GBrowse Details

Vigan.02G206200.01

Basic Information:
Name: Vigan.02G206200.01
Multiple alignment
Variant Information
Position: Chr02:27944275..27947079 (+ strand)
Length: 2805
Functional Information:
Description: Similar to Ribosomal protein L17. [B9H473, Populus trichocarpa]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L17 (IPR000456)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.59,19.83,4.79,5.60,4.65,6.75,5.98 ,4.78
Arabidopsis thaliana homolog: AT5G09770.1
Automatic updates:
Name: NM_001253978 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L17-like (LOC100785280), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253978 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L17 (LOC100785280), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:27944275..27945427 (+ strand)
Length: 1153
Type: five_prime_UTR
Position: Chr02:27945428..27945483 (+ strand)
Length: 56
Type: CDS
Position: Chr02:27945582..27945636 (+ strand)
Length: 55
Type: CDS
Position: Chr02:27945712..27945762 (+ strand)
Length: 51
Type: CDS
Position: Chr02:27946346..27946437 (+ strand)
Length: 92
Type: CDS
Position: Chr02:27946518..27946595 (+ strand)
Length: 78
Type: CDS
Position: Chr02:27946818..27946965 (+ strand)
Length: 148
Type: CDS
Position: Chr02:27946966..27947079 (+ strand)
Length: 114
Type: three_prime_UTR

>Vigan.02G206200.01 class=Sequence position=Chr02:27944275..27947079 (+ strand)
GAGAAAGTAA AAATAGAAAA GTAAAAATCA AATCCCGCAG ATATTTGCCG AGGAAAGAGA AGCCAAGCGA AGCTCATTTT
CTTTCTCTGG CAGCTTAGAC ATAGCACAAT CACAAGCTCC ACTCTAGGGT TTCGCTCTTT ACTTTCTCTT CACCACTAAC
TCGTGAGTCT TCTCTCAACC TTACTATGCT TTTACCTTTC CGCTTCTTAT TTAGGGTTTA AATCCTCTCC TGTAATTTCA
ATTTGGAACT TGCTTGAAGC CTAATTTATG TTGTTTTTCT CTGTTTTTCG AGCCTCAGTG CTTGAATTTG AATGTCGGAT
ATTCGACCTT ATTTTTCTTT TCTTTTTTAT GTACGTTAGG ATCAATAGTG TTATCAATGT CGTTTACGCG AAAACTACCG
GTTAGTAAAA CATAAACGGA AGCTAGAAAA TGGAATTGTA CTTGCGTAGC CTTTATTTAA TATGAAGTAT GATACCAGCC
AGATAAATAA CTATTGCCAG TTAGGGAAAA AACACTAGGA AGGAGAGAAA ATACAGAGGA GAGTACTAAT GATAACTAGG
CTCTTCTTCT CGCTCTTTCA ATACTATTAA TCATTCTTCT AGTGTTGGAG TAAGTAACTT CCTCATGTGG TTATTTTGCG
CTAGCCTCTA TGGTCACTAT CTTTGTGAGA CCATATGACA GTATCCTAGT TAGCGATTCA CCCTTTGGCA TTGAAAGAAT
TTTGGAGACA TGAGAATGGG GAATCATTAT AGTTGCCGTG ACAGTGTATT CTTAAATCTT AATAGGTTAT CTTTTCTTAG
TGAGGAATCA CTAAAGCTAT GCTTTGGTTT AGACTAAAAA TGCATAATAA AGGCCTTTTT ATCATTGCAT CTTCTTGTGT
TGGACTATCT GCTTGGTTGT CTCTGTTCCA TTTTATAATG AGCATTCTAC ATGTTGTGGA ACCATTTCAT CTTTATTTCG
TATGGAAATT AATTGTGTGG AAATTAATTT CGTATGCTAC ACTTGCCTAA AATATGTTTG ACTGATGTTA TTGGAAAGAA
ACTTGTTTGG TCAATCCTAC ATGTTGTACC ATTACATCTT TAGATCCTTT TTCTATCCCC GAAGCAGGAT TCTTTTTTAG
GCGTTCACCC ATAGAATTAA CTGGATTACG AAAATGACAA AATTCAGGAA GCTGGGTCGA CCCACCGGTC ACCGGATGTC
CATGCTCAGG TTAATTAGTT TGTTAGTTAA CACTTTCAAT TCAGTTCATT CTTTGATTTA TTGGTTTGCA AAGATGCTGA
GTCCTGGATG GCTTTCCATT TATATAGAAC CATGGTTTCG CAGTTGGTGA AACACGAGCG TATCGAAACT ACTGTGGCCA
AGGTACCATT TCAAGCGACA TTGTTTACCA TTTTCTTCAA TATCACATTT TATTTCATGT AATTTGGTTT TGTTCAGGCC
AAAGAGATCA GACGACTCGC CGATAATATG GTTCAGCTTG GAAAGGAGGT TTGTGTGCTA TTCATCATCG ATTATTTCTG
ATTCATTTTG GGTTTGGTTA ATTTAAATTT GAGCTGTAAC TTTTGTGTAG CTTTTGGTTG ATCTGTCTTC GAACATTACT
TTAAAAACAG GGATGAATTT ATTAAGGGGT TGGTTGATGC GTAATATCTT TTGATTGTTC AATTTGTAGT TGGTGTTCCA
ATTTGTACTT GGTGTTCTTA CCTCCTATGC ATTTCAAAAT TTATTGGAGG TCTATATTTT CTAGTGGCAA CTGTTGATAT
CCCACTTAGT GGCTTTTTAA TTTTAGGCCA AGTTAGGTTG TCTCAGTTTT TCTTGTTTGC TCCTTTTCCA CCTCAATCAG
GGCATATGGC AAGTTAGGGT TTGGGGAAGG AATTTCGTAT TGTGAACTGT GAAGTGAATT TGTCCCTATA TGATGATACA
CGTAAGACAT AATTGTCTTC TCTCTTCTTT GTAAGAATTA TGGGTCATTC TATGGTGGGG AATAAACTCT TTGTCAGGGT
AATCATTTGA CTTTTTTCAT TTAGCTTGAT TGCTGGGTTT GGCCTAAAGT TTATATTATA AATCATTTTA GGGATCCCAA
TGTGCTGCAA GTCGTGCTGC TAGTTTTGTG CGAGGAGATG ATGTCCTTCA CAAGCTGTTT ACAGAACTGG CTTATCGGTA
CAAGTAAGGA ATAAACCTGA TATAGTTTCA GTTGTGATTT ATGATAGATA GTTGTAACAC TGACCAGAGA TTATGTTGTG
CAGGGATAGA GCTGGAGGAT ACACCAGATT GCTTCGGACC CGAATTCGAG TGGGTGATGC TGCACCAATG GCCTATATTG
AGTGAGTACA GTTTTATATT CTATATTTAC ACTCATTTTA GGTTTATTTG GGTAGCCCCG CTTAATTTCA CCGAAAAAGT
ATTTATTTGC TCACTGTTCA TGCTGTTGCC TGTCTGCCAT ACGGTGTTGA CATAGTTCAA TCCTTTAAAT CTTCCAAGTT
GCTTAAGAAT TAGGAGGTTG AGAATGAACT TTATATTCAA AAACATTGTA TGCTTTGAAA CAGGTTTATT GACAGAGAAA
ATGAGCTTAG GCAGGCAAAG CCACCAACTC CTCAGCCGCC ACAGAGAGCA CCCCTAGACC CCTGGACACG TTCTCGTCTC
AGTAGACAAT TTGCTCCTCC TAAAGAGGAA AAATCTGGAT CTGATTTGTG ATTCTATCGA TAGTAATGCG GATAAGCCGA
TACTATGTTT TTCCCAACGT AGCATGGCAT ATCATAATTT TGGTCTTGCT TATTTAATCA ATCTTCAAAT GGTTTGAAAA
AAAAA

>Vigan.02G206200.01
GAGAAAGTAA AAATAGAAAA GTAAAAATCA AATCCCGCAG ATATTTGCCG AGGAAAGAGA AGCCAAGCGA AGCTCATTTT
CTTTCTCTGG CAGCTTAGAC ATAGCACAAT CACAAGCTCC ACTCTAGGGT TTCGCTCTTT ACTTTCTCTT CACCACTAAC
TCGTGAGTCT TCTCTCAACC TTACTATGCT TTTACCTTTC CGCTTCTTAT TTAGGGTTTA AATCCTCTCC TGTAATTTCA
ATTTGGAACT TGCTTGAAGC CTAATTTATG TTGTTTTTCT CTGTTTTTCG AGCCTCAGTG CTTGAATTTG AATGTCGGAT
ATTCGACCTT ATTTTTCTTT TCTTTTTTAT GTACGTTAGG ATCAATAGTG TTATCAATGT CGTTTACGCG AAAACTACCG
GTTAGTAAAA CATAAACGGA AGCTAGAAAA TGGAATTGTA CTTGCGTAGC CTTTATTTAA TATGAAGTAT GATACCAGCC
AGATAAATAA CTATTGCCAG TTAGGGAAAA AACACTAGGA AGGAGAGAAA ATACAGAGGA GAGTACTAAT GATAACTAGG
CTCTTCTTCT CGCTCTTTCA ATACTATTAA TCATTCTTCT AGTGTTGGAG TAAGTAACTT CCTCATGTGG TTATTTTGCG
CTAGCCTCTA TGGTCACTAT CTTTGTGAGA CCATATGACA GTATCCTAGT TAGCGATTCA CCCTTTGGCA TTGAAAGAAT
TTTGGAGACA TGAGAATGGG GAATCATTAT AGTTGCCGTG ACAGTGTATT CTTAAATCTT AATAGGTTAT CTTTTCTTAG
TGAGGAATCA CTAAAGCTAT GCTTTGGTTT AGACTAAAAA TGCATAATAA AGGCCTTTTT ATCATTGCAT CTTCTTGTGT
TGGACTATCT GCTTGGTTGT CTCTGTTCCA TTTTATAATG AGCATTCTAC ATGTTGTGGA ACCATTTCAT CTTTATTTCG
TATGGAAATT AATTGTGTGG AAATTAATTT CGTATGCTAC ACTTGCCTAA AATATGTTTG ACTGATGTTA TTGGAAAGAA
ACTTGTTTGG TCAATCCTAC ATGTTGTACC ATTACATCTT TAGATCCTTT TTCTATCCCC GAAGCAGGAT TCTTTTTTAG
GCGTTCACCC ATAGAATTAA CTGGATTACG AAAATGACAA AATTCAGGAA GCTGGGTCGA CCCACCGGTC ACCGGATGTC
CATGCTCAGA ACCATGGTTT CGCAGTTGGT GAAACACGAG CGTATCGAAA CTACTGTGGC CAAGGCCAAA GAGATCAGAC
GACTCGCCGA TAATATGGTT CAGCTTGGAA AGGAGGGATC CCAATGTGCT GCAAGTCGTG CTGCTAGTTT TGTGCGAGGA
GATGATGTCC TTCACAAGCT GTTTACAGAA CTGGCTTATC GGTACAAGGA TAGAGCTGGA GGATACACCA GATTGCTTCG
GACCCGAATT CGAGTGGGTG ATGCTGCACC AATGGCCTAT ATTGAGTTTA TTGACAGAGA AAATGAGCTT AGGCAGGCAA
AGCCACCAAC TCCTCAGCCG CCACAGAGAG CACCCCTAGA CCCCTGGACA CGTTCTCGTC TCAGTAGACA ATTTGCTCCT
CCTAAAGAGG AAAAATCTGG ATCTGATTTG TGATTCTATC GATAGTAATG CGGATAAGCC GATACTATGT TTTTCCCAAC
GTAGCATGGC ATATCATAAT TTTGGTCTTG CTTATTTAAT CAATCTTCAA ATGGTTTGAA AAAAAAA

>Vigan.02G206200.01
ATGACAAAAT TCAGGAAGCT GGGTCGACCC ACCGGTCACC GGATGTCCAT GCTCAGAACC ATGGTTTCGC AGTTGGTGAA
ACACGAGCGT ATCGAAACTA CTGTGGCCAA GGCCAAAGAG ATCAGACGAC TCGCCGATAA TATGGTTCAG CTTGGAAAGG
AGGGATCCCA ATGTGCTGCA AGTCGTGCTG CTAGTTTTGT GCGAGGAGAT GATGTCCTTC ACAAGCTGTT TACAGAACTG
GCTTATCGGT ACAAGGATAG AGCTGGAGGA TACACCAGAT TGCTTCGGAC CCGAATTCGA GTGGGTGATG CTGCACCAAT
GGCCTATATT GAGTTTATTG ACAGAGAAAA TGAGCTTAGG CAGGCAAAGC CACCAACTCC TCAGCCGCCA CAGAGAGCAC
CCCTAGACCC CTGGACACGT TCTCGTCTCA GTAGACAATT TGCTCCTCCT AAAGAGGAAA AATCTGGATC TGATTTGTGA

>Vigan.02G206200.01
MTKFRKLGRP TGHRMSMLRT MVSQLVKHER IETTVAKAKE IRRLADNMVQ LGKEGSQCAA SRAASFVRGD DVLHKLFTEL
AYRYKDRAGG YTRLLRTRIR VGDAAPMAYI EFIDRENELR QAKPPTPQPP QRAPLDPWTR SRLSRQFAPP KEEKSGSDL*