GBrowse Details

Vigan.02G105400.01

Basic Information:
Name: Vigan.02G105400.01
Multiple alignment
Variant Information
Position: Chr02:8677555..8680683 (- strand)
Length: 3129
Functional Information:
Description: Similar to Uncharacterized protein. [G7J410, Medicago truncatula]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Erg28 (IPR005352)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.29,1.48,9.87,5.28,24.13,23.67,6.71,9.43
Arabidopsis thaliana homolog: AT1G10030.1
Automatic updates:
Name: NM_001249372 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499807 (LOC100499807), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250845 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305859 (LOC100305859), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:8677555..8678014 (- strand)
Length: 460
Type: three_prime_UTR
Position: Chr02:8678015..8678082 (- strand)
Length: 68
Type: CDS
Position: Chr02:8678507..8678713 (- strand)
Length: 207
Type: CDS
Position: Chr02:8680422..8680536 (- strand)
Length: 115
Type: CDS
Position: Chr02:8680537..8680683 (- strand)
Length: 147
Type: five_prime_UTR

>Vigan.02G105400.01 class=Sequence position=Chr02:8677555..8680683 (- strand)
CAGAATTGAA CAGTAATTAA AACAGAACAG TGGTTTGCGT ATTCACAACC ACTTTTAGCT TGTAAGTTTT TGGGTGTTTG
AGACGGCATC GTTTTAGGGA AGTGACAGAG GAGACTGTAG AGGCGCAGTG AGAGTTCAGT GACGAGAATG AAGGCGTTGG
GATGGTGGCT GATAGCGGTG GGCACGCTTC GATTGGCTTC GGTGTGGTTC GGTTTCTTCG ACATTTGGGC TCTTCGACTC
GCCGTCTTCT CCAACACCAC AAGTAACTAA CTCTCTTCTC TTTCCTCATC TTGCTCCAAC ACACAAAGTT GCTTTCGCAT
TTCGTTACAC AGATTTAGGT CATTGATTCA TTCACTCGCA TCAATCAGTT GTAGTAATAA GTAGATCTTC ACTTGTTTCA
ATGGTAGATA CTGTCGGTTG AGTATGTAGT GTGTTCTGTT ACTTCATTTG CGTACTCGCC GTTTCAGCGT CTGCAACGGT
GCTTGTGTCA TTACATTTAA TGAGTTTTCT GAGGGAGGCA ATAGAAGCGT TAGATCCAAT GTATGGCAAT GAGATCTTCT
AGATCCCAAT GCTTCGGATA TTGTTAATCA TCTTTTCTCG GTTACATAAG GAAATGTCGT TGTTCTCCCT TTTGCGTTTC
ACAAGCTATC AGAATGTTTC CAGGAGGATA GGCTCTACAT CGGTTGCATT TTCCTTTTGA GGAATTCCTT TTTTCCATGG
TAACTATGTG TATGCCTCAC GCAACCTCTT CAATTTTTCC CTTTTTGAAA AATATGAACT ACTTTTTGGC AATGCAGGAG
ACGGTATTGG TTTTTATATT ACTAGTTTCC TTGAAGAAAT TGCCTGGTTT AACTGTTGGT TTACTGCGCA TTATGCATTT
GATTTCTACT TTTTAAAAAT TGGTTTAGTT TTCCAAGAAG GTAGCTGACA ACTAGTTGGG GGCTGTGCAA CGCACACATA
CGTGTGTAAA TTAAGCGAGA GGTTATGAAA AGAGAGGAAG ATGAAACATT CTGTTCTGAA TTATAATTTT GATGTTTAGC
TTTAGCTGTT CATGTTTAGT TCTTACAATT TTGTGACAAT ATATTTTCAT CTAATAATTA ACTGGGTTGT TCCAAAAGTA
TGATATATCA TTAAAAATGT CTTATATTAC AAAAGTATGA TGTATTATTA AAAATTGGCC CTTGTTTATC AATGTAAAGG
ATGGTTTTAA AATTCTGAGG TAGTCTAGAG GTTTAAAATT CTTTGATCCA TGAAATGCTA TTATCGTCTT TGATCCACGA
ATCTTGACAA TGTGGTTTTG AAATTTGTTC ACATGATATT CCCAAGGCTA TACATATCCT TTCCTGAATA ATAAGTTGTT
CCCAATTTGC TCAAACAAAG TAATTGAATC TTTCGAATTT AAAGAATGTG TTTGGATGAC CATTTAGGAT TCACGTTTTT
TAAACACATT TAGGATACTC GTGATGTAGA AGTAAGTGTG TTTGGTACGG CGTTTGGATC TTAAGTTCAC ATTATAAATG
TAAAAAATGT AAACTACTCA AAGTAGTATT TGTTTATGGA TCCACATTCG ACTTGATCCC ACATTAAACC AAACATCTAC
TAAGTATACA TTGCTTCAAG TTGATACATA CCTAGCACAA AAAAGCTCAT AAAAAATGCT GTGAATCCTT TTATCTACGT
TTATGCAGCA TGTTTATGAC ATGATTACTC AATTAATCAA AATAAACTAG GCCCAAACTT TTAAGTTTGG TTGAGTCTTT
ACTGTAAGTA ATGCTCTCAA CTGTATGAAC AGGCTTTGTT TTCACCTTTT TAAAATGATA TGATAAAGCT TTGTTGCACA
TGTGAAGAAA ATAGATTTTG CCACTTATTA ATTCGACAAC ATTCATTATA GCTTTATATA TATATTATAA TTTTAAACAT
AATCATAATG TGAATTTCAA ACTTATAGAC TAGTTTATTC ATTATTGTAG TGACTGAAGT TCATGGGCGC ACATTTGGAA
CTTGGACATT GTTGACCTGC ACCCTTTGCT ATATTTGCGC ATTCAACCTT GAAAATAAGC CTCTCTACCT GGCTACTTTC
TTGTCATTCA TCTATGCATT GGGACATTTC TTGACAGAAT ACCTAATTTA TCGCACAATG GAGATTAAGA ATCTAACTAC
TGTTGGCATA TTTGCAGGTA TGGAACTTTT TTTCTCCAGC CCTATCAAAT TGACACGGGC TACATTATTT GTCTTGAATA
TTAATCAAAA TTGTATTTAT TTATTGTTTT TTATCTATCT GCCAATTATT TTTCTATAAT CACCCTTCCC GGGTTTAATT
ATCGGTGTCG AGAATTTTTA AGCTTTCTTT TTACATCTTT ATACTTAATA TGCTTGACTA TCTCAGTTGT CTTTTCGTTG
TGTGCATTAT TTGCTACTCT CTTTCTGCTC TCCCCTAGTC AAAATATTTA AAAGTAAGGA AAAGAATCTT GTACCCCATT
ATATTCCTCT AACCTTTCGG TTCATTATTA TTCTGAAACG ACCTTGGTTT GACTTATTAT TCCTCCTATG TTGGCATTAT
TTACGGGTGA AATACATTAT AACATCTTAG TTTATTAACA GGAACATCGA TAGTATGGAT GCTGTTGCAA TGGAATTCTC
ACTCGAAAAT CCACTTGAAA CACTTTTAGT AAGCAAAAAG TGTTGGGGCA AATATACAAT AGTACAATTG GTGGTATTCG
ACGGTGTAAA ATACAGGAGA CACGCAGCTT TAGATATGTT TTCCGTGTTT TAGATTTTAT TTATCCACAT TTCAAGTTGA
TTTTGCCACC CATTGCAGTT TAAGAAGTCA TGAATGCGGC GCTTACCTTG TTAACCTATC CTTAAAATGC AAATCATTAT
TGACTTTGGT CCGTTTTGCA CTAGTTGATA TTAAGAAATG AGAACCCTGA TGTTTTAGAA TTTTGAAGAT GAATTCTATT
TTTCCATGTA ATCCGTATAA TGACCTTATA TTGCAGAAGG GATTGCGTCT GTAACTAGAA GCATGACAAA TTTGCGAACA
TAACTTTGAA ACATCATATC TAGATACAAG TTAGTACAAG GTAATTTGCC TTGACTCGTT GTTCAAAGCT CATACGCAAA
GAATCTGAG

>Vigan.02G105400.01
CAGAATTGAA CAGTAATTAA AACAGAACAG TGGTTTGCGT ATTCACAACC ACTTTTAGCT TGTAAGTTTT TGGGTGTTTG
AGACGGCATC GTTTTAGGGA AGTGACAGAG GAGACTGTAG AGGCGCAGTG AGAGTTCAGT GACGAGAATG AAGGCGTTGG
GATGGTGGCT GATAGCGGTG GGCACGCTTC GATTGGCTTC GGTGTGGTTC GGTTTCTTCG ACATTTGGGC TCTTCGACTC
GCCGTCTTCT CCAACACCAC AATGACTGAA GTTCATGGGC GCACATTTGG AACTTGGACA TTGTTGACCT GCACCCTTTG
CTATATTTGC GCATTCAACC TTGAAAATAA GCCTCTCTAC CTGGCTACTT TCTTGTCATT CATCTATGCA TTGGGACATT
TCTTGACAGA ATACCTAATT TATCGCACAA TGGAGATTAA GAATCTAACT ACTGTTGGCA TATTTGCAGG AACATCGATA
GTATGGATGC TGTTGCAATG GAATTCTCAC TCGAAAATCC ACTTGAAACA CTTTTAGTAA GCAAAAAGTG TTGGGGCAAA
TATACAATAG TACAATTGGT GGTATTCGAC GGTGTAAAAT ACAGGAGACA CGCAGCTTTA GATATGTTTT CCGTGTTTTA
GATTTTATTT ATCCACATTT CAAGTTGATT TTGCCACCCA TTGCAGTTTA AGAAGTCATG AATGCGGCGC TTACCTTGTT
AACCTATCCT TAAAATGCAA ATCATTATTG ACTTTGGTCC GTTTTGCACT AGTTGATATT AAGAAATGAG AACCCTGATG
TTTTAGAATT TTGAAGATGA ATTCTATTTT TCCATGTAAT CCGTATAATG ACCTTATATT GCAGAAGGGA TTGCGTCTGT
AACTAGAAGC ATGACAAATT TGCGAACATA ACTTTGAAAC ATCATATCTA GATACAAGTT AGTACAAGGT AATTTGCCTT
GACTCGTTGT TCAAAGCTCA TACGCAAAGA ATCTGAG

>Vigan.02G105400.01
ATGAAGGCGT TGGGATGGTG GCTGATAGCG GTGGGCACGC TTCGATTGGC TTCGGTGTGG TTCGGTTTCT TCGACATTTG
GGCTCTTCGA CTCGCCGTCT TCTCCAACAC CACAATGACT GAAGTTCATG GGCGCACATT TGGAACTTGG ACATTGTTGA
CCTGCACCCT TTGCTATATT TGCGCATTCA ACCTTGAAAA TAAGCCTCTC TACCTGGCTA CTTTCTTGTC ATTCATCTAT
GCATTGGGAC ATTTCTTGAC AGAATACCTA ATTTATCGCA CAATGGAGAT TAAGAATCTA ACTACTGTTG GCATATTTGC
AGGAACATCG ATAGTATGGA TGCTGTTGCA ATGGAATTCT CACTCGAAAA TCCACTTGAA ACACTTTTAG 

>Vigan.02G105400.01
MKALGWWLIA VGTLRLASVW FGFFDIWALR LAVFSNTTMT EVHGRTFGTW TLLTCTLCYI CAFNLENKPL YLATFLSFIY
ALGHFLTEYL IYRTMEIKNL TTVGIFAGTS IVWMLLQWNS HSKIHLKHF*