GBrowse Details

Vigan.02G038200.01

Basic Information:
Name: Vigan.02G038200.01
Multiple alignment
Variant Information
Position: Chr02:2824646..2828498 (+ strand)
Length: 3853
Functional Information:
Description: Similar to Uncharacterized protein. [W9RT50, Morus notabilis.]
InterPro: Histone deacetylase complex subunit SAP30/SAP30-like (IPR024145)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,0.08,11.80,9.90,14.71,7.52,10.5 2,14.31
Arabidopsis thaliana homolog: AT1G19330.3
Automatic updates:
Name: NM_001255043 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100787225 (LOC100787225), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255043 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max histone deacetylase complex subunit AFR2-like (LOC100787225), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255494 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100806535 (LOC100806535), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255494 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100806535 (LOC100806535), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255717 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100784573 (LOC100784573), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255717 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max histone deacetylase complex subunit SAP30-like protein (LOC100784573), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361470 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100806535 (LOC100806535), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001362386 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max histone deacetylase complex subunit SAP30-like protein (LOC100784573), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:2824646..2825011 (+ strand)
Length: 366
Type: five_prime_UTR
Position: Chr02:2825012..2825212 (+ strand)
Length: 201
Type: CDS
Position: Chr02:2826328..2826454 (+ strand)
Length: 127
Type: CDS
Position: Chr02:2826951..2827093 (+ strand)
Length: 143
Type: CDS
Position: Chr02:2827209..2827415 (+ strand)
Length: 207
Type: CDS
Position: Chr02:2827416..2828498 (+ strand)
Length: 1083
Type: three_prime_UTR

>Vigan.02G038200.01 class=Sequence position=Chr02:2824646..2828498 (+ strand)
CTGAAAACCA AACCCACCAT GATGTTCATG CCGTAACCTC GGCTGTGTCC AAGCTCATGA TTAAAGAGCC CACCCTCCAT
TGCTGACGTG GCGATATCTG ATTCGGCCAT TTCGTCTCGT CGGGATTCAT ACCAACACAC CCAATTAACA ATACCAGTCA
CTCTCACTCA TTTTTCTCTC TCTTTCTTTC TCTTTCTCTC TCAACTTGTG TTTTTTCTCT ATGCAGAATT TCCCCAATTT
CTCCACTACC CTATCTCTTC TGCTCCTCAA ACTCCCACAT TCACACCCAG CAATGCACGA TCTTCCGTAC GAATGCAATT
TTGATATTTA ATTTCCGACT TTTCCCTTCT TACCGCTGAA TTAGAAATGC TAGAGGCAAT GGAAAGCTCA GTCAATGGTG
GGTTCTCCCA TTTGCAGAGC TGCGGAGACA GCAGCGAAGA GGAGTTATCG GTGCTGCCAC GTCACACCAA AGTCGTGGTA
ACCGGAAATA ACCGCACTAA ATCGGTGCTC GTTGGTCTTC AAGGTGTTGT TAAGAAAGCC GTTGGTCTGG GAGGATGGCA
TTGGCTGGTG ATTTTCTCTT TCCCATCAAA ACTACACTGC GGATTTTTTA TTTCTTTATT CTAATTTTGG TTACTAATGT
CGTTTGTTTG CATTGTTGTG AAACTGCGTA GTTCTTCAAA CCAATGTCTT ATCCCGGTCA ATTTTGGTAT TTTCTGGTTT
TTTATTCCGT CACTCGTTTG ATTCTGCTCA AATTTAATCG CTTTCAAGCC CTACCTTTGG TGGTGTCTTA TTATTTTCGA
AAACTAGTCA GACGGGTTTT ATGTTAATCC GTTCTGAAAC CTACTGCTTG ATTTGTTTTC TCAATCATTG ACTTGACTTT
TAATTTATAC TTTCAAATGC TGGGTTCTTT GTGTTGCGGT TTGGATAGTT TTTGTCCTCT TATATGTGTT TTGAGTCGCA
ATTCTGAATC ATTACTAGTG GGTATTCGAT GCATGTCTTT CATCGCCACC GGATCTGGTG TTTTATGGGC TGCTTTACAA
GGAACAGCTA CTGGTTGGGT CTTTCAATTG CTTTTATTTA TTGGCGAAAG TAAATGAAAT TTCCATTGCT ATGGTTTGTG
GTATTGATTG ATATTGATAA TTTGAGGTCA GAGCTAAGAA TGAATAATTT ATGCCATTGT TTCCTATTTA TGAAAACCTT
TTTTTTAGTT TTCTAAACTG ACTATGATTT TCTATTTGGG ATTGTTAATT TTGTTGCATC TTCTTCTTCT ACTTCTTCTT
CTTCCGGGAG ATAAAGTACA TAATTACTGT TCTGGGCTTA TGCTTGTATT AAAATTATGC TATTGATAGT CATTGAATCA
TAGACGCCTT TTGTTCTTTT CATTCCGGCG AGAGAGTAAT TGTTTTTCTT CCATCAGAAT CCGTGGTGTA TTTTCTCTAA
AGATTTAATC TTCCACTGAT TCGCAATTGT TTCTTTTTTC CCCGATATCC CCTTTTAATT CCTTTGTTTG TATACACATA
ACTGAATGAT TACGTGAACA ATTTGCATTC AAATCAAGCT AGTCTGGGGG CCTTCTTCTA TGATATTTAA ATTTAAACAA
TATTTTATTA TCGAAACCGG GTTAGCAGTT GCTGTTAGAC GATTATTTTA AGCTGTTCTG AATTTTTTAT ACACAAATGC
AGGTTCTTAC CAATGGTATT GAAGTGAAGT TACAAAGAAA TGCCCTCAGT GTAATTGAAG CACCCACGGG TAATGAGGAA
GATGATGAAC TGGAATTTGA AAATATGCAG TGGAATGGAT CTGATATGGG TGAGTCTACA CTTTACAGTT ATTAATCATC
TTCTTTGCTT TCTGCTACTG GTATTATTTA GAAACATCCT CTTCAGTTTT GAGGAAACGA ACCCTTAATA ATATTTAACG
TATAAAAAAA TGGAAAATAT GTATTGAGTG GCGAGATTTA CAAACTGCCC TCTCCTGTTT TTATCAACTT TCAGTGATCC
ATGTTCGGTG TTTTGATCAA GCATTGAACC TTCCATGTTT AATGGGGTTG CCATTGTGTT TTTTGCTACA CTGAAAGTAG
GCATAAATGG GAGATGCTGT GATATTTTTT TGCTAATTTA TTGTTGTTTT GGCATTCATA TCCGCGCGTT TCCAAAGTGG
TAGAGGTTGG TAACATTGGA TCCGTTATGT CTTCTCCTTT TGCTTTTACT ATCTCTAAAG TTCTGGTGTC TTACTTTAAT
CCTGGTAGAC CCCACCACTT TTCTATTTTT TATTGTGTAA AATTGTGCTT TGTTTGATTT ATCAGCATCG GACGACACAC
AGAAGTCCCA CAAACCGAGG CACAGAATGC ATAGAACATT GGGATCATCT CATCACAAGA CCATGAGTAG GTCCTTCTCT
GGCGATTCAC ACTCAAAGGG GTCCGTTTCT ATGCCTCATG GGTCCGCGGT ATATTAACTT TATTGTCTTT CTTAATTTGT
TCCCCTCCCA CTTACTATCG TACATTGTTC ATTCTTTAGT ATTTTATTTG TTAACGTTTT CTAAAATATT ATATTTTCGA
TAGAAGGTGG ACTTGAGCAA ACTTGAAATG GCTGCATTGT GGAGATATTG GCGACATTTT AATCTTGTAA ATTCCTTTGA
ACTAACTGTT TGGTTACTGT CTCTCGTAAA AGATAGTTTT GGCACTGTGT GTTTATGTCC CCGTTGTACT TACTCCTTGA
AATGGATCTG TAGGTGGATG CGGTCCCAAA CCCATCAAAA GAGCAGCTAG TAGACATTGT TCAGAGGCAT TTCATGTCAC
AGGTATCTCA AAATTACTGA TTGCATATTC GTTTGTCTTT GATAGTAATC GTTCAAATAT TCTGTAATTC GTTCATGCAG
TTTCATAGTG GTGAACTGCA TATACGATCC TAATAACTTC CATAGCATGC TAATCAACCT ATTATTAAAT TTTGAAAATA
CGATTTTTTC TTATCTTTAA ATGTCATGTC TAATATTGTT AATATATAGT GAATAATTAT TATTTATTTA AAAAAATGTA
GTACTTTATT TCTTAGATAT AGTTTTAAGT CATGTGATTG AATTTGTTAT TTTTTTTTAT CTCATCATAC TGTAATTCTT
ACCAAGTAAT GTATGTGACT TTGGTGCAAG TATGTCACCA CACGAACAAA ACAATGCCTT AAACATGCAT GGTGTATGTG
TATGTATATG CTCAAGTGTT TCTCTGTAAG TTTGACGAAG AACTTTATCA CTATAGTCTG AAATTGATTT TGTGTTGTAT
GAAGCAAATA GACGAGTTGC AAGTGATTAT GGGATTTGTC CAAGCTGCAA AGAGGCTCAA GACAGTGTGC AAATAGATGA
AATGAAGCGA GAAATGATAT TTGAAAAGTT CAAGTATCTA TGCTAACAAA GATAATGTAT GTAATATCCA CTTCCCATCG
TATTATGCTA TCGGTGATTT GTAACTTTCT GATATAGTAG AGTAGGTTAG TAATTTGAGG TTATAGAGGT TCTTACTCTT
TTGTAGCCAC CCCAGTTGTG TAGATATAAA TGACATTGCA ACTGGATCAT AGGGAAGTCT CCCGGGCTTT CTTTACAACT
TGATTCAATG TATTGCTGAT CTGGGAAGTG GGTTTTCAGA GACCTTAATG TATATATATT TTCAGTTTCT TTCAACTTTG
ATTTGTCATA CACGAGTTCT TGTGTCGTCT ATCATGTCCG GTGAAGTAGC ATAGTATATA GTTTGCGACC ATCTTAAAGT
GGCTGAAATT GTGGTTAACT AGCTTTAAAC ATTTGTGTGC TTTAAAAGGG AAACATACAT TGTATATTCG AATTTATACT
TAATTAATTG TGG

>Vigan.02G038200.01
CTGAAAACCA AACCCACCAT GATGTTCATG CCGTAACCTC GGCTGTGTCC AAGCTCATGA TTAAAGAGCC CACCCTCCAT
TGCTGACGTG GCGATATCTG ATTCGGCCAT TTCGTCTCGT CGGGATTCAT ACCAACACAC CCAATTAACA ATACCAGTCA
CTCTCACTCA TTTTTCTCTC TCTTTCTTTC TCTTTCTCTC TCAACTTGTG TTTTTTCTCT ATGCAGAATT TCCCCAATTT
CTCCACTACC CTATCTCTTC TGCTCCTCAA ACTCCCACAT TCACACCCAG CAATGCACGA TCTTCCGTAC GAATGCAATT
TTGATATTTA ATTTCCGACT TTTCCCTTCT TACCGCTGAA TTAGAAATGC TAGAGGCAAT GGAAAGCTCA GTCAATGGTG
GGTTCTCCCA TTTGCAGAGC TGCGGAGACA GCAGCGAAGA GGAGTTATCG GTGCTGCCAC GTCACACCAA AGTCGTGGTA
ACCGGAAATA ACCGCACTAA ATCGGTGCTC GTTGGTCTTC AAGGTGTTGT TAAGAAAGCC GTTGGTCTGG GAGGATGGCA
TTGGCTGGTT CTTACCAATG GTATTGAAGT GAAGTTACAA AGAAATGCCC TCAGTGTAAT TGAAGCACCC ACGGGTAATG
AGGAAGATGA TGAACTGGAA TTTGAAAATA TGCAGTGGAA TGGATCTGAT ATGGCATCGG ACGACACACA GAAGTCCCAC
AAACCGAGGC ACAGAATGCA TAGAACATTG GGATCATCTC ATCACAAGAC CATGAGTAGG TCCTTCTCTG GCGATTCACA
CTCAAAGGGG TCCGTTTCTA TGCCTCATGG GTCCGCGAAG GTGGACTTGA GCAAACTTGA AATGGCTGCA TTGTGGAGAT
ATTGGCGACA TTTTAATCTT GTAAATTCCT TTGAACTAAC TGTTTGGTTA CTGTCTCTCG TAAAAGATAG TTTTGGCACT
GTGTGTTTAT GTCCCCGTTG TACTTACTCC TTGAAATGGA TCTGTAGGTG GATGCGGTCC CAAACCCATC AAAAGAGCAG
CTAGTAGACA TTGTTCAGAG GCATTTCATG TCACAGGTAT CTCAAAATTA CTGATTGCAT ATTCGTTTGT CTTTGATAGT
AATCGTTCAA ATATTCTGTA ATTCGTTCAT GCAGTTTCAT AGTGGTGAAC TGCATATACG ATCCTAATAA CTTCCATAGC
ATGCTAATCA ACCTATTATT AAATTTTGAA AATACGATTT TTTCTTATCT TTAAATGTCA TGTCTAATAT TGTTAATATA
TAGTGAATAA TTATTATTTA TTTAAAAAAA TGTAGTACTT TATTTCTTAG ATATAGTTTT AAGTCATGTG ATTGAATTTG
TTATTTTTTT TTATCTCATC ATACTGTAAT TCTTACCAAG TAATGTATGT GACTTTGGTG CAAGTATGTC ACCACACGAA
CAAAACAATG CCTTAAACAT GCATGGTGTA TGTGTATGTA TATGCTCAAG TGTTTCTCTG TAAGTTTGAC GAAGAACTTT
ATCACTATAG TCTGAAATTG ATTTTGTGTT GTATGAAGCA AATAGACGAG TTGCAAGTGA TTATGGGATT TGTCCAAGCT
GCAAAGAGGC TCAAGACAGT GTGCAAATAG ATGAAATGAA GCGAGAAATG ATATTTGAAA AGTTCAAGTA TCTATGCTAA
CAAAGATAAT GTATGTAATA TCCACTTCCC ATCGTATTAT GCTATCGGTG ATTTGTAACT TTCTGATATA GTAGAGTAGG
TTAGTAATTT GAGGTTATAG AGGTTCTTAC TCTTTTGTAG CCACCCCAGT TGTGTAGATA TAAATGACAT TGCAACTGGA
TCATAGGGAA GTCTCCCGGG CTTTCTTTAC AACTTGATTC AATGTATTGC TGATCTGGGA AGTGGGTTTT CAGAGACCTT
AATGTATATA TATTTTCAGT TTCTTTCAAC TTTGATTTGT CATACACGAG TTCTTGTGTC GTCTATCATG TCCGGTGAAG
TAGCATAGTA TATAGTTTGC GACCATCTTA AAGTGGCTGA AATTGTGGTT AACTAGCTTT AAACATTTGT GTGCTTTAAA
AGGGAAACAT ACATTGTATA TTCGAATTTA TACTTAATTA ATTGTGG

>Vigan.02G038200.01
ATGCTAGAGG CAATGGAAAG CTCAGTCAAT GGTGGGTTCT CCCATTTGCA GAGCTGCGGA GACAGCAGCG AAGAGGAGTT
ATCGGTGCTG CCACGTCACA CCAAAGTCGT GGTAACCGGA AATAACCGCA CTAAATCGGT GCTCGTTGGT CTTCAAGGTG
TTGTTAAGAA AGCCGTTGGT CTGGGAGGAT GGCATTGGCT GGTTCTTACC AATGGTATTG AAGTGAAGTT ACAAAGAAAT
GCCCTCAGTG TAATTGAAGC ACCCACGGGT AATGAGGAAG ATGATGAACT GGAATTTGAA AATATGCAGT GGAATGGATC
TGATATGGCA TCGGACGACA CACAGAAGTC CCACAAACCG AGGCACAGAA TGCATAGAAC ATTGGGATCA TCTCATCACA
AGACCATGAG TAGGTCCTTC TCTGGCGATT CACACTCAAA GGGGTCCGTT TCTATGCCTC ATGGGTCCGC GAAGGTGGAC
TTGAGCAAAC TTGAAATGGC TGCATTGTGG AGATATTGGC GACATTTTAA TCTTGTAAAT TCCTTTGAAC TAACTGTTTG
GTTACTGTCT CTCGTAAAAG ATAGTTTTGG CACTGTGTGT TTATGTCCCC GTTGTACTTA CTCCTTGAAA TGGATCTGTA
GGTGGATGCG GTCCCAAACC CATCAAAAGA GCAGCTAG

>Vigan.02G038200.01
MLEAMESSVN GGFSHLQSCG DSSEEELSVL PRHTKVVVTG NNRTKSVLVG LQGVVKKAVG LGGWHWLVLT NGIEVKLQRN
ALSVIEAPTG NEEDDELEFE NMQWNGSDMA SDDTQKSHKP RHRMHRTLGS SHHKTMSRSF SGDSHSKGSV SMPHGSAKVD
LSKLEMAALW RYWRHFNLVN SFELTVWLLS LVKDSFGTVC LCPRCTYSLK WICRWMRSQT HQKSS*