GBrowse Details

Vigan.02G213200.01

Basic Information:
Name: Vigan.02G213200.01
Multiple alignment
Variant Information
Position: Chr02:28975397..28977215 (+ strand)
Length: 1819
Functional Information:
Description: Similar to NAC domain-containing protein 2. [XP_003523205.1, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
InterPro: NAC domain (IPR003441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.44,11.73,8.60,3.87,12.90,2.08,13.5 0,5.60
Automatic updates:
Name: MG256389 NCBI(nuccore)
Organism: Vigna umbellata
Description: Vigna umbellata NAR1 mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:28975397..28975601 (+ strand)
Length: 205
Type: five_prime_UTR
Position: Chr02:28975602..28975761 (+ strand)
Length: 160
Type: CDS
Position: Chr02:28975841..28976118 (+ strand)
Length: 278
Type: CDS
Position: Chr02:28976207..28976629 (+ strand)
Length: 423
Type: CDS
Position: Chr02:28976630..28977215 (+ strand)
Length: 586
Type: three_prime_UTR

>Vigan.02G213200.01 class=Sequence position=Chr02:28975397..28977215 (+ strand)
CTCTATTAAA TTTGTCAAAT GGATTTGCCC TCCACCTCAC CAACCCACGT GTTACAACTC ACTCTCTTCC TTTTTATCCC
ATCGCACTAT AAAACCCACC TAGTCTCTTT TCTCATTCCT TTCAATCACA AACCAAAGCA GAGCCAACAA CATTCACCAA
CAACAAACAA CTACAACAAC ACACAAGCGA GAAGAGGAAA AGCAAATGAA GAGTGAATTA GAGTTGCCAC CAGGGTTCAG
GTTTCACCCC ACGGATGATG AGTTGGTGAA CCATTATCTT TGTAGGAAAT GCGCTGGTCA ACCAATTGCT GTTCCTATCA
TCAAAGAGGT CGATTTGTAC AAGTTTGATC CATGGCAGCT TCCAGGTCCG TTTAATTTCA TCTGCCTTTC GTATACTTTC
CATTTCTATC ATTCAATTCA CTCATGATCA TATTCTGCCT GCAGAAATCG GATTTTACGG CGAGAAAGAA TGGTACTTTT
TTTCTCCTCG GGACCGCAAA TACCCCAACG GCTCACGGCC GAATCGGGCC GCCGGAAGTG GGTACTGGAA GGCCACCGGC
GCCGATAAAC CGATCGGAAA ACCGAAGGCG CTTGGGATAA AGAAAGCTCT GGTATTTTAC TCGGGAAAAG CCCCCAAAGG
AGAGAAAACC AATTGGATCA TGCACGAATA TCGGCTGGCC AATGTTGACC GATCAGCCTC CAAGAAAAAT AACAACCTGA
GGGTATGTTT GGCTTTGATT TGCTTTGTTT TATTTTGTTG TTTTGATTTG CTTTGTTTGA AAAGTTTCTG ATTTTGGTGT
TATGGTGCAG CTTGACGATT GGGTGTTGTG TCGAATTTAC AACAAGAAAG GGAAGATTGA GAAATACAAC ACGGGGGCAG
CGAAATCGGA GACTGAGGTG GTTTATAATT TCGAACACGA GACGAAGCCG GTGATTGAGA AGCTTGGGAA CGAGCAATTG
TTTATGGATA GTTCAGATTC AATGCAGAGG TTGCAGAGTG AGTCGAGCGG TTCAGAGCAG GTGGTTTCGC CGGACGTGAG
GTGGGAGAGA GAGGTGCAGA GCCACCCGAA ATGGAATGAC ATAGGCCTAC AGCTTGAAAA CGCGTTTGAT TTTCAATACA
ATTACTTTGA CGGCAATAAC CTTTCGGTGG ATGATCCTTT TGGGAGTGTT GAGTACCAAA TGGGCCACGT CTCCCCCTTG
CAGGACGTGC TCATGGAAGC CCTATTGATG TGAAAACGAT ACCTTTTGGA CAAGGGGGCT TCATTATGTG CATTACATGG
GACCCTCTAC CCCATCATAT CTTCATTATT TTGTAAAGTC AGCATCGGTT TGCGATTGCA TTCACCTAAC TACTACTACT
GTTACATGTG CTGCCAGGCT TAGTGACGAA ATGAGCTGCA CGTGTAGTAA CTATTCTTGT TCTTTCTTCT AGAGAGGTCA
GGGAATTTTG AATTCGGCTG AAATGGGTAT TTGGATTAGA TGTGAAGAAA AAAAAAAATA AGGGAACTGT GTAAAAGAGA
GTAGGAGCAG AATGATCTCA ACAAGGTGTC GATTCATAGG ATTTATTGGA GGGTTAATGT GTAGCTGTAG GAACTCAACC
TGGAAAATTC TTGTTCTATG GTATTGGAGT ATGATTTTTT CAAATATTTG TAATTTACAA CTTCTACTTT TCAATTCGAA
GTAAACAGCT GAATGAAAAT TCTTCCATTC AAAGGATGGA AAAGTTGCTC TATGTATCTT CAGACTCTAT AATATGCTAG
TGTAAATTAC TTTATAATAA CAGAACAGAA ACGATGGTAT ATAATAAAAG AACTTGCAG

>Vigan.02G213200.01
CTCTATTAAA TTTGTCAAAT GGATTTGCCC TCCACCTCAC CAACCCACGT GTTACAACTC ACTCTCTTCC TTTTTATCCC
ATCGCACTAT AAAACCCACC TAGTCTCTTT TCTCATTCCT TTCAATCACA AACCAAAGCA GAGCCAACAA CATTCACCAA
CAACAAACAA CTACAACAAC ACACAAGCGA GAAGAGGAAA AGCAAATGAA GAGTGAATTA GAGTTGCCAC CAGGGTTCAG
GTTTCACCCC ACGGATGATG AGTTGGTGAA CCATTATCTT TGTAGGAAAT GCGCTGGTCA ACCAATTGCT GTTCCTATCA
TCAAAGAGGT CGATTTGTAC AAGTTTGATC CATGGCAGCT TCCAGAAATC GGATTTTACG GCGAGAAAGA ATGGTACTTT
TTTTCTCCTC GGGACCGCAA ATACCCCAAC GGCTCACGGC CGAATCGGGC CGCCGGAAGT GGGTACTGGA AGGCCACCGG
CGCCGATAAA CCGATCGGAA AACCGAAGGC GCTTGGGATA AAGAAAGCTC TGGTATTTTA CTCGGGAAAA GCCCCCAAAG
GAGAGAAAAC CAATTGGATC ATGCACGAAT ATCGGCTGGC CAATGTTGAC CGATCAGCCT CCAAGAAAAA TAACAACCTG
AGGCTTGACG ATTGGGTGTT GTGTCGAATT TACAACAAGA AAGGGAAGAT TGAGAAATAC AACACGGGGG CAGCGAAATC
GGAGACTGAG GTGGTTTATA ATTTCGAACA CGAGACGAAG CCGGTGATTG AGAAGCTTGG GAACGAGCAA TTGTTTATGG
ATAGTTCAGA TTCAATGCAG AGGTTGCAGA GTGAGTCGAG CGGTTCAGAG CAGGTGGTTT CGCCGGACGT GAGGTGGGAG
AGAGAGGTGC AGAGCCACCC GAAATGGAAT GACATAGGCC TACAGCTTGA AAACGCGTTT GATTTTCAAT ACAATTACTT
TGACGGCAAT AACCTTTCGG TGGATGATCC TTTTGGGAGT GTTGAGTACC AAATGGGCCA CGTCTCCCCC TTGCAGGACG
TGCTCATGGA AGCCCTATTG ATGTGAAAAC GATACCTTTT GGACAAGGGG GCTTCATTAT GTGCATTACA TGGGACCCTC
TACCCCATCA TATCTTCATT ATTTTGTAAA GTCAGCATCG GTTTGCGATT GCATTCACCT AACTACTACT ACTGTTACAT
GTGCTGCCAG GCTTAGTGAC GAAATGAGCT GCACGTGTAG TAACTATTCT TGTTCTTTCT TCTAGAGAGG TCAGGGAATT
TTGAATTCGG CTGAAATGGG TATTTGGATT AGATGTGAAG AAAAAAAAAA ATAAGGGAAC TGTGTAAAAG AGAGTAGGAG
CAGAATGATC TCAACAAGGT GTCGATTCAT AGGATTTATT GGAGGGTTAA TGTGTAGCTG TAGGAACTCA ACCTGGAAAA
TTCTTGTTCT ATGGTATTGG AGTATGATTT TTTCAAATAT TTGTAATTTA CAACTTCTAC TTTTCAATTC GAAGTAAACA
GCTGAATGAA AATTCTTCCA TTCAAAGGAT GGAAAAGTTG CTCTATGTAT CTTCAGACTC TATAATATGC TAGTGTAAAT
TACTTTATAA TAACAGAACA GAAACGATGG TATATAATAA AAGAACTTGC AG

>Vigan.02G213200.01
ATGAAGAGTG AATTAGAGTT GCCACCAGGG TTCAGGTTTC ACCCCACGGA TGATGAGTTG GTGAACCATT ATCTTTGTAG
GAAATGCGCT GGTCAACCAA TTGCTGTTCC TATCATCAAA GAGGTCGATT TGTACAAGTT TGATCCATGG CAGCTTCCAG
AAATCGGATT TTACGGCGAG AAAGAATGGT ACTTTTTTTC TCCTCGGGAC CGCAAATACC CCAACGGCTC ACGGCCGAAT
CGGGCCGCCG GAAGTGGGTA CTGGAAGGCC ACCGGCGCCG ATAAACCGAT CGGAAAACCG AAGGCGCTTG GGATAAAGAA
AGCTCTGGTA TTTTACTCGG GAAAAGCCCC CAAAGGAGAG AAAACCAATT GGATCATGCA CGAATATCGG CTGGCCAATG
TTGACCGATC AGCCTCCAAG AAAAATAACA ACCTGAGGCT TGACGATTGG GTGTTGTGTC GAATTTACAA CAAGAAAGGG
AAGATTGAGA AATACAACAC GGGGGCAGCG AAATCGGAGA CTGAGGTGGT TTATAATTTC GAACACGAGA CGAAGCCGGT
GATTGAGAAG CTTGGGAACG AGCAATTGTT TATGGATAGT TCAGATTCAA TGCAGAGGTT GCAGAGTGAG TCGAGCGGTT
CAGAGCAGGT GGTTTCGCCG GACGTGAGGT GGGAGAGAGA GGTGCAGAGC CACCCGAAAT GGAATGACAT AGGCCTACAG
CTTGAAAACG CGTTTGATTT TCAATACAAT TACTTTGACG GCAATAACCT TTCGGTGGAT GATCCTTTTG GGAGTGTTGA
GTACCAAATG GGCCACGTCT CCCCCTTGCA GGACGTGCTC ATGGAAGCCC TATTGATGTG A

>Vigan.02G213200.01
MKSELELPPG FRFHPTDDEL VNHYLCRKCA GQPIAVPIIK EVDLYKFDPW QLPEIGFYGE KEWYFFSPRD RKYPNGSRPN
RAAGSGYWKA TGADKPIGKP KALGIKKALV FYSGKAPKGE KTNWIMHEYR LANVDRSASK KNNNLRLDDW VLCRIYNKKG
KIEKYNTGAA KSETEVVYNF EHETKPVIEK LGNEQLFMDS SDSMQRLQSE SSGSEQVVSP DVRWEREVQS HPKWNDIGLQ
LENAFDFQYN YFDGNNLSVD DPFGSVEYQM GHVSPLQDVL MEALLM*