GBrowse Details

Vigan.02G197400.01

Basic Information:
Name: Vigan.02G197400.01
Multiple alignment
Variant Information
Position: Chr02:25675123..25676553 (+ strand)
Length: 1431
Functional Information:
Description: Similar to Kunitz trypsin inhibitor protein. [Q9FUP3, Phaseolus coccineus]
GO: Biological Process: defense response (GO:0006952)
InterPro: Knottin, scorpion toxin-like (IPR003614)
Gamma thionin (IPR008176)
Gamma Purothionin (IPR008177)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.67,41.03,97.59,15.92,21.96,411.83, 0.88,29.22
Arabidopsis thaliana homolog: AT5G63660.1
Automatic updates:
Name: NM_001349731 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max defensin-like protein (LOC547938), transcript variant 2, mRNA.
PubMed ID: 21667246 NCBI(pubmed)
8278516 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:25675123..25675218 (+ strand)
Length: 96
Type: five_prime_UTR
Position: Chr02:25675219..25675279 (+ strand)
Length: 61
Type: CDS
Position: Chr02:25675395..25675561 (+ strand)
Length: 167
Type: CDS
Position: Chr02:25675562..25676553 (+ strand)
Length: 992
Type: three_prime_UTR

>Vigan.02G197400.01 class=Sequence position=Chr02:25675123..25676553 (+ strand)
GCGCTATTCA GTTCACTATA TAAGGACACT GGCTTCACCC ATTATCATTA CTGCATTCAT ACACTGCCCC AGAAAGAGTA
GGTTAACTTG GTGAACATGG AGATGAGGAA ATCATGTGGG TTTTTCTTCT TGCTCCTTCT TCTGGTCTTT GCTTCCCGTA
AGATTAATCT CCTTTTGTCT TTTATCATTA CATAATGTCA CTTGTATAAC AGGGTTTTAG TGTAATGTGT GTTTGATGAA
AGTACTTATT TGTATTCTGT TTGTGGTGGC AGAGGTGGTG GTGCAGACGG AGGGAAGAGT GTGCGAGTCA CAGAGCCACG
GGTTCAAGGG TGCGTGTACT GGAGACCATA ATTGTGCTCT GGTATGCAGG AATGAAGGTT TCTCCGGTGG GAACTGCAGA
GGCTTCCGCC GACGATGCTT CTGCACCAAG ATTTGCTGAG TGAACATATC AAACATGCAT CTCACTATCA AATAAATCTC
ATGCATGTCT TTCACTGTTA TCAATTTGGA AATGGGATAT AGCTAGCTGC CACCACCTAT TTCCACTATT TTCTACTTCG
ACAGCATTTG CTCATGTGTT TGTTCAGCCT TTATTATATT TATAATTAAT AATGCTTCTT GGTTACCTCC TTGTTGCATT
ACATATGTCC CCATCATTCT TCCTCCATCC TCTGTCATTT ATTTTATTTT TTTGGTTTTT TATGATAATA GGTAAACCTC
CCTCTTTTAT TACCAGAATA TAATTTTTTT TTTAAAATAC GAAAATAAGC AAGTTCTGCG GTATTCACAC CACTATAATT
TCGAATAATT TCGAATTTCG TTTTATCAAT CAGTGTAATC GAGTAGAAAA ATCGTTTTGC AAAACACAGA AGTGTAAAAA
GCAGAATTTT AATTCTTTCT CCACTATAAA TATTTCCAGA GTGATTCTCC CTCCACACGG TCTTCCTCCT GCGCTTTCAA
AACATATTTT AATTCTAATG ATATCTTTTG TCTTTCAATG ACGTCCACAG GTGCACAGAA AAACTGTATT TCGAACTGCG
ACAAAAACAA ATTGCTTTTC GATCTGCGGA AAGCACAAAC CTATCCACAC AGTTCAAAAT GTGTAAAGCA CGGAGATCCC
GCTGCAGATG TTCAAAATGC GTAAAGCACG GAGATCCCAC TGCATTTCGA TCTGCAGCTG AGACAAACCA CACTTCGAAG
TTTAGGGTTT AGTTTTAAAA CTTTTTTATT AGGTTAGTAT ATATTTATTT TATTAGGTTT TATTTTTATT AAGTTAGTAT
AATAAATTTA ATTTTTTATG TTAGTTGTTA AATAAAATGT TTTGTTTTAA TATATTTTGA ATTATTTTAT TTGTTTGTTA
AATTTTGTTG AATTTGTTAT TTTTCAATAT ATTATTATTT TCTTAATATA TTATTTATTA TGTATTTAAT T

>Vigan.02G197400.01
GCGCTATTCA GTTCACTATA TAAGGACACT GGCTTCACCC ATTATCATTA CTGCATTCAT ACACTGCCCC AGAAAGAGTA
GGTTAACTTG GTGAACATGG AGATGAGGAA ATCATGTGGG TTTTTCTTCT TGCTCCTTCT TCTGGTCTTT GCTTCCCAGG
TGGTGGTGCA GACGGAGGGA AGAGTGTGCG AGTCACAGAG CCACGGGTTC AAGGGTGCGT GTACTGGAGA CCATAATTGT
GCTCTGGTAT GCAGGAATGA AGGTTTCTCC GGTGGGAACT GCAGAGGCTT CCGCCGACGA TGCTTCTGCA CCAAGATTTG
CTGAGTGAAC ATATCAAACA TGCATCTCAC TATCAAATAA ATCTCATGCA TGTCTTTCAC TGTTATCAAT TTGGAAATGG
GATATAGCTA GCTGCCACCA CCTATTTCCA CTATTTTCTA CTTCGACAGC ATTTGCTCAT GTGTTTGTTC AGCCTTTATT
ATATTTATAA TTAATAATGC TTCTTGGTTA CCTCCTTGTT GCATTACATA TGTCCCCATC ATTCTTCCTC CATCCTCTGT
CATTTATTTT ATTTTTTTGG TTTTTTATGA TAATAGGTAA ACCTCCCTCT TTTATTACCA GAATATAATT TTTTTTTTAA
AATACGAAAA TAAGCAAGTT CTGCGGTATT CACACCACTA TAATTTCGAA TAATTTCGAA TTTCGTTTTA TCAATCAGTG
TAATCGAGTA GAAAAATCGT TTTGCAAAAC ACAGAAGTGT AAAAAGCAGA ATTTTAATTC TTTCTCCACT ATAAATATTT
CCAGAGTGAT TCTCCCTCCA CACGGTCTTC CTCCTGCGCT TTCAAAACAT ATTTTAATTC TAATGATATC TTTTGTCTTT
CAATGACGTC CACAGGTGCA CAGAAAAACT GTATTTCGAA CTGCGACAAA AACAAATTGC TTTTCGATCT GCGGAAAGCA
CAAACCTATC CACACAGTTC AAAATGTGTA AAGCACGGAG ATCCCGCTGC AGATGTTCAA AATGCGTAAA GCACGGAGAT
CCCACTGCAT TTCGATCTGC AGCTGAGACA AACCACACTT CGAAGTTTAG GGTTTAGTTT TAAAACTTTT TTATTAGGTT
AGTATATATT TATTTTATTA GGTTTTATTT TTATTAAGTT AGTATAATAA ATTTAATTTT TTATGTTAGT TGTTAAATAA
AATGTTTTGT TTTAATATAT TTTGAATTAT TTTATTTGTT TGTTAAATTT TGTTGAATTT GTTATTTTTC AATATATTAT
TATTTTCTTA ATATATTATT TATTATGTAT TTAATT

>Vigan.02G197400.01
ATGGAGATGA GGAAATCATG TGGGTTTTTC TTCTTGCTCC TTCTTCTGGT CTTTGCTTCC CAGGTGGTGG TGCAGACGGA
GGGAAGAGTG TGCGAGTCAC AGAGCCACGG GTTCAAGGGT GCGTGTACTG GAGACCATAA TTGTGCTCTG GTATGCAGGA
ATGAAGGTTT CTCCGGTGGG AACTGCAGAG GCTTCCGCCG ACGATGCTTC TGCACCAAGA TTTGCTGA

>Vigan.02G197400.01
MEMRKSCGFF FLLLLLVFAS QVVVQTEGRV CESQSHGFKG ACTGDHNCAL VCRNEGFSGG NCRGFRRRCF CTKIC*