GBrowse Details

Vigan.02G044800.01

Basic Information:
Name: Vigan.02G044800.01
Multiple alignment
Variant Information
Position: Chr02:3266949..3271443 (+ strand)
Length: 4495
Functional Information:
Description: Similar to Defective chloroplast and leaves protein. [Q00M77, Glycine max]
GO: Biological Process: amine metabolic process (GO:0009308)
Molecular Function: copper ion binding (GO:0005507)
Molecular Function: quinone binding (GO:0048038)
InterPro: Copper amine oxidase, N2/N3-terminal (IPR015801)
Protein of unknown function DUF3223 (IPR021602)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.29,9.65,11.72,37.49,8.42,10.96,14 .45,11.39
Arabidopsis thaliana homolog: AT1G45230.1
Automatic updates:
Name: NM_001248478 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306718 (LOC100306718), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248478 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306718 (LOC100306718), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:3266949..3267124 (+ strand)
Length: 176
Type: five_prime_UTR
Position: Chr02:3267125..3267462 (+ strand)
Length: 338
Type: CDS
Position: Chr02:3269205..3269319 (+ strand)
Length: 115
Type: CDS
Position: Chr02:3270938..3271114 (+ strand)
Length: 177
Type: CDS
Position: Chr02:3271115..3271443 (+ strand)
Length: 329
Type: three_prime_UTR

>Vigan.02G044800.01 class=Sequence position=Chr02:3266949..3271443 (+ strand)
AATAGATTTA AATGTAACCC GTTGGGGGAA GAAAATGGGT AGAGGAGAGG GAGCTGAAGC TGCTTCTTTA TCCTAAACTT
GAGTTTCCCG CAGAGCTGAG AGAGCGAGTG ATGAATAATA GAATACGATG TTAGATGGAT AATTGGGTGA GCTGAGTGAT
AAATTCGACT TCAACCATGG CTTTGCCTTC TTTACTACCC AAAACGGCAC CGCATCTTCT TCCCCTCACA AACCCCTTCT
CTTCCTCTTC CTCTCCCTCT ACTCTCATCT TACCTTTCCG CTTCCACTTT TTCTCTCACC TTCCTCCTCT CTCTCTCCTC
AAAGCCGCTT CCTCCGCCGG CGATAGTTTG CGCAGCAAGC CCCTCATGTC CCAGAGAAGG GGGATTTTGG AGGAACACGG
CAGCCAAGCC TTTGAGGAAG ACGACGACGA CAAATGGATT GACTGGGAGG ACCAGATTTT GGAGGACACC GTTCCTCTCG
TTGGTTTCGT CAGGATGATT CTCCATTCTG GACAGTATGT CTCTCTTATG AAACCAATTT CCTCGCTTTA CTTTACTTTA
TGCCTATATT TGCATACTAT GACCGTATTA TGCAATTGCA GTTGAAACTA CTAATATATC AGTTAGTCTA ACTCGAATCC
AATGCAGATC ATATACTAAC AGTCTAACTC TACCGTTTGA GTGTTTTAAT CTCTCCACAT CACAATAAAC AGTTCAATCA
TAAGCGAGTA CGCTCAAGAC CTGCTCTGAA GTTTCATATT GATTCCTCTT ATATGATTTT AGAACCATAC CTTGAGAAAG
AGATGCAAAA ATTCGTAAAC AAGACATAGG TGGATTTTTT TAAGCAAGTT TGGAGATTCA TGTATCATGG GAGTCTTCAA
TTTCATTCTC CATCTTAATT CCTTGTCACC TCTTGTATTT GAATCTGGGT GTTCAGAGTT CTTAAATAGC TACTATTGTG
GTGCTATTGC TTTGTGAGTT TCCCTGGATT CACAATTGTT CACCGTCTTC CATTGTGGCT GCTATGAGTG TCATGGTTGT
AGCATGCATC CTCTGGTTAT CTCTTTCCGA AAACTAAGTG TGAGTCTAAG TATACTTTAG ATAAAAATGA GTAAGTAGTG
CAGCATATAA GGATACATAC AAGGATGAGA ACCCATAAAG AGGTTTAAGG TTTTGGGTTA AGAATGATAT CAATCCCGTC
GGATTCATAC TTTATTGGTG CTGTGTGTAA ATTTCTTTTC TCAATAAATC GCCTATTGAA ATTTTTTGAG TTAATATTAT
GCCAATTTTT ATTCATTTTA TATTTATTTG CCTACAGCTT AAATTGTGAT GTATATATAA TTGATATATA TATATATATA
TATATAGTAT ATTTAACCTA TTATGCGACT TTTTCACTAT TTGCTCACAG TGGTATCCAC CACTGGATAT AACAGTTTAT
TGACTTTCCA CCGTTTTCTG CTATCCACAA CTGATGATAC TGGGTGTTTG AACTGATGAA TCCCATCACT GTATGCATCT
AGGGTTATGT CCATAACAAT ATAACTGGAA ACAAGAAAAG CAAGGAGTGA GTACTTTTAT ACGGGTGCAG GAAATGCCCT
CTTTGTTGGT AACTGACACC GTCTTGTGTG TCAGGCCTAA ATATTGAGAT TGATTTTTAA GTGCTCTGCC ATTTTAAATG
TTGTCTGGGT TTCAAACTCA GAACCTTGGC TATATGAAAA GGGCCAGGGA AGTGGGAATC TTTTTTATCC AAACTTCCAA
ACCACTTTTG GGCTTTCAGG TGATTTCAAT TTCCAGAAAT GAAATCCATA GCTGTAATAG CAGTCAAATT GATAAAGACG
ATTTGGATAT AGAAGATGAT GATTAATGAA ACCTATCTAG GAAACTTGTA TTTGACATTT TGTTGGTATT TACTTGTATG
TTTAGACACA TATGGCTTTT TCTTGCTTTT TTATGAATGT ATGAATTTTG AGAAATTTCT ATAATTTTTA TAATGACGTA
TATGTATACT ATATAACAAT TTTCAGAGTT GTTCTTATCC CACCATTTGT TATCTCTCTA TAGAGTTTAT GTGGCCAGTT
GCTATGCGCT GCTATTTGGG ATTTAAAATA CTGATGGATC TGCATACATG TTTTGCTTTC ATTTATCTTG GAAATTCTGT
TGATAGCTTG TTACAAATTC TTGCCTCAGA TATACATGTC CTGGTATCGT TTCTCTTGGA ATTCTGATAA TAACTTGTTG
CAAATTCTTG TCATAGATAT GAAAGTGGAG ATAGACTAAG TGAAGAGCAT GAGAAAACCA TTATTGAGAA GCTGCTTCCC
TTTCATCCAG AATTTGAGCA AAAGATCGGA TGTGGAGTTG ATTATATCAC GGTATCTCTC TATCACACAC TTTTCTTCTT
CTTGCTCAAC TCGTATTCAC ACACAATATA TGCACTAATC TTGTTTACAA AAGGCCTTCC CAATATTACT TTTCTTTGTT
TTTTTTCATT TGGGTCCAAT AATGATGAAT TTTATAGTTT TAGCAGTCTC TTAGATTAGA TATGTGGCCG TGACATAAGG
TGTTCGTCCA TTAAAAATTT TTAAATGGCT CTGGTTTATG ATGGGTGATG GAAAGCTAGC TTAACTGTGG TTAGCCGGTT
TATGTGAGAC GGTGGGGTGC TTTCATTGCA TTTGCAGCCT CCATCACCTT CATTGTGTTG GATGTGAGAC AGTGTGGTTA
GTCCTGTCCT GTGTCGTCTA GTAATGCAGC CTAAGTAGCG ATTATAAGTT TTGGATAATT TACAACTTAT TAGGTAGATT
TGGAATTTAG TTTGGTCCTG AGCTCAAATT CCAATAGTGG GGACCCACTA ATAGTAGGAT CTGTCTCTGA CGAAATGCAG
GGTGCAATAG TGCAAATTGG TTTATTTCTG GGAAAATGAA GTAATTGGCT TTTGTTAATT CATGGAGTGC TATCTGATTG
ATTCTGTTTT ATGAAAAAAT TATGCCACTG ATTTGTTCAT CATTGGTGAT CCACTCTACA TTTCACTCGG CAAAATGGTC
CCTTGCAATT AGAGAACTCC ATCCTTAATA TTGTTAATAA CTGAACTTAA GTATCTCTTC TGTCTCTCAG GCTCTGCTAC
AGATAAGTTT TTTCAGGATT TTCATACTAA ACTTGTATTG ATTTTTCCCT TTCTAGTAGG CCAGTAAATT TAGTGCCCCA
AATTCATCTG CTTTGCTTAA TCTTTGTCTC ATTCCACGGT AGTTATGAAT TCACATAATA CATGTACTTA TTAGAAATGT
TTAGCCCCGT AAAAGCCTTT TGCTGCTAGC CATGTGAAGT ATGTAAAAAA AACCAATTAT ACGGAAATAA ACCTGAATTT
TAACCATATT TAAAAAAAAA TCCAAATAAT GTAAATAGGG TTTTAAACCA AGATTTCTAC ATTTTAACAG ATAATTCAGT
TAACTGGTTT TAAAAATTTG ATTTTGACTT AACAGTTGGC TTTTAAAACT GGTTGTGGCT AATATTTTAG CCAAAGCTGG
TCCTAGACAA GTTTTAAAAC TAATTTTGGT TAAAAACTCA ATTGGGATAA AAACCAGTGG AAAATTAGTT TAAAACTGGT
TCGACCAAAA CCAAACGAGT TTTAAAATCC GATACTTATA ATTTGTTTGA TTTGAACTGG TTTTACATTA TATAAAGCCC
TCCCGGCTAG CCAAATATGG CCTTTGACCT TGGTGTTACC ATCACGTGTG TAATAATTTT ATCCCTGTCT TAGCTGTTGA
AAAGTAAGGT GCATAGTGCA TTGACTGGCT TATTCTCTCT AACTGTCTGC CATCACTTTC CGAGATTAGC TTTTGAAAAA
AACTCATAAA AATCAATAAA ATATGTATTT AATGCCTTCA TTGTCTCTTG AATTGTATTA CATCCAATCT GGTTTTTTGG
GGGTAAACTA CACTTGGTTT GGATTTTTAC GTGTTGCTGA AAGTTTTTGG TTCGCTTTAA AATTGACAGA TTGGATATCA
TCCTGATTTT GAACGCTCAA GGTGTTTGTT CATTGTTCGA CAAGATGGTC AAGTGGTTGA TTTTTCATAT TGGAAATGTA
TAAAGGGCTT GATCAGAAAG AACTATCCTT TATATGCAGA CACTTTCATT CTCAGACATT TCAGGAAGAA AAGTCGTAAT
TTGTGAAGTT AAAGCTGTAT TATGCTGGTT GGACCATTTT ATATTAGCGT TCGCTTCTTT TTTAAATCTT TTTTTTTTTG
TTATTTTCGT GTTTGGTAGC ATGGTATTTT AAAGGTCAGA GAAAAATGGT GCACAATTTT TTGGAGTTCT GAAGAGTGTT
TGATATTTAG CGACTCACTA CAAATGATTG CCACTCAATG CCGGAATTTG TTCCCATTTT ATTGACAATA TTCGTAGTGA
TATAAAAATA TGGGAATGTA GATGTAGATG ATATTGTACC TTTCAGTGCA TATATTTTTT AAATTTGTAG AATTGAAGTT
CATTTTATAC CGTTT

>Vigan.02G044800.01
AATAGATTTA AATGTAACCC GTTGGGGGAA GAAAATGGGT AGAGGAGAGG GAGCTGAAGC TGCTTCTTTA TCCTAAACTT
GAGTTTCCCG CAGAGCTGAG AGAGCGAGTG ATGAATAATA GAATACGATG TTAGATGGAT AATTGGGTGA GCTGAGTGAT
AAATTCGACT TCAACCATGG CTTTGCCTTC TTTACTACCC AAAACGGCAC CGCATCTTCT TCCCCTCACA AACCCCTTCT
CTTCCTCTTC CTCTCCCTCT ACTCTCATCT TACCTTTCCG CTTCCACTTT TTCTCTCACC TTCCTCCTCT CTCTCTCCTC
AAAGCCGCTT CCTCCGCCGG CGATAGTTTG CGCAGCAAGC CCCTCATGTC CCAGAGAAGG GGGATTTTGG AGGAACACGG
CAGCCAAGCC TTTGAGGAAG ACGACGACGA CAAATGGATT GACTGGGAGG ACCAGATTTT GGAGGACACC GTTCCTCTCG
TTGGTTTCGT CAGGATGATT CTCCATTCTG GACAATATGA AAGTGGAGAT AGACTAAGTG AAGAGCATGA GAAAACCATT
ATTGAGAAGC TGCTTCCCTT TCATCCAGAA TTTGAGCAAA AGATCGGATG TGGAGTTGAT TATATCACGA TTGGATATCA
TCCTGATTTT GAACGCTCAA GGTGTTTGTT CATTGTTCGA CAAGATGGTC AAGTGGTTGA TTTTTCATAT TGGAAATGTA
TAAAGGGCTT GATCAGAAAG AACTATCCTT TATATGCAGA CACTTTCATT CTCAGACATT TCAGGAAGAA AAGTCGTAAT
TTGTGAAGTT AAAGCTGTAT TATGCTGGTT GGACCATTTT ATATTAGCGT TCGCTTCTTT TTTAAATCTT TTTTTTTTTG
TTATTTTCGT GTTTGGTAGC ATGGTATTTT AAAGGTCAGA GAAAAATGGT GCACAATTTT TTGGAGTTCT GAAGAGTGTT
TGATATTTAG CGACTCACTA CAAATGATTG CCACTCAATG CCGGAATTTG TTCCCATTTT ATTGACAATA TTCGTAGTGA
TATAAAAATA TGGGAATGTA GATGTAGATG ATATTGTACC TTTCAGTGCA TATATTTTTT AAATTTGTAG AATTGAAGTT
CATTTTATAC CGTTT

>Vigan.02G044800.01
ATGGCTTTGC CTTCTTTACT ACCCAAAACG GCACCGCATC TTCTTCCCCT CACAAACCCC TTCTCTTCCT CTTCCTCTCC
CTCTACTCTC ATCTTACCTT TCCGCTTCCA CTTTTTCTCT CACCTTCCTC CTCTCTCTCT CCTCAAAGCC GCTTCCTCCG
CCGGCGATAG TTTGCGCAGC AAGCCCCTCA TGTCCCAGAG AAGGGGGATT TTGGAGGAAC ACGGCAGCCA AGCCTTTGAG
GAAGACGACG ACGACAAATG GATTGACTGG GAGGACCAGA TTTTGGAGGA CACCGTTCCT CTCGTTGGTT TCGTCAGGAT
GATTCTCCAT TCTGGACAAT ATGAAAGTGG AGATAGACTA AGTGAAGAGC ATGAGAAAAC CATTATTGAG AAGCTGCTTC
CCTTTCATCC AGAATTTGAG CAAAAGATCG GATGTGGAGT TGATTATATC ACGATTGGAT ATCATCCTGA TTTTGAACGC
TCAAGGTGTT TGTTCATTGT TCGACAAGAT GGTCAAGTGG TTGATTTTTC ATATTGGAAA TGTATAAAGG GCTTGATCAG
AAAGAACTAT CCTTTATATG CAGACACTTT CATTCTCAGA CATTTCAGGA AGAAAAGTCG TAATTTGTGA 

>Vigan.02G044800.01
MALPSLLPKT APHLLPLTNP FSSSSSPSTL ILPFRFHFFS HLPPLSLLKA ASSAGDSLRS KPLMSQRRGI LEEHGSQAFE
EDDDDKWIDW EDQILEDTVP LVGFVRMILH SGQYESGDRL SEEHEKTIIE KLLPFHPEFE QKIGCGVDYI TIGYHPDFER
SRCLFIVRQD GQVVDFSYWK CIKGLIRKNY PLYADTFILR HFRKKSRNL*