GBrowse Details

Vigan.02G115400.01

Basic Information:
Name: Vigan.02G115400.01
Multiple alignment
Variant Information
Position: Chr02:9701821..9708021 (+ strand)
Length: 6201
Functional Information:
Description: Similar to Uncharacterized protein. [I1JV87, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Zinc finger, GATA-type (IPR000679)
Tify (IPR010399)
CCT domain (IPR010402)
Zinc finger, NHR/GATA-type (IPR013088)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.73,20.61,6.45,25.35,9.56,3.78,13.79,12.00
Automatic updates:
Name: NM_001255457 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GATA transcription factor 24-like (LOC100784257), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:9701821..9702252 (+ strand)
Length: 432
Type: five_prime_UTR
Position: Chr02:9702253..9702507 (+ strand)
Length: 255
Type: CDS
Position: Chr02:9703854..9703940 (+ strand)
Length: 87
Type: CDS
Position: Chr02:9704022..9704155 (+ strand)
Length: 134
Type: CDS
Position: Chr02:9704328..9704438 (+ strand)
Length: 111
Type: CDS
Position: Chr02:9704665..9704776 (+ strand)
Length: 112
Type: CDS
Position: Chr02:9705261..9705323 (+ strand)
Length: 63
Type: CDS
Position: Chr02:9706696..9706764 (+ strand)
Length: 69
Type: CDS
Position: Chr02:9706848..9706922 (+ strand)
Length: 75
Type: CDS
Position: Chr02:9707043..9707126 (+ strand)
Length: 84
Type: CDS
Position: Chr02:9707307..9707372 (+ strand)
Length: 66
Type: CDS
Position: Chr02:9707373..9708021 (+ strand)
Length: 649
Type: three_prime_UTR

>Vigan.02G115400.01 class=Sequence position=Chr02:9701821..9708021 (+ strand)
TATTATTTGA GCAATTATTA AGTGCCTAAC CTATTGTCTA TGAATGAGTA GAGGTGACGT GAGATGGGAG CTACACTGCT
CTGCGAACCG TTAACTCGAG AAGAAGTACC TACACCCTAC AACCGTACGC CTTCCCACAA CGGATAACTA ACTACAACTT
TCATTTCATC TTTTCTTATA TACTTACTCT CTTCAACAAA CAATAACAAC AACACCACAC ACGCTGACGC CGTCAAACCA
AATTTCACTC TCCTTTTCAG TGCGTGCCTT TCACCAAACA CGCCCTTTCT TCTCCTCTCT CTGTCTCTCT CTCTCCAGAT
CTTTGCTCTC TCCATTTTTC TGTCCTTCTT CCTAACTCAA TTTCCCTCAC GTAAACCATG CTCCACCGCT TCACAAATTA
GGGTTTCTGC TGTCCGACAC GTGGGGGAAT CGATGGCGTC ACTCAATCCG CAGCCTCTGC AGTTCCAGCA CCCTGCGATA
CCCGTCGGCG ACGACGGTGA CAGTGACGCC GCTGATGATG ATGCTATGGA TGAGTTGGAG GATGCGCATG TTACTTCAGT
GAACGTCGTT GCTAATGCTG CCAGTGCCTA CCAAGAACCG CTGCCTGCTA TGCCTTCCAG AACTAGCGAG CTCACTCTTT
CTTTCGAGGG TGAGGTTTAT GTCTTTCCCG CAGTCACTCC TCAGAAGGTG ATTCTATTTA TATAAATAAT ATACATAGAC
ATACATATAT ACATATACAT ATATACATAT ATACATACGT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATAAAT TTCTTGGAAT GTTCTCAAGC TTCAAAGCTT TTTTTTTATT ATGCTATGGT TCGTCGTTTT GTTGACACAA
TTCATTGCGA TTGGTTTGGG TCATGTAGGT TTTTTGGTAA ATTTAACAAA TTGAGGAGCG GGGAGTTTTG GTAAATGTTA
GGATTGTAAA GAAAAAGTAA ATAACACAAA GGTTAAATAA AATTACATGC TCAGTGGTTT TCGGATTGGC AATATTCCTA
TAGAATTTCT TTCAAAGCAG AGATAATGAA ACCGTAGACA CAGAATCAAG TAAAATTCCA TCAACGATAT AATTTTATGT
AATTAATGGT ATGTATTTTG CTGTAAGGGG GATGTGTGGG CTATGTCTTG GTTTTTGTCA TGATTAAAGA AAGATTTATA
AAGCATGGGT GAATTAGAAA TGTGCTGCAG AGTTGGATTG TTTACAATCT GTTAGTATTA ATCTATTGAA GGATAAGCAG
TTTGGAAAGG CTTAAGCTTA GTATTGGGAA CGGTATAAAT TTAGCCTCTA GCTTAGGCTT CACCATTTTG GGTATTGCAT
TGTACCTAGA CTTAATTGCA TCAGCCAAAC GATATAGTAC TGCAATTTTT CTTAAGTAGA ATGTAGTGAG TTATAAACTG
TAATTACCAA AATAAATTGA GTTCCTATCG GGGATACTTT TAAGGATTTG AAATTTTAAG ATAATATCAC AGAGGCCTTA
TAAAATAAAT TAAACCCCCT TCTAAAATAT TATGGGATGA GGTCATTTAT CTCACTAAAT GATGCGTGTC CAGTTAGAGT
TCGGTGAAGT GTTTAGTGAG TCTCAAATGA ATTTTAACCA ATAAAAGAAT ATATTTTATT CATAGTCCTC TTGAGTCTTA
AGCCTAAGTA GTGTCCGTAT TCCGAGTCAA CTAATGATAG CAACTTGAGT AATGTATATG GGGTGCATAA GTTTCATATG
GTGGAAAATT TAGTATTTAG TTCTCACTTC TTAGTTGTTA GATTTTGAGG ATGAATTCTC CAAATAGGTG CTTGTCAATT
GATATTAGAG CTAATCTAAC AACTGATAGT AATTGTTAAG CTAACTATTG TAGACTGGTT CAAATTTCTG ATCATTTCAA
ACAATTGATG GGAGATCGAA ACCGGCATTT AAATTAAATT AAACCAATGT ACTGTTCAAC TCTTCGAAAG AATGGCTAAG
AGAAATGCTT GGTGACCAAA TTTTACATTG CAGGTTCAAG CCGTCTTGCT GCTTTTGGGA GGACGTGATG TGCACGCAGG
TGTGCCTGCT GTTGAACTAC CATTTGATCA AAGTAACAGG GTAATGTATA TATATCTACT TAACGAGATC AGCTTGATAT
CATTTTAGGC TTTCATTTGA GTACTTTACT AAATTCTCTA GGGTATGGGT GATACTCCGA AGCTTTCGAA CCTTTCACGA
AGAATAGCAT CCTTGGTCAG ATTCCGCGAG AAACGAAAGG AAAGATGTTT TGACAAGAAA ATTAGGTATA CTGTGAGAAA
AGAGGTGGCA CAGAGGTAAA TAAAATTTCA ATTGCACCCA TTTCACCTAA ATTATGAGAT GACCTTTTTT CCAATGAAAA
TTGACTTGGT TGTGATAATA ATATCAGGTT GTTTCTGAAG TTTAATGTGT TCTTTTATAT TTATAATTTT TTTGTGTTCT
GTTTTTGTTG TCTTTTGCTC TTGTTAGGAT GCATAGGAAG AATGGGCAGT TTGCATCCTT GAAAGAAAGC CCAGGTTCAT
CTAACTGGGA TTCTGCCCGG AGTTCTGCTC AAGATGGCAC TTCTCATTCT GAATCTGTGT GAGTTTTAAA GCTTGAGTTT
CCTACACACA CACACACACA CACACACATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATA TATATATATT ATTTTATCAG TGTTGTGGTT CTTTGCGTGT GTATTTTTAT TCCATTTTCG
TAAACATTAA TTATTCACGC TCCTTGCTTT TTCATGTCTT CTAGACGCAG ATGTCACCAT TGTGGTGTCA CTGAAAATAA
TACTCCTGCA ATGCGTCGGG GGCCAGCTGG ACCAAGGACT TTATGTAATG CATGCGGCCT TATGTGGGCA AACAAGGTTA
AGTTTGGTTG TGATCAAATG CTTGGTGTGA ACTTGAACAT CTGTACTTTA TTTTAAGTAC AACGACAAAA TTGCTTTCCT
CTAAATGAAG TCAGCTAGCT ACATGGATGA AATGATACTA TCGTGTTGTG TTCAGAATGG CCATATAAGT TTAAAGTAGA
ATTATCAAAA TCTGATTATA ATATTTTTGT CCATAATGAT ATGGAAACTG TTCTGGATTT CTATAGCACC ATTTTATTGT
TCATGTTGTG GACTACGGTC CCAATGGTAT AAGAACTAGC CGGAGCTTTA TGGTCAATAT AGCCTTTTGC CTCAGTGGCA
TGTTTCTGAC CACATGACAT CCGCTGGACA GAATATGTAT TTTTTTCTCT TTCCTTGCAT TCTCTTTGTT CCTTCTCATG
AACTGCATCA TCAATTTCAT TAACTGTTTG CACTTTACAA ATATCTTCAT TTCCCTGAAT CCACTTCTCA ACTCTGACAG
GGCACACTCA GAGATCTCAG CAAGGGAGGA AGAAATCTTT CTGTTGTTGA GCAAAGTGAT CTGGTATGTA AGACAGAGCT
TAATTTTCTT CCAATTTATT CTCTGATTGT AAATGCAAAG GAGATCGATT TTACTTATAT TTTTAATTAT CAGTTCCAAA
TGAAATGTTT CACTCATGGA TCTGTTATTG GGTGTGAAAT ATCGAAGTTT TTTCTTGGTA AATATTTTGT GATGGGAAAA
TTAAATTCAC TAGAGATAAA AAAAAAAGGT ACAAGTAGGT GGAGGATAAC GTAATATCTT AGTCGTTAGT CAAGTTACAG
ATGCTCTAAA TTACGATTCA GTCACACTCC CTTAGTAACA AAGTCAAAGA TCACCCGGTC AAAACCCCAT TGGATAAGGT
ATCTTCATGA AACTTACCAG TTAAAGATTT CTGATTCCAA TCAATAGTGT AAACAGTTGA CATGATAATA AATTCCCTTA
TCTTGATGGA GTTAGTAATT ATTTTAAAGA ATTTAAAATG CTGAGTGAAA TATGTTGTTT GCCTGATAAT TTTTTGAAGA
ACATTTTTAA AATGTGGAAT TATTTTAATT TTAATTATTT AAAAATTATA GAATTTAAAT TCTATTAAAA TAGTTAGAAT
TGGAAATGTT ACACTTGTCT TTTATCTCAC ATCTATGTAT TTTCATTCGC TTATCTCCTC TGTTTCTGTC CCCTCTCTTC
TACGTTCTTT CCTCCGCTCT CCACTGATTC TCTTTCTTTT TCTCTCTTTT TTTTCCTTTC TCCGATCTCT CTCATTTGTC
CTCTCTTCAC TCTATCTTCT CTCCTCTCCC TTCTCTCTTC TTTTTTATCT ATTTCAAAAG TGTCATATTT TTATTTTTAA
TTAATAAATA CTATTACATA TTAGCTTTTG TCATTAAATG TTTAAAATTA GTTAATATTT TATATTGAAA TTTCAGTTAT
TTAAATATTT TTAATTTTTC TACACATACT AGAAATTAAG TTACCTATCC AAATTAAAAA TTTAAGTTTA ATACATTTAA
AGTGATTTAT CTGAATAAAA TATTTGAAGA ATATAAAATT TAATGTACAA CAATTCAAAT TTGTAAAATT TCTAAAAGCG
ACCTTGCTTT TTTTGTAAAA TATTTATTAC TCAACACTGT ATAGCTGAAT ATGAATATTT GGGTTAAAAT TATTTCTAAC
CAGAAGCAGA TCCATTTTGT TTTTCAATAG TTTCAAAACA ACCTAATCCC CAATAAGGGT GAAAAACCAA CTTATTAGTT
TGAATTAGGT TGTTTTGATT GGTTTTACGA CAGTAATTCG TTTCAACAGC CTTACCTGAA AGTCTTTGCG GTGCATATAT
CTTCCTTTCA GTTGCATTGC AGTTCTACTA TATGTACATT GGTGGTTTAC TCATCAACGT GCGTGGAATT TTCAGGATAT
TCCTATTGAT GTCAAGCCTA CTTCTGTTAT TGAAAGAGAA TTGTCCGGCA TCCATGATGA GCAAGTAGAA TCTTTTACAT
ATTGCAAATT CATTTTCGAC AGTACACATT TTTTTTCCTT TTTATGAACT TTTCATGGGG TATGCAGGGT AGTTCTGAAG
ATCCGTCCAA GTCCAACACA GGTGATGGCT CTAGTGGTCA TGCAGTAAAC CCTAGTGATG AGGTAGTTTT AAATATCTCT
CTATATTACA CACACATATA TATAGGTATT GAGAAAATGA AAGCATATAA TGAATTCCTA TGATGCTTGT CTTAATGGGT
ATTGGGGTGA TTTCTTGCTC AGGAATTGCC TGAAACTGCA GACCACTTTA CGAATGCTCC GCCATTAGTA GGACTTGTTC
ATTCTTCAAG GAATGACACT GAACAGGTAT TCACAACCCT ACACAATTGT AAGGGCGACT TCATCTGAGT TCAAATGGAG
CCCCACTTTA CCAATGAAAG TTATAAAATG GAGCCAATTA TACATTTGTA AATACACGAG TTTTTTATAT TACTCATAAC
ATGCATTTCA GTAGCAATTT CTTATGAGGT TCATTTTGAT CTTCAGGAAC CTCTGGTTGA ACTTTCTAAT CCTTCAGATA
CAGACATTGA CATTCCAGGA AACTTTGATT AGAAGGTACT AAGTGATTCA TTACGTTGGG GGGTTTTATA TAATGGTCCC
TCTGTAGTAT ATTGTTGATG AGATCTAGAA GCAGTGATAC ATACCAGAAA TAATTAGGAA GTTCGGGGTT ATGACTAATT
GTAGCCCTCG GAAAGGGGAA ACTGAAATGA TTACGGATTA GCAAATGTCA AGAAGCTCTG CTATTCCGGC CTAACATTGG
GTAGTCTGTG ACATTGATGC TGGTATAGGT GCCAAACATT GTTTGTGTAT ATGTTATAAT GTGATTTTCC TTCAGTGTTT
ATATAATAAA ATATTCATTA GTCAGGCCTG TGTTAATAAA ATTGCTCTCT ACATGCTCCT GACTATAATA ATTTCATTGA
GATCAAAGCT CTGCAACCCT GATTTTAGAG ATGAAATTTC GGTGATATGG TCTGCCACTC AAGAATGGGT ATTTGAACGT
CAACGCAGCG GTGTGCTAAT TAGGACCTTC AGGCAAGTTT AGGTTTGTGA TGTCGACTCT TGGTGAGACC ATTTGAATGT
TATAATTAGC ACAGATAGAC TTGTTCCAGA TGTACATATA CATATAAAAT AAATATTAAT CATCGTCTTC TCAATGTTCT
TCCAGACACA TGTTATCAAT ATTGCCACTG CTGTCATCTG C

>Vigan.02G115400.01
TATTATTTGA GCAATTATTA AGTGCCTAAC CTATTGTCTA TGAATGAGTA GAGGTGACGT GAGATGGGAG CTACACTGCT
CTGCGAACCG TTAACTCGAG AAGAAGTACC TACACCCTAC AACCGTACGC CTTCCCACAA CGGATAACTA ACTACAACTT
TCATTTCATC TTTTCTTATA TACTTACTCT CTTCAACAAA CAATAACAAC AACACCACAC ACGCTGACGC CGTCAAACCA
AATTTCACTC TCCTTTTCAG TGCGTGCCTT TCACCAAACA CGCCCTTTCT TCTCCTCTCT CTGTCTCTCT CTCTCCAGAT
CTTTGCTCTC TCCATTTTTC TGTCCTTCTT CCTAACTCAA TTTCCCTCAC GTAAACCATG CTCCACCGCT TCACAAATTA
GGGTTTCTGC TGTCCGACAC GTGGGGGAAT CGATGGCGTC ACTCAATCCG CAGCCTCTGC AGTTCCAGCA CCCTGCGATA
CCCGTCGGCG ACGACGGTGA CAGTGACGCC GCTGATGATG ATGCTATGGA TGAGTTGGAG GATGCGCATG TTACTTCAGT
GAACGTCGTT GCTAATGCTG CCAGTGCCTA CCAAGAACCG CTGCCTGCTA TGCCTTCCAG AACTAGCGAG CTCACTCTTT
CTTTCGAGGG TGAGGTTTAT GTCTTTCCCG CAGTCACTCC TCAGAAGGTT CAAGCCGTCT TGCTGCTTTT GGGAGGACGT
GATGTGCACG CAGGTGTGCC TGCTGTTGAA CTACCATTTG ATCAAAGTAA CAGGGGTATG GGTGATACTC CGAAGCTTTC
GAACCTTTCA CGAAGAATAG CATCCTTGGT CAGATTCCGC GAGAAACGAA AGGAAAGATG TTTTGACAAG AAAATTAGGT
ATACTGTGAG AAAAGAGGTG GCACAGAGGA TGCATAGGAA GAATGGGCAG TTTGCATCCT TGAAAGAAAG CCCAGGTTCA
TCTAACTGGG ATTCTGCCCG GAGTTCTGCT CAAGATGGCA CTTCTCATTC TGAATCTGTA CGCAGATGTC ACCATTGTGG
TGTCACTGAA AATAATACTC CTGCAATGCG TCGGGGGCCA GCTGGACCAA GGACTTTATG TAATGCATGC GGCCTTATGT
GGGCAAACAA GGGCACACTC AGAGATCTCA GCAAGGGAGG AAGAAATCTT TCTGTTGTTG AGCAAAGTGA TCTGGATATT
CCTATTGATG TCAAGCCTAC TTCTGTTATT GAAAGAGAAT TGTCCGGCAT CCATGATGAG CAAGGTAGTT CTGAAGATCC
GTCCAAGTCC AACACAGGTG ATGGCTCTAG TGGTCATGCA GTAAACCCTA GTGATGAGGA ATTGCCTGAA ACTGCAGACC
ACTTTACGAA TGCTCCGCCA TTAGTAGGAC TTGTTCATTC TTCAAGGAAT GACACTGAAC AGGAACCTCT GGTTGAACTT
TCTAATCCTT CAGATACAGA CATTGACATT CCAGGAAACT TTGATTAGAA GGTACTAAGT GATTCATTAC GTTGGGGGGT
TTTATATAAT GGTCCCTCTG TAGTATATTG TTGATGAGAT CTAGAAGCAG TGATACATAC CAGAAATAAT TAGGAAGTTC
GGGGTTATGA CTAATTGTAG CCCTCGGAAA GGGGAAACTG AAATGATTAC GGATTAGCAA ATGTCAAGAA GCTCTGCTAT
TCCGGCCTAA CATTGGGTAG TCTGTGACAT TGATGCTGGT ATAGGTGCCA AACATTGTTT GTGTATATGT TATAATGTGA
TTTTCCTTCA GTGTTTATAT AATAAAATAT TCATTAGTCA GGCCTGTGTT AATAAAATTG CTCTCTACAT GCTCCTGACT
ATAATAATTT CATTGAGATC AAAGCTCTGC AACCCTGATT TTAGAGATGA AATTTCGGTG ATATGGTCTG CCACTCAAGA
ATGGGTATTT GAACGTCAAC GCAGCGGTGT GCTAATTAGG ACCTTCAGGC AAGTTTAGGT TTGTGATGTC GACTCTTGGT
GAGACCATTT GAATGTTATA ATTAGCACAG ATAGACTTGT TCCAGATGTA CATATACATA TAAAATAAAT ATTAATCATC
GTCTTCTCAA TGTTCTTCCA GACACATGTT ATCAATATTG CCACTGCTGT CATCTGC

>Vigan.02G115400.01
ATGGCGTCAC TCAATCCGCA GCCTCTGCAG TTCCAGCACC CTGCGATACC CGTCGGCGAC GACGGTGACA GTGACGCCGC
TGATGATGAT GCTATGGATG AGTTGGAGGA TGCGCATGTT ACTTCAGTGA ACGTCGTTGC TAATGCTGCC AGTGCCTACC
AAGAACCGCT GCCTGCTATG CCTTCCAGAA CTAGCGAGCT CACTCTTTCT TTCGAGGGTG AGGTTTATGT CTTTCCCGCA
GTCACTCCTC AGAAGGTTCA AGCCGTCTTG CTGCTTTTGG GAGGACGTGA TGTGCACGCA GGTGTGCCTG CTGTTGAACT
ACCATTTGAT CAAAGTAACA GGGGTATGGG TGATACTCCG AAGCTTTCGA ACCTTTCACG AAGAATAGCA TCCTTGGTCA
GATTCCGCGA GAAACGAAAG GAAAGATGTT TTGACAAGAA AATTAGGTAT ACTGTGAGAA AAGAGGTGGC ACAGAGGATG
CATAGGAAGA ATGGGCAGTT TGCATCCTTG AAAGAAAGCC CAGGTTCATC TAACTGGGAT TCTGCCCGGA GTTCTGCTCA
AGATGGCACT TCTCATTCTG AATCTGTACG CAGATGTCAC CATTGTGGTG TCACTGAAAA TAATACTCCT GCAATGCGTC
GGGGGCCAGC TGGACCAAGG ACTTTATGTA ATGCATGCGG CCTTATGTGG GCAAACAAGG GCACACTCAG AGATCTCAGC
AAGGGAGGAA GAAATCTTTC TGTTGTTGAG CAAAGTGATC TGGATATTCC TATTGATGTC AAGCCTACTT CTGTTATTGA
AAGAGAATTG TCCGGCATCC ATGATGAGCA AGGTAGTTCT GAAGATCCGT CCAAGTCCAA CACAGGTGAT GGCTCTAGTG
GTCATGCAGT AAACCCTAGT GATGAGGAAT TGCCTGAAAC TGCAGACCAC TTTACGAATG CTCCGCCATT AGTAGGACTT
GTTCATTCTT CAAGGAATGA CACTGAACAG GAACCTCTGG TTGAACTTTC TAATCCTTCA GATACAGACA TTGACATTCC
AGGAAACTTT GATTAG

>Vigan.02G115400.01
MASLNPQPLQ FQHPAIPVGD DGDSDAADDD AMDELEDAHV TSVNVVANAA SAYQEPLPAM PSRTSELTLS FEGEVYVFPA
VTPQKVQAVL LLLGGRDVHA GVPAVELPFD QSNRGMGDTP KLSNLSRRIA SLVRFREKRK ERCFDKKIRY TVRKEVAQRM
HRKNGQFASL KESPGSSNWD SARSSAQDGT SHSESVRRCH HCGVTENNTP AMRRGPAGPR TLCNACGLMW ANKGTLRDLS
KGGRNLSVVE QSDLDIPIDV KPTSVIEREL SGIHDEQGSS EDPSKSNTGD GSSGHAVNPS DEELPETADH FTNAPPLVGL
VHSSRNDTEQ EPLVELSNPS DTDIDIPGNF D*