GBrowse Details

Vigan.02G024900.01

Basic Information:
Name: Vigan.02G024900.01
Multiple alignment
Variant Information
Position: Chr02:1820960..1823422 (+ strand)
Length: 2463
Functional Information:
Description: Similar to Thioredoxin superfamily protein. [XP_007017887.1, Theobroma cacao]
InterPro: Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:68.26,10.57,17.00,42.55,13.08,88.67, 59.66,16.41
Arabidopsis thaliana homolog: AT1G76020.1
Automatic updates:
Name: NM_001248650 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500267 (LOC100500267), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248650 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500267 (LOC100500267), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:1820960..1821148 (+ strand)
Length: 189
Type: five_prime_UTR
Position: Chr02:1821149..1821411 (+ strand)
Length: 263
Type: CDS
Position: Chr02:1821658..1821760 (+ strand)
Length: 103
Type: CDS
Position: Chr02:1822558..1822719 (+ strand)
Length: 162
Type: CDS
Position: Chr02:1822909..1823079 (+ strand)
Length: 171
Type: CDS
Position: Chr02:1823080..1823422 (+ strand)
Length: 343
Type: three_prime_UTR

>Vigan.02G024900.01 class=Sequence position=Chr02:1820960..1823422 (+ strand)
GTCGTATTTA GAGGAGTAAT TTTTTTCTTA AAATACCTTA ACTTTAATTA ATATCTGACT TTATGTTAAA CAATAACTAT
ATTAAGAAAT TAATAAAATT TAATATAAAT TAATATCTTG TACTTGGGAG TGGAATAGTA GACATAACAA CAAGGCTTGG
TTTGGTTGGT TGGTTCATTG AGAGTGAAAA TGGTGCGGAC GACAACATTG GTATTGGTTG GTTTTCAGGT TTTGGTTACT
CTGTTGAGTG CTGGTGCCGA TTACATACCG CCTTCAAGAT TTGACGGCTT CGTCTACGGA AAAGGGTCGT TGAATTTATT
GGATACGGTT TTGATCGAAG CGTTTTATGA TCCAGTGTGC CCAGACAGCA GGGATTCATG GCCCTCACTC AAACAAGCTC
TTCATCACTA CGGTTCTCGG GTTTCACTTC TTCTTCACCT ATTACCTCTT CCGTAAGTCA CACCAAATAC TTTCTCGTGC
CCTTTTTAAT TTTCTTCCCC TTTAAGGAAT TGACTTTTCT GCAATTGCCT ACTCACTCTT TAGATTTTAT TATGAATTGG
GTTCAAATTC AGCAAAGATC AAAAAGGAAT GTGATGGGTT GCTTTTTTCA TCATTGTTTG TGCGCTGACC TAAATTATCT
TTCCTTCTGT GTGGAATATT GATTTAGAAA TTTGGTTTCT GTATTCTCCA AATCACAGAT ATCACGACAA TGCTTTTGTT
GCGTCTCGTG CTTTGCACAT AGCGAGCAAT TTGAACGCAT CTGCGACTTT CCCCTTGCTG GAGTGGTTCT TCAAGCATCA
GGTTTGTATT CGAGTTTCAA AATCAATGTG TATGATGCGT GCGTTCTTTG AAGATGTTAT CATATTTACT CATAGCTTTG
GCCATTGTGA ATTGGAATTC CAATTTTCGT AGTGCTTTCG ATTTGCTAGT GCCTCTCACG GTTTAGTGAA ATTTGGGACT
TTGTTCTTTC CTGTCCTTGT ATTTTTTTTT CCATACAGGT ACTTTTCTTC TGAGACAATC CTGTTCGAGA AACTTTAGAA
CAACATATCT GTTTTAGATT CAAATCTAGT TGGTCATATA CTGCACTATT AGTGGCATTC ATATTCGTTT TATGTATTCA
GAATGGATTG TTCCCAGACA GTGGAAAATT TTTACTCGTG TTTTTATTCT ATCCAATCAG TAAGATGGAA AATTGTTTTC
TTGTTTTGAA TTTCCCTTTT CTTTCTGGAT GTTCTTTTCT AATTTCCCTT CTCTTTCTGC CTGTTCTGTT TTAATTTTCA
AATATAGCCT TACATATTGA TCATCTGGTG ATTGAGCGTT GCATCCGATT CATGGAGAGA TTCTAGTGGA TTCGCACAAT
GAAAGTTAAT TGTTGAATTA GTAAATGTGA CAATAATGTC ATAATTGTTT AAGGAACAGT AATAGACTAT TTGTAAAATC
ATAGTTATCT GGCTTAAAAT TGTTTACAGT GATGCCTCTG TGCTATGTAT GTTACGTGCT ATGATTGAGT CATTGGGTGT
ATTTCGCATC TCGGATAATA TTTCTATAAA GTTATTCAAG TTTTTTATTC ACGAAAACTG ATGCATACCC TTTAACAGGA
GAAATTCTAT GGGCCTAACA CACGGAACTT GTCTAGGGCT TCTATTGTGG AGGAGATAGT GAAGTCTGCA ACACAAGTTC
TTGGGAGGTC TTATTATAAA GCTATAAAGA ATGGCTTCAA TGACACAAAT ACTGATCATC AGACCAGAGT TTCTTTTAAG
GCAAGACAAA CTCTTTTAAT CTTTTAGGTT TCGTTCAGAT TAATATTAGA AGATATTTGG ATTTGAAATT TTGAGTTCGA
AACTGATATT TTCATATTTT GACTCTTTTA AGACTTGGAA AAACGCATAA ATATAGCTCA CCTCTCAACC AAATGCATTT
CTTATGTTTA TGTTTCCTTG AAATTGCAGT ATGCTGCTTC GAGAGGGGTG TATGGAACAC CTTTTTTCTA TGTCAATGGA
TTCTTGCTGT CTGATACTGG AGATGCCATT GACTACAAGG CTTGGAGGAA GGTCATTGAC CCATTGGTTG GTACCAAGAA
GAGTATCCAA AATACAGAGT CTCTTCATTT CTTCTTGTAA AAATTGTATG TACATAAAGT ACAGTTGCGT TAGCACTGTT
AAAGTAAAGG AATTTAAAGA AAGTGTATGC TGACTTATTA CAGGTGCTTG TACCAAGAAT GCAATAATGA AATAAAATGT
TACAAAACAT TCCTCAGTCC TCACGATGTG GCATTGGTTG CAATATGAGA TACACAGGTG ATGACTGGGT GATATTCCTT
ATCCTGTGTT AATGTATTAA AAGATATAGG ATTAAAGGGG ATATATTAAA ATGTAATAAA ACTTAGTAAA TTTTAATTTT
AACGAAGTAA GCAATGAAAT TAAATGAATA AATCGTGTAT TAATTTATCT TCATTTTTAT GCG

>Vigan.02G024900.01
GTCGTATTTA GAGGAGTAAT TTTTTTCTTA AAATACCTTA ACTTTAATTA ATATCTGACT TTATGTTAAA CAATAACTAT
ATTAAGAAAT TAATAAAATT TAATATAAAT TAATATCTTG TACTTGGGAG TGGAATAGTA GACATAACAA CAAGGCTTGG
TTTGGTTGGT TGGTTCATTG AGAGTGAAAA TGGTGCGGAC GACAACATTG GTATTGGTTG GTTTTCAGGT TTTGGTTACT
CTGTTGAGTG CTGGTGCCGA TTACATACCG CCTTCAAGAT TTGACGGCTT CGTCTACGGA AAAGGGTCGT TGAATTTATT
GGATACGGTT TTGATCGAAG CGTTTTATGA TCCAGTGTGC CCAGACAGCA GGGATTCATG GCCCTCACTC AAACAAGCTC
TTCATCACTA CGGTTCTCGG GTTTCACTTC TTCTTCACCT ATTACCTCTT CCATATCACG ACAATGCTTT TGTTGCGTCT
CGTGCTTTGC ACATAGCGAG CAATTTGAAC GCATCTGCGA CTTTCCCCTT GCTGGAGTGG TTCTTCAAGC ATCAGGAGAA
ATTCTATGGG CCTAACACAC GGAACTTGTC TAGGGCTTCT ATTGTGGAGG AGATAGTGAA GTCTGCAACA CAAGTTCTTG
GGAGGTCTTA TTATAAAGCT ATAAAGAATG GCTTCAATGA CACAAATACT GATCATCAGA CCAGAGTTTC TTTTAAGTAT
GCTGCTTCGA GAGGGGTGTA TGGAACACCT TTTTTCTATG TCAATGGATT CTTGCTGTCT GATACTGGAG ATGCCATTGA
CTACAAGGCT TGGAGGAAGG TCATTGACCC ATTGGTTGGT ACCAAGAAGA GTATCCAAAA TACAGAGTCT CTTCATTTCT
TCTTGTAAAA ATTGTATGTA CATAAAGTAC AGTTGCGTTA GCACTGTTAA AGTAAAGGAA TTTAAAGAAA GTGTATGCTG
ACTTATTACA GGTGCTTGTA CCAAGAATGC AATAATGAAA TAAAATGTTA CAAAACATTC CTCAGTCCTC ACGATGTGGC
ATTGGTTGCA ATATGAGATA CACAGGTGAT GACTGGGTGA TATTCCTTAT CCTGTGTTAA TGTATTAAAA GATATAGGAT
TAAAGGGGAT ATATTAAAAT GTAATAAAAC TTAGTAAATT TTAATTTTAA CGAAGTAAGC AATGAAATTA AATGAATAAA
TCGTGTATTA ATTTATCTTC ATTTTTATGC G

>Vigan.02G024900.01
ATGGTGCGGA CGACAACATT GGTATTGGTT GGTTTTCAGG TTTTGGTTAC TCTGTTGAGT GCTGGTGCCG ATTACATACC
GCCTTCAAGA TTTGACGGCT TCGTCTACGG AAAAGGGTCG TTGAATTTAT TGGATACGGT TTTGATCGAA GCGTTTTATG
ATCCAGTGTG CCCAGACAGC AGGGATTCAT GGCCCTCACT CAAACAAGCT CTTCATCACT ACGGTTCTCG GGTTTCACTT
CTTCTTCACC TATTACCTCT TCCATATCAC GACAATGCTT TTGTTGCGTC TCGTGCTTTG CACATAGCGA GCAATTTGAA
CGCATCTGCG ACTTTCCCCT TGCTGGAGTG GTTCTTCAAG CATCAGGAGA AATTCTATGG GCCTAACACA CGGAACTTGT
CTAGGGCTTC TATTGTGGAG GAGATAGTGA AGTCTGCAAC ACAAGTTCTT GGGAGGTCTT ATTATAAAGC TATAAAGAAT
GGCTTCAATG ACACAAATAC TGATCATCAG ACCAGAGTTT CTTTTAAGTA TGCTGCTTCG AGAGGGGTGT ATGGAACACC
TTTTTTCTAT GTCAATGGAT TCTTGCTGTC TGATACTGGA GATGCCATTG ACTACAAGGC TTGGAGGAAG GTCATTGACC
CATTGGTTGG TACCAAGAAG AGTATCCAAA ATACAGAGTC TCTTCATTTC TTCTTGTAA

>Vigan.02G024900.01
MVRTTTLVLV GFQVLVTLLS AGADYIPPSR FDGFVYGKGS LNLLDTVLIE AFYDPVCPDS RDSWPSLKQA LHHYGSRVSL
LLHLLPLPYH DNAFVASRAL HIASNLNASA TFPLLEWFFK HQEKFYGPNT RNLSRASIVE EIVKSATQVL GRSYYKAIKN
GFNDTNTDHQ TRVSFKYAAS RGVYGTPFFY VNGFLLSDTG DAIDYKAWRK VIDPLVGTKK SIQNTESLHF FL*