GBrowse Details

Vigan.02G025100.01

Basic Information:
Name: Vigan.02G025100.01
Multiple alignment
Variant Information
Position: Chr02:1836038..1838121 (+ strand)
Length: 2084
Functional Information:
Description: Similar to Uncharacterized protein. [I1K7H3, Glycine max]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.77,20.35,21.96,0.17,1.33,9.56,11.1 5,0.75
Automatic updates:
Name: NM_001255002 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527629 (LOC100527629), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255002 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative expansin (LOC100527629), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:1836038..1836292 (+ strand)
Length: 255
Type: five_prime_UTR
Position: Chr02:1836293..1836431 (+ strand)
Length: 139
Type: CDS
Position: Chr02:1836995..1837316 (+ strand)
Length: 322
Type: CDS
Position: Chr02:1837412..1837718 (+ strand)
Length: 307
Type: CDS
Position: Chr02:1837719..1838121 (+ strand)
Length: 403
Type: three_prime_UTR

>Vigan.02G025100.01 class=Sequence position=Chr02:1836038..1838121 (+ strand)
GGAAATTGTC AGAGAAGAGA ACGTGGGAAT AATTGAATGA CATCTAGAAT TGTACTGTTC ACACACATGA ATTTAATAAT
GTAATAAATG ATAATTCACA TGTGTCATCT TACTCTGGTC CCTTATTTAA AGACTGCTGA TTTGGTGTTG AGAAATGACA
ATAAATGTAA CTAAAACAAA TAGAAATCCT CTCACTCACT GCACACTACT CTTTCAATTT AGTCTCCAAC ATTCTTAGCT
TGAGGCAATA TACTAATGGC CTCTGTGATG TTTGTTTTGG TAAGCTACCT CATATTTTGT TGTTTCTCAG TTCACAGTTT
TGCCTTCTCA CTTTCTGGAT GGACCAATGC ACATGCCACC TTTTATGGAG GTAGTGATGC CTCTGGGACA ATGGGTGAGT
CAATGTACCT TCTCACATTA TCCATGTAGT TTCATTTTTC TGTCTTTTAT TCCCTTACTT CTTTTTGCTT GCATATCTCT
TATGAAGAGA ACTAAGGATA ATGAGAGTTT ATTGGATTTA AGCGATTACA AATCTTATAG GATTTATTGT ATTTAAAATT
TTGTGTTATA AATCGATTTT ATAAGATTGT ATTAGGTGTA TTTCATTCTA ATTTAATTTT AAAAACCTAT TTATAAATAC
AGTTTGTATC TATTTATATA ATTTAAATTA GTATTATTTC TAATCGATTG TTAAAGACAG GATGTGATAC CATGTTAATG
TTCAACTCTA CAAAACTAGT TTAAAAAATG AAATTTTCGT TAACTTGTAT ACTTTAAATT GGTTTTGTAT CTCTTTTAAT
CATTTAATGT TTAATCTCAT GTTTCAGAAG ATATAAACAA CCGAAAACCT CAGTAATTGA GTGTAATACA CCAATTGTAT
TTGATAAAAA CTGTGTTTTG ACGAGAATCC AAATTTAATT TTCCCTTTTA CTGAAAGTTT GCATGCGTGA GATGCAGGAG
GAGCATGTGG GTATGGGAAT CTGTATTCAA CAGGGTATGG GACTGATACA GCAGCACTGA GTACTGCATT ATTTAACGAT
GGAGCTTCGT GTGGGGAGTG TTACAAAATC ATGTGCGATT ATCAAGCAGA TCCGAAATGG TGCTTGAAAG GAACATCTGT
AACCATAACT GCCACAAACT TCTGCCCTCC CAATTTCGCT CTGCCAAGCA ACAACGGTGG CTGGTGCAAC CCTCCTCTCA
AACACTTTGA CATGGCTCAA CCCGCATGGG AAAAGATTGG TATCTATAGA GGAGGGATCG TGCCCGTTTT GTTCCAAAGG
TTTGAACTTT ACTCAATATC TTATTCTTTA TTCAAAGTTG AAGCTTCATT TCCGTAATAA GTTGTAATTA ATCAAACCAA
AACTTACTGT GCAGGGTTGC ATGCACGAAG AAGGGAGGGG TTAGGTTCAG TGTGAATGGG AGAGACTACT TTGAGCTTGT
GCTGATCAAC AACGTGGGAG GAGCTGGATC TATTCAATCT GTGTCCATCA AAGGCTCAAA AACTGGGTGG ATGACTATGT
CAAGAAATTG GGGTGCTAAT TGGCAATCCA ATGCCTATTT GAATGGTCAA TCTCTGTCTT TCCGAGTCAC AACAACCGAT
GGTGTCACCA AACTTTTTCA AAATGTTGTT CCATCCAATT GGGCTTTTGG CCAGAGTTTC TCTACCAGTG TTCAGTTTTA
GGACGACAAG GGTTATTGAG TTGTGGGTTT TGGAGTTTCC GATGAACGAA ACGGCAGAGG CGTGCCTGTT ATTTTGCCGG
AGCAGCCCGC CACCCTTATC TTCTGCTTTT GAATTTGGTA AATTTGGTAA ATATGGTACG ATCGAACCCA TCAACTTGAT
GCCCATGATG AAGAACCCTA AATAGACATT CCAATTGCCT GAGTTATTAC AGAGAATCAT TGTTAGTTGT TGTGTGATTC
CTGTATAAAT GAACTTCTTC AGAGTTTGAA TCATACTATG AACTATAAAG TGCTGCTCTA TTCAGAGAAT TCGGAAAGGG
GAACACTCTA ATTCCCTGAA ATTCTATATA TTTGTAAGTC TAGGAGCTAT GTATTGCTTT TGCTAATTTG TTCTTCAGTT
TCAC

>Vigan.02G025100.01
GGAAATTGTC AGAGAAGAGA ACGTGGGAAT AATTGAATGA CATCTAGAAT TGTACTGTTC ACACACATGA ATTTAATAAT
GTAATAAATG ATAATTCACA TGTGTCATCT TACTCTGGTC CCTTATTTAA AGACTGCTGA TTTGGTGTTG AGAAATGACA
ATAAATGTAA CTAAAACAAA TAGAAATCCT CTCACTCACT GCACACTACT CTTTCAATTT AGTCTCCAAC ATTCTTAGCT
TGAGGCAATA TACTAATGGC CTCTGTGATG TTTGTTTTGG TAAGCTACCT CATATTTTGT TGTTTCTCAG TTCACAGTTT
TGCCTTCTCA CTTTCTGGAT GGACCAATGC ACATGCCACC TTTTATGGAG GTAGTGATGC CTCTGGGACA ATGGGAGGAG
CATGTGGGTA TGGGAATCTG TATTCAACAG GGTATGGGAC TGATACAGCA GCACTGAGTA CTGCATTATT TAACGATGGA
GCTTCGTGTG GGGAGTGTTA CAAAATCATG TGCGATTATC AAGCAGATCC GAAATGGTGC TTGAAAGGAA CATCTGTAAC
CATAACTGCC ACAAACTTCT GCCCTCCCAA TTTCGCTCTG CCAAGCAACA ACGGTGGCTG GTGCAACCCT CCTCTCAAAC
ACTTTGACAT GGCTCAACCC GCATGGGAAA AGATTGGTAT CTATAGAGGA GGGATCGTGC CCGTTTTGTT CCAAAGGGTT
GCATGCACGA AGAAGGGAGG GGTTAGGTTC AGTGTGAATG GGAGAGACTA CTTTGAGCTT GTGCTGATCA ACAACGTGGG
AGGAGCTGGA TCTATTCAAT CTGTGTCCAT CAAAGGCTCA AAAACTGGGT GGATGACTAT GTCAAGAAAT TGGGGTGCTA
ATTGGCAATC CAATGCCTAT TTGAATGGTC AATCTCTGTC TTTCCGAGTC ACAACAACCG ATGGTGTCAC CAAACTTTTT
CAAAATGTTG TTCCATCCAA TTGGGCTTTT GGCCAGAGTT TCTCTACCAG TGTTCAGTTT TAGGACGACA AGGGTTATTG
AGTTGTGGGT TTTGGAGTTT CCGATGAACG AAACGGCAGA GGCGTGCCTG TTATTTTGCC GGAGCAGCCC GCCACCCTTA
TCTTCTGCTT TTGAATTTGG TAAATTTGGT AAATATGGTA CGATCGAACC CATCAACTTG ATGCCCATGA TGAAGAACCC
TAAATAGACA TTCCAATTGC CTGAGTTATT ACAGAGAATC ATTGTTAGTT GTTGTGTGAT TCCTGTATAA ATGAACTTCT
TCAGAGTTTG AATCATACTA TGAACTATAA AGTGCTGCTC TATTCAGAGA ATTCGGAAAG GGGAACACTC TAATTCCCTG
AAATTCTATA TATTTGTAAG TCTAGGAGCT ATGTATTGCT TTTGCTAATT TGTTCTTCAG TTTCAC

>Vigan.02G025100.01
ATGGCCTCTG TGATGTTTGT TTTGGTAAGC TACCTCATAT TTTGTTGTTT CTCAGTTCAC AGTTTTGCCT TCTCACTTTC
TGGATGGACC AATGCACATG CCACCTTTTA TGGAGGTAGT GATGCCTCTG GGACAATGGG AGGAGCATGT GGGTATGGGA
ATCTGTATTC AACAGGGTAT GGGACTGATA CAGCAGCACT GAGTACTGCA TTATTTAACG ATGGAGCTTC GTGTGGGGAG
TGTTACAAAA TCATGTGCGA TTATCAAGCA GATCCGAAAT GGTGCTTGAA AGGAACATCT GTAACCATAA CTGCCACAAA
CTTCTGCCCT CCCAATTTCG CTCTGCCAAG CAACAACGGT GGCTGGTGCA ACCCTCCTCT CAAACACTTT GACATGGCTC
AACCCGCATG GGAAAAGATT GGTATCTATA GAGGAGGGAT CGTGCCCGTT TTGTTCCAAA GGGTTGCATG CACGAAGAAG
GGAGGGGTTA GGTTCAGTGT GAATGGGAGA GACTACTTTG AGCTTGTGCT GATCAACAAC GTGGGAGGAG CTGGATCTAT
TCAATCTGTG TCCATCAAAG GCTCAAAAAC TGGGTGGATG ACTATGTCAA GAAATTGGGG TGCTAATTGG CAATCCAATG
CCTATTTGAA TGGTCAATCT CTGTCTTTCC GAGTCACAAC AACCGATGGT GTCACCAAAC TTTTTCAAAA TGTTGTTCCA
TCCAATTGGG CTTTTGGCCA GAGTTTCTCT ACCAGTGTTC AGTTTTAG

>Vigan.02G025100.01
MASVMFVLVS YLIFCCFSVH SFAFSLSGWT NAHATFYGGS DASGTMGGAC GYGNLYSTGY GTDTAALSTA LFNDGASCGE
CYKIMCDYQA DPKWCLKGTS VTITATNFCP PNFALPSNNG GWCNPPLKHF DMAQPAWEKI GIYRGGIVPV LFQRVACTKK
GGVRFSVNGR DYFELVLINN VGGAGSIQSV SIKGSKTGWM TMSRNWGANW QSNAYLNGQS LSFRVTTTDG VTKLFQNVVP
SNWAFGQSFS TSVQF*