GBrowse Details

Vigan.02G214000.01

Basic Information:
Name: Vigan.02G214000.01
Multiple alignment
Variant Information
Position: Chr02:29072524..29075410 (- strand)
Length: 2887
Functional Information:
Description: Similar to ubiquitin-conjugating enzyme E2 27-like isoform X2. [XP_004501732.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal (IPR000449)
Ubiquitin-conjugating enzyme, E2 (IPR000608)
UBA-like (IPR009060)
Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (IPR015940)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.00,35.44,36.28,29.80,51.62,93.43,28.18,32.34
Arabidopsis thaliana homolog: AT5G50870.2
Automatic updates:
Name: NM_001349835 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative ubiquitin-conjugating enzyme E2 (LOC100527458), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001349863 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-conjugating enzyme E2 27-like (LOC100808816), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:29072524..29072598 (- strand)
Length: 75
Type: three_prime_UTR
Position: Chr02:29072599..29072712 (- strand)
Length: 114
Type: CDS
Position: Chr02:29073118..29073207 (- strand)
Length: 90
Type: CDS
Position: Chr02:29073378..29073537 (- strand)
Length: 160
Type: CDS
Position: Chr02:29074689..29074737 (- strand)
Length: 49
Type: CDS
Position: Chr02:29074883..29075060 (- strand)
Length: 178
Type: CDS
Position: Chr02:29075061..29075410 (- strand)
Length: 350
Type: five_prime_UTR

>Vigan.02G214000.01 class=Sequence position=Chr02:29072524..29075410 (- strand)
GTAGGTAACA AATTTCAGAG TGGCGTCGTG TTTTTTTATG ATAAATAAAA CTCAAAAATC AAACCAGATT TCGAGAACAC
GCGTCACTCA GCACCAGTCC GGCAAGGGCA AAGGAAATTG TAACGACGTT TTCCGTAACG GCTGAAAAAA TTATAGTATA
TGTTAAAGAA AAGAGAAAAA ATATATCATT CAGTCATTCC CTCGCTAGTG AAAAAGCCAC ATAACCTTTA TTCTCCCCGC
ACACTTCTTT TCGATCATTT TTGTTTTCCG CTATAAGAGG TGTTTTTTTG GGTTCTCCCC GTCTGTGACT CACTGTCTAG
GGTTTTGTTA TTGGTGGTGA CAGAGTAAAG ATGATAGACT TTGCGCGCGT GCAGAAGGAG CTGGTGGAAT GCAGCAAGGA
CTCAGAGGGA TCGGGCATCA AAGTGAGTCA GAAAAGTGAC GATCTTGTTC AGTTAATGGG CACCATTCCG GGTCCTGTTG
GAACTCCCTA CGATGGAGGC ACTTTTCAGA TTGATATCAC ATTGCCAGGT AGAATAAGTT CTTATTCCCT TTGCCTGTTT
CTTTCATTAC CCTAAATTGT TTTTTCTCCC TCACCCTAGG GTTTCATTTC CCCTCAATTG TTAGGCTCCT TCTTCGGCTT
CGCGTTTTAT TAGTTTCGTT GCTTTTGTTG CAGAGGGATA CCCGTTTGAA CCCCCCAAGA TGCAGTTCAA GACCAAAGTT
TGGTACGAGA ATGAATTGTT ATTTACTGTT CTGTTTTCTT TCCTTTTTTC GCAAAATTTG ATTTGTAAGG AGCATGAGTC
CTTAGCCAAA CTGATATTGT TAAATTTTGT TTTCGTTTCT GCAACCATAT GTGGGTATGG GAAAGGGGAC AAAGTGTGTT
TTGGTTTAGT TTGGAAAGTT TACACTTTGT TGTTTGGGAT ATATTGATAA TTTTAATGCA ATAGAGTGAT GCAGTTTAAA
ACCGTAGTTC AGTATGAAAA TAAATGGTTC TTTACTGTTC TGTCTCCTTA CTTTAAAAAA TCCTTCTGTT TTGGGCTGAA
ATTTGATGTG TATGGAACAT GGAGTCCTTA AAGCAGCTGA TATTGTTAAA TCTTTTGATT TCATTCACGT GCAACTCTCT
CTGGGTATGG AAAAGGGAAG ATAGCGGGCT GTCGTTAGCG AAATTGATAG TTTGTAATGT AATACAAGAA TGTGCTTTGG
GTTTGGATTG GAAGGTGAGC TTTTTCCTAG ACCTATGTGT TGTCATATAT TAATGAATGA CAGAGATAAT TGTAATTTGG
TATTTTGCCA GGATTTTTCC TGATTCGATT TCATTGATGC CGGTTGAGGT TCATTTTAAC TCGCTAGAGA AGCTCAATAG
GCTGATTCTC TTCATAGGAT AGAGTATGGT AGTGTGACAC TTTTTGTCTC TCGATCTTTT GATTTGATGA GTTCTGTATT
TCGTCATGTG TGTATATCGG CTTAGTTTCT GTTGTGCGTG ATTCATGTTA TTATGTTGAG TAAATTGACA AGTTTAATGT
GTTGGCTGCC GAAGTCTAAC ACAAACCTCC TCCCTTACCC GGGGTTCTCT CGTTGATTAT TAAACTGACA AAATATATAC
CTCGCTTGTT TTGGTGTTCT CTCAAATTTG GAGGATAATG AGTTTCCCAC AAGTTTTGTT GCAAACAGCA GACTCGAGGT
TTCAACAGCC CCACATCAGG AGTTCGGACT TCTTCTGAAG TTTTTGATGC TTGAGTTTAT TTTTTCTTTC AGTCTGTATA
AAATGAGCTA TATCTTTTCC GATGCTAATA TAACATTTGA TGCATTACTA TCAGAAAATT GTTGTTTTGA TTGATTAATG
TGTGGATTTT ATTGTCTCTA TTCATCATTG AAGGCACCCT AATATCAGCA GCCAAAGTGG AGCTATTTGC CTGGACATCT
TGAAAGACCA GTGGAGCCCG GCACTCACTC TGAAGACTGC ACTTCTTTCG GTGCAAGCAC TTCTCTCTGC CCCTCAGCCC
GATGATCCTC AAGATGCTGT GGTAGCGAAG CAAGTATGGC TCATTCTGTA GTGCAGCTGT GTCTCTACTT ATGTGAAATG
CTTCTTCTTG TATTCTGTGT GTTAAACTGC TAAGAACAGT ATATTGTTGA AGATTATATG CAACATTTTA GTTTTGCTAG
ATCATCTTTT GTGATTGTAA TTCTGTGTCT ATGGACAATG CAGTATCTTG AAAACTATCA GACATTTGTT AGCACTGCCC
GCTACTGGAC TGAAAGTTTT GCCAAGGCAT CAACACGTGG GATTGAAGAC AGGGTACTAA GTTTGCTGTC CCTTTTGACT
TTTAGAATAT GGATGCACAT AATCGAGCGT CTTTAAATGT CATGACCACT ATGTGACATT GTCTTAACGT TCATGCAGGA
GATTCTGTAT TACTTTCTTA CGTGGATTTG TTTTGGATAA ATTGGTCGTT TAGTATATTG TTTTACACAA GCATATATAT
TCATGTATCT ACTTGACTTT ATTATGTTCT TTAGTGTTTA TTGACATGTA TAACCTGTTT GAGAATATTG TTGTGCTTTT
GACATGGATC ATGCAAAATT ATGAAATCTA AGCTACTTAG GTAATTATTT TCATATCCAT TGTTAGTGAA TCTATTATGA
AAAATACTTA TATATGATAA TTTTATAACA AATGCAGTTT CTTTTTAATT TGGCACAGGT ACAGAAATTT GTTGAGATGG
GATTTCCAGA AGCTCAAGTA AGGAACATTC TGGAAGCTGT TGGTGGTGAT GAAAACTTGG CTCTGGAAAG GTTGCTGCAG
CACCAAGTTT GAAGTATCTT CTGAAGCGTT CTGTCATGGT CAAATTTAGG ATGAGATGTG GCCATAAGAT GATGGAACCA
TATAGAC

>Vigan.02G214000.01
GTAGGTAACA AATTTCAGAG TGGCGTCGTG TTTTTTTATG ATAAATAAAA CTCAAAAATC AAACCAGATT TCGAGAACAC
GCGTCACTCA GCACCAGTCC GGCAAGGGCA AAGGAAATTG TAACGACGTT TTCCGTAACG GCTGAAAAAA TTATAGTATA
TGTTAAAGAA AAGAGAAAAA ATATATCATT CAGTCATTCC CTCGCTAGTG AAAAAGCCAC ATAACCTTTA TTCTCCCCGC
ACACTTCTTT TCGATCATTT TTGTTTTCCG CTATAAGAGG TGTTTTTTTG GGTTCTCCCC GTCTGTGACT CACTGTCTAG
GGTTTTGTTA TTGGTGGTGA CAGAGTAAAG ATGATAGACT TTGCGCGCGT GCAGAAGGAG CTGGTGGAAT GCAGCAAGGA
CTCAGAGGGA TCGGGCATCA AAGTGAGTCA GAAAAGTGAC GATCTTGTTC AGTTAATGGG CACCATTCCG GGTCCTGTTG
GAACTCCCTA CGATGGAGGC ACTTTTCAGA TTGATATCAC ATTGCCAGAG GGATACCCGT TTGAACCCCC CAAGATGCAG
TTCAAGACCA AAGTTTGGCA CCCTAATATC AGCAGCCAAA GTGGAGCTAT TTGCCTGGAC ATCTTGAAAG ACCAGTGGAG
CCCGGCACTC ACTCTGAAGA CTGCACTTCT TTCGGTGCAA GCACTTCTCT CTGCCCCTCA GCCCGATGAT CCTCAAGATG
CTGTGGTAGC GAAGCAATAT CTTGAAAACT ATCAGACATT TGTTAGCACT GCCCGCTACT GGACTGAAAG TTTTGCCAAG
GCATCAACAC GTGGGATTGA AGACAGGGTA CAGAAATTTG TTGAGATGGG ATTTCCAGAA GCTCAAGTAA GGAACATTCT
GGAAGCTGTT GGTGGTGATG AAAACTTGGC TCTGGAAAGG TTGCTGCAGC ACCAAGTTTG AAGTATCTTC TGAAGCGTTC
TGTCATGGTC AAATTTAGGA TGAGATGTGG CCATAAGATG ATGGAACCAT ATAGAC

>Vigan.02G214000.01
ATGATAGACT TTGCGCGCGT GCAGAAGGAG CTGGTGGAAT GCAGCAAGGA CTCAGAGGGA TCGGGCATCA AAGTGAGTCA
GAAAAGTGAC GATCTTGTTC AGTTAATGGG CACCATTCCG GGTCCTGTTG GAACTCCCTA CGATGGAGGC ACTTTTCAGA
TTGATATCAC ATTGCCAGAG GGATACCCGT TTGAACCCCC CAAGATGCAG TTCAAGACCA AAGTTTGGCA CCCTAATATC
AGCAGCCAAA GTGGAGCTAT TTGCCTGGAC ATCTTGAAAG ACCAGTGGAG CCCGGCACTC ACTCTGAAGA CTGCACTTCT
TTCGGTGCAA GCACTTCTCT CTGCCCCTCA GCCCGATGAT CCTCAAGATG CTGTGGTAGC GAAGCAATAT CTTGAAAACT
ATCAGACATT TGTTAGCACT GCCCGCTACT GGACTGAAAG TTTTGCCAAG GCATCAACAC GTGGGATTGA AGACAGGGTA
CAGAAATTTG TTGAGATGGG ATTTCCAGAA GCTCAAGTAA GGAACATTCT GGAAGCTGTT GGTGGTGATG AAAACTTGGC
TCTGGAAAGG TTGCTGCAGC ACCAAGTTTG A

>Vigan.02G214000.01
MIDFARVQKE LVECSKDSEG SGIKVSQKSD DLVQLMGTIP GPVGTPYDGG TFQIDITLPE GYPFEPPKMQ FKTKVWHPNI
SSQSGAICLD ILKDQWSPAL TLKTALLSVQ ALLSAPQPDD PQDAVVAKQY LENYQTFVST ARYWTESFAK ASTRGIEDRV
QKFVEMGFPE AQVRNILEAV GGDENLALER LLQHQV*