCTTGGGTAT CATCCTCTAT CTTGAGTGTT CTGAGCTTCT CCCTTTATTT
GGAGTAGTTA ATCAAGTTGC TCCAATTTCT TCTTCTTTTA TTGATCATGT GCCTCAAGTG ACCCGACATG CTCTTCAACC
GAGAGCATTG ACAAGTCCTT GAACTCCTCA ATAGTGCATC CAATTTTCTC AAATTCGATA AATGACCTTA GTATTTTCTA
CACCACTCGA CAAGTGGGCA ACATTTCTCC ATTCCTTTCA AGCTTATTCA CCACGATCTC AACACGAGAG ATGTACTCAA
CAACTCCTTC AACTTCTTTC ATTCTCATGC TTTCAAGCTT GTCCTTAAAA GTTTGAAGTT TGACCTACTT TACATTATTA
TTTCCTTTGT AGGCCTTCTC TAATATATCT CATGCTTCTT TTAAAAACTT AACATTTGCT ATCTTCTCAA AGTCGAACTC
ATCAACAACT CGGTACAACA CATAGACGGT TGTTTTGTCT CACGATGCTC TCAACACAAC AAGTTAGTCA ATTGTTTGTT
CTTCAATGTC AATGGTTCTT GTTGCTTGTT TTCAACTACT TACCATGCTT CTTGGAAACT AAGGATTGCT TTCATCAACA
TACTCCAATT ATCATAGCTG ACTCTAGATA TTTGCAAGGT TGATCATTTC ACTCAAACTT TTCCAAACAC TCTCTTACTC
TTTTTTCTTA ACATTCAAAC ACTCGGATTC TTTAGCTCTC ATACCAATTT GTTAACTACA AGTCTTTCTT AAATAACTCA
CTAATATTAT GACTTCTTGT ATTTTACATT GAACAATACA TGAATTATTT ATAGGTCTTT TGACATGACC TTTCAAATAT
GCATTAATTA TAACTACTAC AATTAATGAA CTATATTGCA TGCCTTAATT ATTACTAAAA ACACTTCTAA CATTTGTAAT
CTCCTAAGAA AATTAATATA ACAACATGTA ACTATCCACT TAAGTTTACC CAACAAAATC CAAGTATTTT ATAATTAATA
TTATATTTTT GCTAATAAAA GCACGTGTTT TATAGTTTAA CTAACAAAGT TGTTACTGAT TTGAACTTTT CATTGAAGGG
GCAAGTTCTG GTATTGGAGC TGAAACAGCT AGAGTGTTAG TAAAGAGAGG AGTGAGAGTT GTAATCGGTG CAAGGGACTT
GAAGAAGGCC ATGGAAGTGA AAAAGAGCAT ACAAAAGGAG AGGCCAAAGG CTGAGGTTGT TCTGTTGGAG ATTGATCTTA
GCTCTTTTGG TTCTGTACAG AGATTTTGTT CCGAGTTCTT AGCTTTAGAA CTTCCCCTTA ATATTCTCAT GTAAGTTTTG
TCCACCATCA TATTGTTCCA CCTTTTCATA TCATAGTAAT GATGGTTATC ATTGTGAAAC AAGGACAAGT CATTCACATT
TTAGGTGGTT TATACTAATA GTAAGAACAA ATCAATTTTA CAGAAACAAT GCAGGGATAT TTTCTCAAAA CTTGGAGTTC
TCTGAGGATA AAATTGAGAC CACATTTGCT ACAAATTACT TAGGTACTTT TCTGATTATT GATCTTTTCA TAGGGCTTTA
TTAATATCGA TATCATGTTA CTATGTAATT AATATTCACA ATCTTAAACC TGTAGAGGTT GCTTTTATTT TAGTTTTTAT
CAACATAAAA AAGGCAACTT AAACTTGGTT AAACTTAATA TTAAAGAAAG TGCTTGTCAC TGTGATCTGC TCTTAAATAT
TCGTTTTCAC TTTCAGATAA AAAAGTTTAC ATCATCACAT TTCTAAAGGA CGTAGCTTGG TTGGTTTAAG GTCCCCCACC
AAAAACATAT AATACGCAAT CGTCCATATT TTAGGCTCTT TTAGGGTCCA CGACCACAAG CTTATAAGCA CTTTCAGGGT
TAATTTTGGT CCACAGACAC TGAGCACTGG TCATACGTTT TTCTTTATGG GCTCAAAGTC CAAAGCCCGT GTGACCCGTT
TCTAAAGTGC TAAGCTTTTT GTTTTTGGAT TCAAATTTAC CGTTTCATTT TTTAATGGCA AAAATTATGC ATCGTCAATT
TAAGAAGACA TTTATTGAAG TTTCATATTT TTTGTCCTCA ATTGCAGGTC ATTTTTTGTT AACAGAGATT TTATTAGAAA
AAATGATAGA GACGGCTGAG AAGACAGGTA TTGAAGGAAG AATAATAAAC GTTTCTTCTG TCATACATAG CTGGGTGAAG
AAAGATGCTT TTCGTTTCAA CGACATACTC AGTGGAAAAA AGTACAACTA CCTTGTTCTC TGCAAAATTA CAACAGTTCT
GATTGCCTTA CATTTTAGCT ACTTATTGCA TTTCTCTCTT GTAACTATTG TAGATATAAT GGCACACGCG CTTATGCTCA
GTCAAAATTG GCAAATATTT TGCATGCCAA GGAAATAGCC AAGCAACTCA AGGTTGGAAT GACAAATAAC TCCAAACTTT
ATAGTACTTC TTATCTCTTT GAGTGGTGAT TGTCATGCTT TTTGTTTGGC CCACTACATT ATTCATGAGA ATTGGAATAT
AATTACAGGC AAGGAATGCA AGAGTAACTA TCAATGCAGC ACATCCAGGC ATTGTGAAGA CAGGAATTAT TAGAGCTCAC
AAGGGCTTAT TAACGGGTAG TTAAAATATT CATTAATTAT TAATAGACAC TTTACCAAAT GTTGAAACTA CTAAGAATTG
GTAACATTTC CACGCAGATT CCCTATTTTT TATCGCATCA AAGTTACTCA AAACAACATC GCAGGTGTGT AAACAAACAA
GCTCGATTAC ACTTACGTGC AGTGATTTTG AATGCTGGAT TGGTGTAGAA TTATAGATGT GGAAAACAGT GATGGACAAC
CATACATAGG CAAAGCTACT TTACCATGGA TGTCAAATAG TGTGCTTTTG AATTGTAGTT AAACTAGCAA TGTAATATTT
TGTCATTAAG AGGGATGATA ATTATGTCAA TGCGTGTCTG CAGGGTGCAG CAACTACATG CTATGTCGCT CTGAGCTCAA
AAACAGAAGG GATAAGTGGA AAATACTTTG CAGATTGTAA CGAGAGTAAA TGCTCGAGCC TAGCAAATGA CGAGTCGGAA
GCACAAAAGC TATGGAACAA CACCCATGCC TTTCTTCACA AACGACTACG TCAAGCAACA ATTTGAAGCA ATTCCCTTTT
CAAGACACCA TGTATATTAG GATATTCGTT TACCTTAGCC AGCATGCACA AGCAAGATTT GAGGCTTTAA AGGCAACCTG
AAACATCATA ATCATGAGGC ACTATTGTTA GTAGCCTTTC CTGTGTAGCT CCCTTTTGAT TATTTGTACA AATAAGAGAG
AAATAAAACA TAAATCTCTC TGCAAATGCA ATAACAAAGC GATAGTTCAT CTCCTCTATA AAGCAAATAG AGCCAAGGCT
GCTTCACATT AATAATCAGG TACTATCCAA ATCTAACTCT GGAAGGAAAA CTGTGATATC CGTTGTTGAT AAAAAAAACA
AACATTTATA CGACTATTCA AG

>Vigan.02G237800.01
AAAAGTAGCT GCATGTGTTA GCAGTCTGAG CTTGAAGTGT TATTTGTTTC TGCAACACTC TAAAGCAAAC ACATGAAGGC
AACTCTAAGA TACTTAGCAG GAATGGCAGG CCCTAGTGGT TTTGGCTCAA ACTCAACCGC TGAACAAGTC ACTGAAGATT
CTTCTTGCTT CCTTCCTTCA TCTCTAACAG CTCTCATCAC TGGGGCAAGT TCTGGTATTG GAGCTGAAAC AGCTAGAGTG
TTAGTAAAGA GAGGAGTGAG AGTTGTAATC GGTGCAAGGG ACTTGAAGAA GGCCATGGAA GTGAAAAAGA GCATACAAAA
GGAGAGGCCA AAGGCTGAGG TTGTTCTGTT GGAGATTGAT CTTAGCTCTT TTGGTTCTGT ACAGAGATTT TGTTCCGAGT
TCTTAGCTTT AGAACTTCCC CTTAATATTC TCATAAACAA TGCAGGGATA TTTTCTCAAA ACTTGGAGTT CTCTGAGGAT
AAAATTGAGA CCACATTTGC TACAAATTAC TTAGGTCATT TTTTGTTAAC AGAGATTTTA TTAGAAAAAA TGATAGAGAC
GGCTGAGAAG ACAGGTATTG AAGGAAGAAT AATAAACGTT TCTTCTGTCA TACATAGCTG GGTGAAGAAA GATGCTTTTC
GTTTCAACGA CATACTCAGT GGAAAAAAAT ATAATGGCAC ACGCGCTTAT GCTCAGTCAA AATTGGCAAA TATTTTGCAT
GCCAAGGAAA TAGCCAAGCA ACTCAAGGCA AGGAATGCAA GAGTAACTAT CAATGCAGCA CATCCAGGCA TTGTGAAGAC
AGGAATTATT AGAGCTCACA AGGGCTTATT AACGGATTCC CTATTTTTTA TCGCATCAAA GTTACTCAAA ACAACATCGC
AGGGTGCAGC AACTACATGC TATGTCGCTC TGAGCTCAAA AACAGAAGGG ATAAGTGGAA AATACTTTGC AGATTGTAAC
GAGAGTAAAT GCTCGAGCCT AGCAAATGAC GAGTCGGAAG CACAAAAGCT ATGGAACAAC ACCCATGCCT TTCTTCACAA
ACGACTACGT CAAGCAACAA TTTGAAGCAA TTCCCTTTTC AAGACACCAT GTATATTAGG ATATTCGTTT ACCTTAGCCA
GCATGCACAA GCAAGATTTG AGGCTTTAAA GGCAACCTGA AACATCATAA TCATGAGGCA CTATTGTTAG TAGCCTTTCC
TGTGTAGCTC CCTTTTGATT ATTTGTACAA ATAAGAGAGA AATAAAACAT AAATCTCTCT GCAAATGCAA TAACAAAGCG
ATAGTTCATC TCCTCTATAA AGCAAATAGA GCCAAGGCTG CTTCACATTA ATAATCAGGT ACTATCCAAA TCTAACTCTG
GAAGGAAAAC TGTGATATCC GTTGTTGATA AAAAAAACAA ACATTTATAC GACTATTCAA G

>Vigan.02G237800.01
ATGAAGGCAA CTCTAAGATA CTTAGCAGGA ATGGCAGGCC CTAGTGGTTT TGGCTCAAAC TCAACCGCTG AACAAGTCAC
TGAAGATTCT TCTTGCTTCC TTCCTTCATC TCTAACAGCT CTCATCACTG GGGCAAGTTC TGGTATTGGA GCTGAAACAG
CTAGAGTGTT AGTAAAGAGA GGAGTGAGAG TTGTAATCGG TGCAAGGGAC TTGAAGAAGG CCATGGAAGT GAAAAAGAGC
ATACAAAAGG AGAGGCCAAA GGCTGAGGTT GTTCTGTTGG AGATTGATCT TAGCTCTTTT GGTTCTGTAC AGAGATTTTG
TTCCGAGTTC TTAGCTTTAG AACTTCCCCT TAATATTCTC ATAAACAATG CAGGGATATT TTCTCAAAAC TTGGAGTTCT
CTGAGGATAA AATTGAGACC ACATTTGCTA CAAATTACTT AGGTCATTTT TTGTTAACAG AGATTTTATT AGAAAAAATG
ATAGAGACGG CTGAGAAGAC AGGTATTGAA GGAAGAATAA TAAACGTTTC TTCTGTCATA CATAGCTGGG TGAAGAAAGA
TGCTTTTCGT TTCAACGACA TACTCAGTGG AAAAAAATAT AATGGCACAC GCGCTTATGC TCAGTCAAAA TTGGCAAATA
TTTTGCATGC CAAGGAAATA GCCAAGCAAC TCAAGGCAAG GAATGCAAGA GTAACTATCA ATGCAGCACA TCCAGGCATT
GTGAAGACAG GAATTATTAG AGCTCACAAG GGCTTATTAA CGGATTCCCT ATTTTTTATC GCATCAAAGT TACTCAAAAC
AACATCGCAG GGTGCAGCAA CTACATGCTA TGTCGCTCTG AGCTCAAAAA CAGAAGGGAT AAGTGGAAAA TACTTTGCAG
ATTGTAACGA GAGTAAATGC TCGAGCCTAG CAAATGACGA GTCGGAAGCA CAAAAGCTAT GGAACAACAC CCATGCCTTT
CTTCACAAAC GACTACGTCA AGCAACAATT TGA

>Vigan.02G237800.01
MKATLRYLAG MAGPSGFGSN STAEQVTEDS SCFLPSSLTA LITGASSGIG AETARVLVKR GVRVVIGARD LKKAMEVKKS
IQKERPKAEV VLLEIDLSSF GSVQRFCSEF LALELPLNIL INNAGIFSQN LEFSEDKIET TFATNYLGHF LLTEILLEKM
IETAEKTGIE GRIINVSSVI HSWVKKDAFR FNDILSGKKY NGTRAYAQSK LANILHAKEI AKQLKARNAR VTINAAHPGI
VKTGIIRAHK GLLTDSLFFI ASKLLKTTSQ GAATTCYVAL SSKTEGISGK YFADCNESKC SSLANDESEA QKLWNNTHAF
LHKRLRQATI *