GBrowse Details

Vigan.02G166300.01

Basic Information:
Name: Vigan.02G166300.01
Multiple alignment
Variant Information
Position: Chr02:16367133..16369441 (+ strand)
Length: 2309
Functional Information:
Description: Similar to RNA-binding protein 24-A. [XP_003526753.1, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.91,1.93,4.01,6.00,13.14,10.57,11. 95,9.95
Automatic updates:
Name: NM_001254141 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100788634 (LOC100788634), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254141 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA-binding protein-like (LOC100788634), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:16367133..16367548 (+ strand)
Length: 416
Type: five_prime_UTR
Position: Chr02:16367549..16367755 (+ strand)
Length: 207
Type: CDS
Position: Chr02:16367844..16367970 (+ strand)
Length: 127
Type: CDS
Position: Chr02:16368124..16368238 (+ strand)
Length: 115
Type: CDS
Position: Chr02:16368327..16368366 (+ strand)
Length: 40
Type: CDS
Position: Chr02:16368557..16368752 (+ strand)
Length: 196
Type: CDS
Position: Chr02:16368850..16368923 (+ strand)
Length: 74
Type: CDS
Position: Chr02:16368924..16369441 (+ strand)
Length: 518
Type: three_prime_UTR

>Vigan.02G166300.01 class=Sequence position=Chr02:16367133..16369441 (+ strand)
TAAAAATATT GCCCGAATAA ATAATTGGAT TTTGTAGTGT AATTTCCTTT TTCTTTTCTT TCCCTGTTTC CCCGTTTCCC
CTGTTTCGCT CTGTTTTTAT TTCCTATATT CTTCGACTGT TGATTAACTT TCTTGTTAAG GGAATCTTCG TCGTGGAATC
TGAGGAAACG TTTGTGTACG AAAATCATGG ATTTTTTTCT CTCCATAATA AACGAGAATC ACTAGAGCAC CAGTTGGTGG
AAGATTTTCT CAAGCATTGA TTTGATTGAT TGTTCACTGT TCATGCTAAA CAACCAAACA AACGGCTACT CTGACTTTTT
GATCCTGTTT CTAATCTTGT TTCTGGGATC CTGTCCGTTT TTTACACTGT CTTTTAAGCC TTCGTTTCAG GGTTTAGTAA
ACTGAATTGA ATTCAGATGT CACAGCCAAG GCAAAACAAG ATGATGAGTC CAAACCTTGG AAAACAAGTT GGTGACACAA
CCTATACTAA GATCTTTGTT GGAGGATTGG CTTGGGAGAC AAAGAGAGAC TCTCTGAAAC GCTATTTTGA TCAGTTTGGG
GAGATCTTAG AGGCGGTTGT CATCACCGAT AGAATCACTG GAAGATCAAA AGGATATGGC TTTGTAAAAC CCACTTATCT
ACTCTTTCAG CACTACCTGT TTTTCCTCTT GATTCCTTTC ACTCTAATAT CTTTTGCTTT CTGTTTCTTA GGTCACCTTT
AGGGACCCAA ATTCTGCATC AAGGGCTTGT CTCGATCCCT ATCCTGTGAT TGATGGAAGG AGAGCTAATT GTAACCTTGC
AGCCCTTGGT GCCCAGAAAT TTGATCCATC AACAACAGGT TAGGTCTTTC ATTTTTTTTT AAGTCCTAAA TTTACTTGAT
TATGCAAATT TGATCAATAT TCCTTGCATG CAAACCATCC TCACGGTGGC TAATAAAGTT TCAAAATTTT AAACCTCCTC
TGTGGCATAC TCACTCTTTA AAATGTTTCA GGAAGACAAA AATTCAGTAG CCCTTCATGG AATATGGCAC CAGTCCCATT
GCAAGGCACC TCCACATATT ACAATCAACA CATACCTCAC TACCCAATTT CCTATCCAAC CTACAGGTGT GCGATTCAAA
CGTGTGAGAG TGAGTTGTTT TTATACTTGC AAATTTATCG TCATTCTAAG TGACCATTTT GCTCCAACAT TCAGGTATCC
TGGTTTTACT CACCCACAAG ACTTGTATGA AATGGTTAGT TTTCTCATAA AGTAGCTTTT CTTTTCAACC AACTTTGAAT
TGCTAGAAAG CTATATGTCA CCAAACTTGT TCACGATCGT TACAATTCAT ATGGGTAGAG ATATTATAGT ATACAAGTAG
GGATTAAACT GTGTCCACTA TTCTCAGAAT TTTTTTATCA GAGTTATGTT GTTGTTCTAT ACAGAACTAC AATAATGCAT
ATGGTGGACA GCAGTTTCCC CTCCGCTGGT ATCCAGCATA TTACCAGCCC TTTTATGGCC TTGGCAGACA GATTATTCCA
ACAACCTATG TGAAAAAGGT CATACCAGAC ACGTCTCAGG AGCTCACAGT TGTTGGTTTT TCAGAGCCTA TTTCATCCTC
TCCTTCAATT CCCACCACTG GTTCAGTATC TGAACTCTAA ACAATGCAAC AATTTTTTTG TTTCGACTAA AATTTCCTTA
ATCTTGACTA ACTTTAAGGT TGTTGTTTAT TGAAAAGGAT TAGTCACCGG AACAGTACCT GCGACAGAAG TGGTAGAATC
CCCTCAAGAA CAGACATCTT CAACTACTTA AAGCTATGAT GAGGAGATTC CCTCAATAGA CTAGAATAGA GAAAGTAAAA
AAGAAAAAAT GACACTGCTT AATAAACCAG GATGAGGTGG TCTAGCAAGG AACTAAATGA AGCAATAACG TATTGAGATT
TTCCATCCAC GAAACAGATG ATCTTGCAGA CCAGACAGTA ATGAAATAGT CCTGGTTTTG TTCATTGTCT TCAGAAATTT
TTACTTTTCA GAATTCTGGT GTACATGATT CTTTAGTTTT CCTTTATTTG TTTTTTTTTC GTTAATTTTC TTTTTTAACA
TGGGATTCCT ACTACTTTAT AGTTAGAAAA AAAAAATACG TTTTTTACTA TTTCATTATT CTTACACTTA CACATATACT
TTGCATTCCT ATGTGGTGTT AGCCTATCCA AAATTGCCAG AGTAAGATCA CACCAATTGT TTTCGTTCTT AAAGATTGAG
AATGTATCCT GAAAGTCCAA CAAATGTATA TCATACACTC AAATTCGGTG TACTATTGTA AAGTATCGT

>Vigan.02G166300.01
TAAAAATATT GCCCGAATAA ATAATTGGAT TTTGTAGTGT AATTTCCTTT TTCTTTTCTT TCCCTGTTTC CCCGTTTCCC
CTGTTTCGCT CTGTTTTTAT TTCCTATATT CTTCGACTGT TGATTAACTT TCTTGTTAAG GGAATCTTCG TCGTGGAATC
TGAGGAAACG TTTGTGTACG AAAATCATGG ATTTTTTTCT CTCCATAATA AACGAGAATC ACTAGAGCAC CAGTTGGTGG
AAGATTTTCT CAAGCATTGA TTTGATTGAT TGTTCACTGT TCATGCTAAA CAACCAAACA AACGGCTACT CTGACTTTTT
GATCCTGTTT CTAATCTTGT TTCTGGGATC CTGTCCGTTT TTTACACTGT CTTTTAAGCC TTCGTTTCAG GGTTTAGTAA
ACTGAATTGA ATTCAGATGT CACAGCCAAG GCAAAACAAG ATGATGAGTC CAAACCTTGG AAAACAAGTT GGTGACACAA
CCTATACTAA GATCTTTGTT GGAGGATTGG CTTGGGAGAC AAAGAGAGAC TCTCTGAAAC GCTATTTTGA TCAGTTTGGG
GAGATCTTAG AGGCGGTTGT CATCACCGAT AGAATCACTG GAAGATCAAA AGGATATGGC TTTGTCACCT TTAGGGACCC
AAATTCTGCA TCAAGGGCTT GTCTCGATCC CTATCCTGTG ATTGATGGAA GGAGAGCTAA TTGTAACCTT GCAGCCCTTG
GTGCCCAGAA ATTTGATCCA TCAACAACAG GAAGACAAAA ATTCAGTAGC CCTTCATGGA ATATGGCACC AGTCCCATTG
CAAGGCACCT CCACATATTA CAATCAACAC ATACCTCACT ACCCAATTTC CTATCCAACC TACAGGTATC CTGGTTTTAC
TCACCCACAA GACTTGTATG AAATGAACTA CAATAATGCA TATGGTGGAC AGCAGTTTCC CCTCCGCTGG TATCCAGCAT
ATTACCAGCC CTTTTATGGC CTTGGCAGAC AGATTATTCC AACAACCTAT GTGAAAAAGG TCATACCAGA CACGTCTCAG
GAGCTCACAG TTGTTGGTTT TTCAGAGCCT ATTTCATCCT CTCCTTCAAT TCCCACCACT GGATTAGTCA CCGGAACAGT
ACCTGCGACA GAAGTGGTAG AATCCCCTCA AGAACAGACA TCTTCAACTA CTTAAAGCTA TGATGAGGAG ATTCCCTCAA
TAGACTAGAA TAGAGAAAGT AAAAAAGAAA AAATGACACT GCTTAATAAA CCAGGATGAG GTGGTCTAGC AAGGAACTAA
ATGAAGCAAT AACGTATTGA GATTTTCCAT CCACGAAACA GATGATCTTG CAGACCAGAC AGTAATGAAA TAGTCCTGGT
TTTGTTCATT GTCTTCAGAA ATTTTTACTT TTCAGAATTC TGGTGTACAT GATTCTTTAG TTTTCCTTTA TTTGTTTTTT
TTTCGTTAAT TTTCTTTTTT AACATGGGAT TCCTACTACT TTATAGTTAG AAAAAAAAAA TACGTTTTTT ACTATTTCAT
TATTCTTACA CTTACACATA TACTTTGCAT TCCTATGTGG TGTTAGCCTA TCCAAAATTG CCAGAGTAAG ATCACACCAA
TTGTTTTCGT TCTTAAAGAT TGAGAATGTA TCCTGAAAGT CCAACAAATG TATATCATAC ACTCAAATTC GGTGTACTAT
TGTAAAGTAT CGT

>Vigan.02G166300.01
ATGTCACAGC CAAGGCAAAA CAAGATGATG AGTCCAAACC TTGGAAAACA AGTTGGTGAC ACAACCTATA CTAAGATCTT
TGTTGGAGGA TTGGCTTGGG AGACAAAGAG AGACTCTCTG AAACGCTATT TTGATCAGTT TGGGGAGATC TTAGAGGCGG
TTGTCATCAC CGATAGAATC ACTGGAAGAT CAAAAGGATA TGGCTTTGTC ACCTTTAGGG ACCCAAATTC TGCATCAAGG
GCTTGTCTCG ATCCCTATCC TGTGATTGAT GGAAGGAGAG CTAATTGTAA CCTTGCAGCC CTTGGTGCCC AGAAATTTGA
TCCATCAACA ACAGGAAGAC AAAAATTCAG TAGCCCTTCA TGGAATATGG CACCAGTCCC ATTGCAAGGC ACCTCCACAT
ATTACAATCA ACACATACCT CACTACCCAA TTTCCTATCC AACCTACAGG TATCCTGGTT TTACTCACCC ACAAGACTTG
TATGAAATGA ACTACAATAA TGCATATGGT GGACAGCAGT TTCCCCTCCG CTGGTATCCA GCATATTACC AGCCCTTTTA
TGGCCTTGGC AGACAGATTA TTCCAACAAC CTATGTGAAA AAGGTCATAC CAGACACGTC TCAGGAGCTC ACAGTTGTTG
GTTTTTCAGA GCCTATTTCA TCCTCTCCTT CAATTCCCAC CACTGGATTA GTCACCGGAA CAGTACCTGC GACAGAAGTG
GTAGAATCCC CTCAAGAACA GACATCTTCA ACTACTTAA

>Vigan.02G166300.01
MSQPRQNKMM SPNLGKQVGD TTYTKIFVGG LAWETKRDSL KRYFDQFGEI LEAVVITDRI TGRSKGYGFV TFRDPNSASR
ACLDPYPVID GRRANCNLAA LGAQKFDPST TGRQKFSSPS WNMAPVPLQG TSTYYNQHIP HYPISYPTYR YPGFTHPQDL
YEMNYNNAYG GQQFPLRWYP AYYQPFYGLG RQIIPTTYVK KVIPDTSQEL TVVGFSEPIS SSPSIPTTGL VTGTVPATEV
VESPQEQTSS TT*