GBrowse Details

Vigan.02G119100.01

Basic Information:
Name: Vigan.02G119100.01
Multiple alignment
Variant Information
Position: Chr02:10118960..10123515 (- strand)
Length: 4556
Functional Information:
Description: Similar to Uncharacterized protein. [K7KUA8, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.02,8.80,1.06,0.47,2.44,2.97,3.19
Arabidopsis thaliana homolog: AT1G22330.1
Automatic updates:
Name: NM_001255766 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition domain-containing protein (LOC100811977), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:10118960..10118994 (- strand)
Length: 35
Type: three_prime_UTR
Position: Chr02:10118995..10119071 (- strand)
Length: 77
Type: CDS
Position: Chr02:10120057..10120312 (- strand)
Length: 256
Type: CDS
Position: Chr02:10120437..10120476 (- strand)
Length: 40
Type: CDS
Position: Chr02:10122072..10122180 (- strand)
Length: 109
Type: CDS
Position: Chr02:10122446..10122569 (- strand)
Length: 124
Type: CDS
Position: Chr02:10122670..10122918 (- strand)
Length: 249
Type: CDS
Position: Chr02:10122919..10123515 (- strand)
Length: 597
Type: five_prime_UTR

>Vigan.02G119100.01 class=Sequence position=Chr02:10118960..10123515 (- strand)
ATTGAATTAT GGCGAGAGGG TCCGTATCTC CTTTTTATTT TCAGTTAAAG GGTAATTTAA AAGACCGTAC TGAAGGAATG
GTTGTAAATG TTTTCAAGGA GACAGAAAAA AGAAAGGAAG TTTGGTAAAT GTGGTTGAGT TACAGAAAAA GCGAAGCGAA
AAATCTAACA GGGGAGAAGA AGAGAAGGAG AAGCATATTA AGGGTAGTAA GAGTGAGTAT ATTAATGCAA AGACAGTGAG
GACACACTTG ACAGTCGTAG TGAGATGGTA TATAGTAACA CAAATCCCTT GTCTTTCTTC CTTCGCTTTT TCTGCCAGCA
AGTTAGAGTT AGCACCTGTC AGATCTCTCT CTCTCACACA CCCTTTTATT CAAAATAAAT TTCTTTACTC TCCTTATATA
TTTTTGTTGC AATCAACCAA CGCCTCTGTT CCAAACAACC ATCATAAACC ACGCCCACCT TCTTCTCTCA CCCTCTTCAA
ATGCAATGAT TCCGCTGCTG CAAAATCCAA CACACTAGGG AAGCCACACA TATATACCAC AGAGCAGAAA TATTTTATGG
AACTTTGGCC CTCAGAAGAG TAGAAGAAAG AGCTTAAATG AGTGAGACAG CCAGTCTTCA TGCACAGACA AGGACACCCA
TTTCTTCTCT TGAAGCCATG GCTCATCATC ACCCGCATTA TCGGTCACCC TTCGGAGACA CTACCTTCAC CAAACTCTTC
GTCGGAGGAC TAGCCTGGGA GACTCCCACC GAAGAAATGC GCAAATATTT CCAGCAGTTC GGGGACATTC TTGAAGCTGT
CATAATCACT GACAAAAACA CCGGAAAATC CAAAGGCTAC GGTTTCGTAT GTACTAACTC CCTTTCTCTT CATCTCTACG
CTTCGCATAC CTTCAATACC ACCAAGTTAA CGAAACTATA TATATGTACC ATGAATTCAA CAACAGGTAA CATTCTGCGA
CCAAGAATCA GCAAGAAGAG CATGTGCTGA TCCAAATCCA ATAATAGATG GCAGAAGAGC AAATTGCAAT ATTGCTTCTC
TGGGAAGGAC TCGACCTTCA CCACCTCGAG GTTATAATCC TTTCATACAT TATTAATATT ATCTCTCTTA ACGTATAAAA
CTGAACTATA TAGTACATGG TTTTCGTTTG GTATGCATCA TTTCATACTG CCTGTCTTTT GATATGTGAA TATCCAAGTA
CTTTTTTTCT CAATACATGT TCATCATCCC TTTTAACAGG AGAGAAAAGT AAAATAATTT ACCATAAAAG TAAGAGAAAA
AAAACTATTC AGTGTCTTTT GATATGATAA GGTATTTTGG TGGGTGGTAA TGCAGGGAGG AATATAGTTC AAGGTGGAGG
AGGAACAACA GTACAGAGTG TTCCGGGAGC GGGAGCGCCG CCGTCGCTGC CGCCAGCACC TGCTGTTCTG TATCCGCCAT
ATGGGTGAGT TGAGTTAGCT TTGTTCATTC AGTGATGGCA TTAATAAAAC ATAATTTGAT AGCACTCATA GTCAAAGGAA
CTGGTCCATG ATGTTAATGG GGAAGTGCAT GTAGACGCAC TACATCTTAC TGTCTGCATA TGTTGCTCAC TGCTCCTCAC
CAGTTATAGT AGGCATCAGT GTCAGCCTAA AAATCATCTC GTAAATAAAG TACAGATGGG AAAAGGTTGC TCTGCCATCC
ACATCCACAT AACGTGCATT AGTGCTCCTT CTATTTTCCT TAATCTCATC TCACTTCCTT AATGCTTAAT CAACTGCATT
TTTTTAGCTC GTTAATCAAT TGCTTTCAAT ATTTTTCGCC TCATCTTTCT CTAAATCTGT TTGTAATAGT TTTAAATTTG
TAAATGCCGT AAATTGAATA AAGCGTATGG AGACTTTATT ACAAACGTAG CATCATTGAT ATAGATAGTT ACAGACGACT
ATGGTAATAG TAAAAGTGCT AGTGATAACA GTTACGATCG GTAGATATGT GACCCCTGAC AGTGCATATA CGTATATATA
TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATGTGTGTG TGTGTGTCTG TGGTCCTTCA
ACGATTAATT TAATTTATGA TCTTGTACAA GATAAATCCC ACAGCTCTCG GTACTTTTGC ATGTTCTCGA TCATCGAGTC
ATTTTCGCAC CAGCATGTAC TCTTCAGGGC TCTAAAATAC TATAAATGTA AAAGTTTAGC TTAGAGTTCA AAAGTAGGCA
TGGAAAATTG TATAAAAAGT ATAGAGATGC AGACTTTTTC TACTTGGTAC CTTTGACTGG AAAATGCTAA TATTAACTTT
AGATGCTTTA CACTAAAGCA AAAGCTATTA TTATATTGAA ATACTGTGGT TCTTAATAAG CTATTAAATT TGATGAGTTG
GATATACATA GTGACAATGA TTACACAGTT TCATTTCTTC GAAAGAGTGT GACTCATCAG CTTAACCTTA TTAGTATACT
GAGTTTACCC GGTCATATAT ATCTTTTCAT GTTAGTTATA CAACATAGTC AGTCAGGTTA ACTAATGATA AAAAAAGAAT
CTATGAAACT TTCGTGAAGA ATAATTGATC TTTATTAATT GTTTTTTCAA GTGTCTCTCT TGTTTGCATA CCCGAGATAT
TGACATTAAA GCTAATCCCT CTTTCTATAT ATACTCTCCT TCCTTTTCTG CTTATTGGTT GGGCAACCAG TTATTCATAA
TATGCACACC ATCTTCAAAA GAAAGCAACC ACTGAATTAA GTCATAGTAA ATTCAAACTT GGGAACTGTG TATCGGGGGC
CTCAATGCTA GCACACAAAC ATCAATCAAG CTCTCTTTCT TCCTCCCTTT AGACACAGAT CAACGAGGGA CCCACGACAA
TATACGACGG ATACTGATGT TACCCGAAAA ACATTACATA ATTCACAACT GCATGCTCTT TTGAATTATT ACTTTATTCT
CATAGAAAAA TGCAGTTATG CATGCAATTT ACATTATTTT CCCACTGATT AAACTCCTTT CGACTTTACT CTCTCTCAGC
TACGCAGCCT ACACTCCTGA TTATGGATAC CACCACCAAG TAAGTCTGTT TCTTTGTCAT TAGCAAATAT GTAGATTTTA
ATGACCATAT CTGAATTTAG CAAGTATTAG TGGAGAGCAG TTGGATAATG TGAAGTTAAT GAATAATGAT TGTACGAAAA
CAGGCGACAT TGTACAACCC ACAGATTCAG CAACCACAAT ACTATCAACA AGTCTACGGA GCATCATCTT CCACCATGAG
CACCCCGTAT TACTATGGTT ACTCTGTGCA AGCACCAAGA AACACATTTT CCTCACCCCA GGCAAATCGT CTATCACCTG
GACCATCTTA TCTGTACTAT CCTACACCCG TGGAAGTCTC ATTCTCTGCA TATCGCCCAC TCCAATCACC AGTGACCCAA
AGCTTTCCTT CTCCAACTGG TAACTTTAAT TCATCCCTTA TACTCTGTAT TTAGTTGTTT TTAATTACTT TTCATCATTC
AATTATTCTT TCTTTCAAAA ACATATTCCA TTCACACACG TACCACAGTC CACAGAGATG GTGCGCGAGT GAGAGAGACA
GAGACAGAGA CAGAGATGTA TGAATTATGA TGCGTTTACT GACACACTAT ATATTATGAT TTGGCTGCAA TATATGGGCA
TGGGGTCCAC ATGGGCAACC ACAGAGCCAT GTGAATGAGC TGTCTCGGTT GTGCCATGAA TCAATAGGTC AATGTGGAAA
GTCATGACAG AGTTAGAGAG GGTCATCGTG TAAAGTAACA GTGGATACAT GTGATTTCAG TAGCAAAGAA AAAATACAAT
GGGGTGGTTA ATTTTTATTT ATTTTTATAT ATATATTACT AGTTAGTTCT TTAAGGCAGT CAAATCTTCT GCCATTCATG
TGTTGGCCCA CATGCATGTT AGATTATATA AACTTTTATT TTTGAATCAA CGAGACCATC ACACATCAAA GCAAACACAA
CCTTTTTTTC ACCCTCTGTG AGTACAATCT CTGCTGTATC AACTTCTAAT TTCTGTATTT ACAGAACTGA AAAAACAGTT
TTTCCATTTC ACTCAATTTT CACATATCCT AAGCAAAAAA CTACATGCAA GATTCTGTCA AATGTTTCTT TACTATGTCA
CATAAACATG TTTGCAAGAG TGAATAATTG TCTTAATGAG AAGTGAGATG GGAGTGAGTT TCGTCAGAGA CTAGCCGTGG
TCTTACTTTG TTTGCTTTTC TTTAAAGAGT CTTATCTGGT TTGCCATTTT TTCTCTGCCC ATGTGCCCAA GATATTATAT
AGTAATAAGA AAATAATTGT CGAAAATGAC GTTGCTATTT ATCATTTACG TACCTGCTTA TGATATCTAT ATTTCAGCAT
AACTTCAATT ATTGTTTATT AATTATGTGG TTGATCTTGA TCAGATTCAC AGAGCCAGCA GCGTATCTCC TCTGAAACAG
CAGCCACTTC AGAAAGTTCA AATACCCAAG GGAAGAACTA ATATATATAT ATATATATAT ATATATATAT ATATAT

>Vigan.02G119100.01
ATTGAATTAT GGCGAGAGGG TCCGTATCTC CTTTTTATTT TCAGTTAAAG GGTAATTTAA AAGACCGTAC TGAAGGAATG
GTTGTAAATG TTTTCAAGGA GACAGAAAAA AGAAAGGAAG TTTGGTAAAT GTGGTTGAGT TACAGAAAAA GCGAAGCGAA
AAATCTAACA GGGGAGAAGA AGAGAAGGAG AAGCATATTA AGGGTAGTAA GAGTGAGTAT ATTAATGCAA AGACAGTGAG
GACACACTTG ACAGTCGTAG TGAGATGGTA TATAGTAACA CAAATCCCTT GTCTTTCTTC CTTCGCTTTT TCTGCCAGCA
AGTTAGAGTT AGCACCTGTC AGATCTCTCT CTCTCACACA CCCTTTTATT CAAAATAAAT TTCTTTACTC TCCTTATATA
TTTTTGTTGC AATCAACCAA CGCCTCTGTT CCAAACAACC ATCATAAACC ACGCCCACCT TCTTCTCTCA CCCTCTTCAA
ATGCAATGAT TCCGCTGCTG CAAAATCCAA CACACTAGGG AAGCCACACA TATATACCAC AGAGCAGAAA TATTTTATGG
AACTTTGGCC CTCAGAAGAG TAGAAGAAAG AGCTTAAATG AGTGAGACAG CCAGTCTTCA TGCACAGACA AGGACACCCA
TTTCTTCTCT TGAAGCCATG GCTCATCATC ACCCGCATTA TCGGTCACCC TTCGGAGACA CTACCTTCAC CAAACTCTTC
GTCGGAGGAC TAGCCTGGGA GACTCCCACC GAAGAAATGC GCAAATATTT CCAGCAGTTC GGGGACATTC TTGAAGCTGT
CATAATCACT GACAAAAACA CCGGAAAATC CAAAGGCTAC GGTTTCGTAA CATTCTGCGA CCAAGAATCA GCAAGAAGAG
CATGTGCTGA TCCAAATCCA ATAATAGATG GCAGAAGAGC AAATTGCAAT ATTGCTTCTC TGGGAAGGAC TCGACCTTCA
CCACCTCGAG GGAGGAATAT AGTTCAAGGT GGAGGAGGAA CAACAGTACA GAGTGTTCCG GGAGCGGGAG CGCCGCCGTC
GCTGCCGCCA GCACCTGCTG TTCTGTATCC GCCATATGGC TACGCAGCCT ACACTCCTGA TTATGGATAC CACCACCAAG
CGACATTGTA CAACCCACAG ATTCAGCAAC CACAATACTA TCAACAAGTC TACGGAGCAT CATCTTCCAC CATGAGCACC
CCGTATTACT ATGGTTACTC TGTGCAAGCA CCAAGAAACA CATTTTCCTC ACCCCAGGCA AATCGTCTAT CACCTGGACC
ATCTTATCTG TACTATCCTA CACCCGTGGA AGTCTCATTC TCTGCATATC GCCCACTCCA ATCACCAGTG ACCCAAAGCT
TTCCTTCTCC AACTGATTCA CAGAGCCAGC AGCGTATCTC CTCTGAAACA GCAGCCACTT CAGAAAGTTC AAATACCCAA
GGGAAGAACT AATATATATA TATATATATA TATATATATA TATATAT

>Vigan.02G119100.01
ATGAGTGAGA CAGCCAGTCT TCATGCACAG ACAAGGACAC CCATTTCTTC TCTTGAAGCC ATGGCTCATC ATCACCCGCA
TTATCGGTCA CCCTTCGGAG ACACTACCTT CACCAAACTC TTCGTCGGAG GACTAGCCTG GGAGACTCCC ACCGAAGAAA
TGCGCAAATA TTTCCAGCAG TTCGGGGACA TTCTTGAAGC TGTCATAATC ACTGACAAAA ACACCGGAAA ATCCAAAGGC
TACGGTTTCG TAACATTCTG CGACCAAGAA TCAGCAAGAA GAGCATGTGC TGATCCAAAT CCAATAATAG ATGGCAGAAG
AGCAAATTGC AATATTGCTT CTCTGGGAAG GACTCGACCT TCACCACCTC GAGGGAGGAA TATAGTTCAA GGTGGAGGAG
GAACAACAGT ACAGAGTGTT CCGGGAGCGG GAGCGCCGCC GTCGCTGCCG CCAGCACCTG CTGTTCTGTA TCCGCCATAT
GGCTACGCAG CCTACACTCC TGATTATGGA TACCACCACC AAGCGACATT GTACAACCCA CAGATTCAGC AACCACAATA
CTATCAACAA GTCTACGGAG CATCATCTTC CACCATGAGC ACCCCGTATT ACTATGGTTA CTCTGTGCAA GCACCAAGAA
ACACATTTTC CTCACCCCAG GCAAATCGTC TATCACCTGG ACCATCTTAT CTGTACTATC CTACACCCGT GGAAGTCTCA
TTCTCTGCAT ATCGCCCACT CCAATCACCA GTGACCCAAA GCTTTCCTTC TCCAACTGAT TCACAGAGCC AGCAGCGTAT
CTCCTCTGAA ACAGCAGCCA CTTCAGAAAG TTCAAATACC CAAGGGAAGA ACTAA

>Vigan.02G119100.01
MSETASLHAQ TRTPISSLEA MAHHHPHYRS PFGDTTFTKL FVGGLAWETP TEEMRKYFQQ FGDILEAVII TDKNTGKSKG
YGFVTFCDQE SARRACADPN PIIDGRRANC NIASLGRTRP SPPRGRNIVQ GGGGTTVQSV PGAGAPPSLP PAPAVLYPPY
GYAAYTPDYG YHHQATLYNP QIQQPQYYQQ VYGASSSTMS TPYYYGYSVQ APRNTFSSPQ ANRLSPGPSY LYYPTPVEVS
FSAYRPLQSP VTQSFPSPTD SQSQQRISSE TAATSESSNT QGKN*