GBrowse Details

Vigan.02G162800.01

Basic Information:
Name: Vigan.02G162800.01
Multiple alignment
Variant Information
Position: Chr02:15746690..15749670 (+ strand)
Length: 2981
Functional Information:
Description: Similar to Uncharacterized protein. [I3SL06, Medicago truncatula]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: F-box domain (IPR001810)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.91,4.69,13.00,24.61,14.43,7.43,20 .67,12.03
Automatic updates:
Name: NM_001249064 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500296 (LOC100500296), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:15746690..15746895 (+ strand)
Length: 206
Type: five_prime_UTR
Position: Chr02:15746896..15746998 (+ strand)
Length: 103
Type: CDS
Position: Chr02:15748174..15748333 (+ strand)
Length: 160
Type: CDS
Position: Chr02:15749186..15749435 (+ strand)
Length: 250
Type: CDS
Position: Chr02:15749436..15749670 (+ strand)
Length: 235
Type: three_prime_UTR

>Vigan.02G162800.01 class=Sequence position=Chr02:15746690..15749670 (+ strand)
CCAACATATA CCTACGCGCG AAAATAATGT AATAATAATA TTATATTATA AAATAACCAA AGCTGTTGTG GATTCTTGTA
TTCCTCCTAC TAGAAGCAAC TAACAAAAAA CAACAAAAAT GAGTGTTTTG TTAGTATTAT GATTGCACAG ACAGAATCCA
AGGAAACGAA ACTCGTGAGT GTTATTTGGA AGAATTATGT GAGTTTATGA TTATTTTCAA GTTGTCGAAA ATGGAGAGGT
TGCCTGTGGA AATATGTACG AAGATATTCG GTCTCTTGGA TTACTACCAT CTTTCTGTTG CTCAACAAGG TCAGCCTCAC
CCACTCACTG TTTTTTCATT TTTACGTTCT TATCTCTTTG CAAAAGTTAT TTTTTTTTTC CAATCCAATT GGTGTTGCAA
TTGATCTCCA AGTTTCAAAA CAGCAGTGTC TTCCATTTTA TCTGAATTGA CTTTCTTCAA TTCGTCTGAT TCAATTTTCA
TATTGATTGG CTTGGATAAT CTGTTATGTT TTCCACCGAA TTGGATCTGA GATTGAAGTG ATCATGAGAT GAATATGATC
CCCTAACTTC GGTGGATTTG TATGTTCAGT TTTCCCTGAA TCAGGTCAAC TACTGGCTCT TCCTTTCTTT AATGTTTGAA
TTGAGGACCT TTTCCATCAG AAACAAAAGG TGGAAGGCAA CTCAGTGACT ATTGCAGATC ATATCAAAAT AAAATCAGGA
AAATAATTTC GTTTTGTGTA GTTTCATTTA GGGAAAATAA CCAATAAAGG CTGCAACCTT TGTCACTTGT TGCTCAGCCT
GCAACCAGTA ATCTTATATT AGTTACCTGG TAAAGGTTCC TGAAGAACAT GAGTTTATAG ATACCTCCAA TTGATAAGAG
GCATTCAGAG TGGTACCAAA AGCAAATCTG TGAGAGCCTG ACCCAAAACT GACAATATCT TATCAGTGAG AATCTATGTG
TATGTGTGTT GTCTCTCTAT ACAAATGATA TCAGAGTCCA TGGTTCCTCC ATGATCAGGT GGCCGGATCT ATGTGTATGT
GTGTGTGAAA CTTCCCTACA CTTTGAAACA GTGAGATATG TTATTTGTGT TCCCTTGGCC GTGTTCTAAC AGTGACCATA
CTTTTCAAGA AACATAAATC ATTTACACAG CTCCCTTCGA CAACATCTGG AGCTTGGCCA AATTTTGCCA CTTGAAATTG
TCGTTTTGAT AAGTGATAAA AAGATAATTT GATTTTAAGC CTCACCAAAC ATTTGATGCC TACCACTTAT TGCACAAATA
CAATTGACTC CACTCAAAAG TTTTTGGCAT AGGCTCATCA CAAAAACATT GTGGAGTAGG GAAGATGTGT GGCTTCCTAA
TGCTGTTTAA ATTTCCAGAT AATACAAGTT TTAATTAGTT TAAACTTGTT AAAGTTCTTA ATTGAGAATT ATATTAGCTT
GTTTGAATAA GGGTTGAACT AAACAAGTTG CAGCACTTGT GCAGTGTGTA GGAAGTGGAA GCTGGTGGGC TCAGACAATG
ATCTATGGTG TAACCTTTTT AGAGAGAGAT GGGGAGAAGA TCATTCTGCT TTTTATGCTC CTATTGGCTC AAAATCATGG
AAAGATGTAT ATGAGGTGCA AGATCGTTGT GATCGAATTG GAGTGTGAGT TTTCTAATTT TTCATCTTTT GATGGTCAGA
GGAGCTTTTG TTTTCTCCTT GCTTAATCAC ATGCATTATA ATCTTTTCAA CATTAACACT GCTAATAACA TGTTTTGAAA
TGCTAATTGA TTTGATTGGG AAACAGATAA ATCGTTCTCG ATGAATGGTT TTAAACCACA AATTTACTTT CAGAAAAAAT
TGGTCCAAGA ATCAGAAAAG TAGACTTAAT AGAATAGCTT AATACTACGT TGTCTTAATC CTTTTGCTTA AAATATGACA
AAAATTAGTG TAAAGAAAGC ATTGGTGTTT GTTTTTAGAT GTAAACTTGC TATCGTTAGT GGATGTGTAA TTTTTGAACT
TAGACCTGAG TATTATGATA TAGGCTGTGT TTGGATAAAT TTTTACATTA AGTGAATCTT TTTTTTTCTA TAAATTAAAA
TGGACTTATT TGTGATTTTG AAACCATCTT TTATATTCAC TGTATATAAA AATGTACTTA TTTTGAAATA AATTTACAGT
ATTTTGTTTC TTTAGGATAA CTTATGTGCC CTTTAATTGT TGCAATTATT TTATTAAGAA TGAGTGTTTG ACCATTAAAC
ACTAAACCAA TACTTTTAGC GGTTTGATTT TAAAATTATT GGTTATATTT GCAACTAAAA CATTGATGTA TCGAATTCCT
CCTACCTAGA ACTAGTTTAG GCTCTAACAT GAATCAATAT TATTCAACAA AAACCAATTT TTGTCTCAAA ACTGTTTTGG
ATTTGAGTTG AGACATGAAT ATTGATCTCA GCTTTTGCAA CAATGATAAG ACTCTGATAT GAAGGGAAAT ACTTTATTTG
ATGTTTGATA AAATAGGGGT TTGAAGATTA TTAGAGAAGG CAGTGACTAC TATCTTGTTC ACCAAGGAGA GATACAGAGA
CATCTGGGTT CAAGAAAAAA TCAGGAAAAA GAAACCGCTC AAAGCTTCCA TTCAGAAATT GAATTCAATG GAGAAAGCTG
TCTAGCTGAA GAGAGATCAT GTCGTGGAAT TTTGGACAAA ATCCTTTTTT TCATAGGAGA TTTGGAAGTT GCTTCTGCAG
AAGCCAAACG TAGCCGTGTC AGATGATAGT CTCTACCATT CAATCCACCA CTCAAGTTCA CTGGAAAACT TCTTTGTACC
TAACCATTAT TTCATGTATA TATAATATAC TTATCAAACA ATGTATTCAG TTATTTCAAT AATTTAGCCT TTTCATATAA
GTCATGAGAA TTATGAGGAC CTTCATTGCT TCTATCATTT TGCCTCTCTA CCTAGCGCTG CGATCAATAT GGAACAAGCT
AAAGCTACTA TTTTATAATT G

>Vigan.02G162800.01
CCAACATATA CCTACGCGCG AAAATAATGT AATAATAATA TTATATTATA AAATAACCAA AGCTGTTGTG GATTCTTGTA
TTCCTCCTAC TAGAAGCAAC TAACAAAAAA CAACAAAAAT GAGTGTTTTG TTAGTATTAT GATTGCACAG ACAGAATCCA
AGGAAACGAA ACTCGTGAGT GTTATTTGGA AGAATTATGT GAGTTTATGA TTATTTTCAA GTTGTCGAAA ATGGAGAGGT
TGCCTGTGGA AATATGTACG AAGATATTCG GTCTCTTGGA TTACTACCAT CTTTCTGTTG CTCAACAAGT GTGTAGGAAG
TGGAAGCTGG TGGGCTCAGA CAATGATCTA TGGTGTAACC TTTTTAGAGA GAGATGGGGA GAAGATCATT CTGCTTTTTA
TGCTCCTATT GGCTCAAAAT CATGGAAAGA TGTATATGAG GTGCAAGATC GTTGTGATCG AATTGGAGTG GGTTTGAAGA
TTATTAGAGA AGGCAGTGAC TACTATCTTG TTCACCAAGG AGAGATACAG AGACATCTGG GTTCAAGAAA AAATCAGGAA
AAAGAAACCG CTCAAAGCTT CCATTCAGAA ATTGAATTCA ATGGAGAAAG CTGTCTAGCT GAAGAGAGAT CATGTCGTGG
AATTTTGGAC AAAATCCTTT TTTTCATAGG AGATTTGGAA GTTGCTTCTG CAGAAGCCAA ACGTAGCCGT GTCAGATGAT
AGTCTCTACC ATTCAATCCA CCACTCAAGT TCACTGGAAA ACTTCTTTGT ACCTAACCAT TATTTCATGT ATATATAATA
TACTTATCAA ACAATGTATT CAGTTATTTC AATAATTTAG CCTTTTCATA TAAGTCATGA GAATTATGAG GACCTTCATT
GCTTCTATCA TTTTGCCTCT CTACCTAGCG CTGCGATCAA TATGGAACAA GCTAAAGCTA CTATTTTATA ATTG

>Vigan.02G162800.01
ATGATTATTT TCAAGTTGTC GAAAATGGAG AGGTTGCCTG TGGAAATATG TACGAAGATA TTCGGTCTCT TGGATTACTA
CCATCTTTCT GTTGCTCAAC AAGTGTGTAG GAAGTGGAAG CTGGTGGGCT CAGACAATGA TCTATGGTGT AACCTTTTTA
GAGAGAGATG GGGAGAAGAT CATTCTGCTT TTTATGCTCC TATTGGCTCA AAATCATGGA AAGATGTATA TGAGGTGCAA
GATCGTTGTG ATCGAATTGG AGTGGGTTTG AAGATTATTA GAGAAGGCAG TGACTACTAT CTTGTTCACC AAGGAGAGAT
ACAGAGACAT CTGGGTTCAA GAAAAAATCA GGAAAAAGAA ACCGCTCAAA GCTTCCATTC AGAAATTGAA TTCAATGGAG
AAAGCTGTCT AGCTGAAGAG AGATCATGTC GTGGAATTTT GGACAAAATC CTTTTTTTCA TAGGAGATTT GGAAGTTGCT
TCTGCAGAAG CCAAACGTAG CCGTGTCAGA TGA

>Vigan.02G162800.01
MIIFKLSKME RLPVEICTKI FGLLDYYHLS VAQQVCRKWK LVGSDNDLWC NLFRERWGED HSAFYAPIGS KSWKDVYEVQ
DRCDRIGVGL KIIREGSDYY LVHQGEIQRH LGSRKNQEKE TAQSFHSEIE FNGESCLAEE RSCRGILDKI LFFIGDLEVA
SAEAKRSRVR *