GBrowse Details

Vigan.02G010700.01

Basic Information:
Name: Vigan.02G010700.01
Multiple alignment
Variant Information
Position: Chr02:753881..759330 (- strand)
Length: 5450
Functional Information:
Description: Similar to Neutrophil cytosol factor. [G7J7R7, Medicago truncatula]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Src homology-3 domain (IPR001452)
Arfaptin homology (AH) domain/BAR domain (IPR027267)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.39,19.08,13.15,13.21,16.62,19.14, 18.91,16.65
Arabidopsis thaliana homolog: AT4G34660.1
Automatic updates:
Name: NM_001255584 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100783004 (LOC100783004), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255584 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max BAR and SH3 domain-containing protein (LOC100783004), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:753881..754093 (- strand)
Length: 213
Type: three_prime_UTR
Position: Chr02:754094..754210 (- strand)
Length: 117
Type: CDS
Position: Chr02:754835..754909 (- strand)
Length: 75
Type: CDS
Position: Chr02:754997..755149 (- strand)
Length: 153
Type: CDS
Position: Chr02:755282..755344 (- strand)
Length: 63
Type: CDS
Position: Chr02:755458..755658 (- strand)
Length: 201
Type: CDS
Position: Chr02:755805..755906 (- strand)
Length: 102
Type: CDS
Position: Chr02:756877..757028 (- strand)
Length: 152
Type: CDS
Position: Chr02:757480..757549 (- strand)
Length: 70
Type: CDS
Position: Chr02:757651..757773 (- strand)
Length: 123
Type: CDS
Position: Chr02:759064..759123 (- strand)
Length: 60
Type: CDS
Position: Chr02:759124..759330 (- strand)
Length: 207
Type: five_prime_UTR

>Vigan.02G010700.01 class=Sequence position=Chr02:753881..759330 (- strand)
TAAAAAGCCA ACTAAGGTGC CCAGGGAAGG AACAAACAAA GCCCCTGTCT ATGACATATA GAATGAAATT TCTTTCAACG
TGATTTGAAA AACCTCTGTC TGTCTCTTCC TTTTCTCTGT GATATTCAAA CATCTTTCCT ACTGTTTCGG CTGAAAACGC
ATCAGCAGTG TGCGCGGCGG TGGAAGGTGG ATCAAAAAGG ATTCTGAATG GAAGCTATCA GAAAGCAAGC CTCCAAACTT
CGAGAACAGG TTGCTCGCCA ACAACAGGTT CCCTCTCTCT TCCTCTCTCT GAATAAACCT ATTTCGATTG CCAGATCTTT
CTCCGATCAC CGAAATGCAT CTCTTCCAAT AGATCAATAC AAATACACGC CTCTTCAATT CGATTAGGAT TATAATTTAC
TTCGCATCGA TAATTCCGAG TTCTGACCAA CCTTGTCGTA CTCTCGCACT GCGGAAATGC TTAAGAAGTC TTGTAATGTT
TGATTCACCA AATTCTTAGA ATAATAAGCC TAATTTTAAG CTGCTCCGTC GCCGATTCGG AAACACTGCA TAGTTTAGAA
CTTGATTGGT GAATTAGCAA TTCGTTCAGT TACATTAAGT TTCTACTTGA AATAAGCTTT TTAAAATAAC TGAATTTATT
GATTTTTTTG TATTGATCTG ATGATGTTCC GAAGGGAAGG TGGCTTTAAT ATTTGGTAAG TAAGTTGTTT GGAATTGCAA
TGGTTTTTGA TTGGCTACGA GCTTGGTAAT CAAATACATT GTTTAGGGTA AAATGCATTT TTAATCCCTA ATTATATGGC
TTAATTTGGA TTTAGTGGTC TAAACAGTTG TTGTTAGTTT TTTTCCTGTA TTAGCACTAG TGATGATGTG ACAAGCATCC
ACCGCATGAT GGTCACTTAC TAATATGATG GTGCCGGTAG ACGTGTGTAG CAATTCTACT AAGTGCTGTA CATGAGCCTA
TTAATTATAC GCATGTAATT CAAAAAATCA GTGTTATATT TTAGTCATAT AGTATGTTCA TTCCGAAAGA TAGAAGGGTA
AAAACATGTC CTTGTGTTTA AAGGCCAATT TGTCATGTCT TAGCTTCTGA CTGAATGCAT CTCTCAGCAA AAGTCCAGAA
AATATTAGAT AATCTTTGAC GCACTAGTAT TTGTATCCTA CGCAGAGATT AATCTAACAA AGGTACACTG CCATGCAATT
TACTGTCCTC CCAAGTCATT ATACTGAGAT GAATATTAAT TGGATCCATA GATATGGCCT TGGCTCCTCC TACCCCAAAC
AGTAAAGTAA AATAAAGTAA ACTTTGAGAT AAAGAAAAAT AGTTTACACC CAATACTATT TTACAATATC AGTAACCTGT
CCCTGTGAGA CATTGGAACA CTTAATTAAA AAGGTTTCAT TTATTTGACT GTGGTCTGAA ATATGACGAT TACCACTTTT
CGTGAATGGG GTGAGTGTAT GTATGTGTAT GCACACACAT ACAGTTGATT TTTTGCTTTA GATGATTTTT TGCTTTCTTC
CCCTATTGAG GTTTTAACCA CAATTATTGC TATTTAGGCT GTGCTTAAAC AGTTTGGGGC TGGGGGATAT GGAGGCTCAG
ATAATATGGT TACTGATGAG GTGGAACTTC AACAACATCA GAAACTTGAG AAGCTTTACA TATCAACACG GGCTGGAAAG
GTTACTTGGT TTTTCTGTAC CAATACTCTA TTTTTGTTCA TTTTTTTTAT CTCCATTTAT ACGCTCTCTC CTTGGCTGAT
ATGAAATATA TTGTTTTTCA GCATTATCAA AGGGATATTG TCCGTGGTGT GGAAGGTTAT ATTGTAACTG GATCCAAGCA
AGTTGAAATA GGTCAGTTTG GTTGGTGAAA TTTTGTTTGT AGTTAGTTTT TGGAACAGAG TGTATGCCAT TGTGTAAGAC
AAGAAAAAGG AGGGTGGGAT GGAAATTGTG CTTATAATTA GAGAAATTGG AGTGCTGTTA GAAGGAATGA GAGAACAATT
ACAGGAGAGG TAATAGAATG TATACTAGAC AAAAAGCTAT TGAAGAGGAT AACTGCAATA ATGGGAGAGG AATGGAAATG
TGAATGAGCA GGAGTGAGAA ATAATGGCAA GGCAGAACAG AATTTTTGGG AGTAAGTTGG TAGCTTAGGC CACGGAGGGT
ATAATCAGCA AAGGTTGTTA TCTTATATTT CTGCATTTTT TTCTGGCATG TGTTTCCGTA TGTTGAGTTG CTTTTCCCTG
TAATGGAGAT TTTTCCCTGT GAGTATTGTT ATTGAGTTAC CACCATATCT GTTATTTAAC AGGAACAAAG TTATCAGAAG
ATAGCAGGAA ATATGGTGCA GATAATACAT GTACCAGTGG TAGTACGTTA TCAAGAGCAG CGCTAAACTA TGCACGTGCC
CGTGCACAAA TGGAGAAGGA GCGTGGAAGC TTACTAAAAG CACTTGGAAC ACAGGTAAAA AATGCCCTAG CACATGCACA
CTCATACATC ATAGCATTCT GAAGTTAAAA AGTTTCGTGC CAGTACATGT GATTTTTGTG CTAAAGTAAC GTGGACCAAA
GCATCTTAAA ATACAATCCT AGTTATATAT TGTCACTGTT TGGACTGATA CTACATATTT TCCGGTTTTG CTGCCTTAGC
TTTAATCCGG GCTCCACTGT CCCTGGGGAA GCTGTGTAAT ATCAAGCAGT TTCCCGAATC CTCTAAGTAG TTTATTAACT
TGAAATTTAA GTAGTGATAT TTATTTTACT GTATACATTT CTACCATTTC CCTTTTGAGA TATTATATCT TTTAGCTTCT
GTTATATTAT ACACACTGCA CACCATTATT GTGCCTGATA AATATAAGTA GGAATAATAT GGCTTTATGA CATTAACCAG
TATCTTCCGT TTATGCATGA ATCCATCATA TAGTCATTGA TAATTTTATG AAAGGTTCTG ATCTGGTGTC GGACATGTAC
ATGTAATTCT TGGATTTAAC CCTAACTGAA CTATTTTATC TGGAATGAAT AAGATACAGA ATTATAGCTG TTTAAATGAG
AGACAGAGCC TTGTTACTGT AGTAACATTG CGGATTTGTG ACCTAGGCCA CAGGTTCACA TCTAAGGAAG CCCCATTTCC
AATTGCAATG ATAAATTATG TACATATATT CTTCCCTGGC AAACCACGTT AGTTGGGAGT CTCGTACATT TCTATAGATG
TTTAGATTTG GCATCACTGG TTTAATGCTT GGATTCCGTC CTACTGAACT ATTTTATTGA CTCTGAATGG CCACAAATGC
TCGAATTTAT TTAATCTATG CTAGGTCTAG TCCTAACTTT AATTGAATTT GATGGTTGAC ACATACATTC ACCACGTTAG
TCTTTCTTGC TTATTGACCT AATCTTTCGG AGACTGAACA TTTTCAGTTT TGGTTGATGC TTAGGTTGCG GAGCCCTTAA
GAGCGATGGT GATGGGAGCA CCATTGGAAG ATGCCCGACA TCTTGCTCAA CGATATGATA GAATGCGGCA GGAAGCTGAA
GCCCAGGTAC CTGTAAATTT ATGTTTCACT TAATTGTATA TTTTTCATTT GTCACCAGCT TACTTTTTGG TAAATGTCGG
AATAAGTAAA TATTTCATCG ATGATTTTTT TCTGTGTACT TTGTAATTAC ATTGTTTTTT AAACCTAGAC AGGCTATTGA
AGTTTCCAAA CGCCAGGCAA GAGTAAGAGA AACACCAGGC AATACTGAGA ATGCTATGAA ACTGGAAGCA GCTGAAGTAA
AGCTCCAAGA CCTAAAGACA AACATGGCCA TATTGGGAAA AGAAGCAGCT GCTGCAATGG CTGCTGTTGA AGCGCAGCAA
CAGAGGTTAA CCCTCCAGCG TCTTATAGCT ATGGTATTAC AGTTTTGCCA TATTATGCTG CAGTTCTTAT GTTTTAAAAT
CTTAAATCTA AGTTATCACA AATTATTACT GTTACTTGAA TCCAATGTTC TATTTTTAAT ATTAAGGTTG AAGCAGAGCG
AGCATATCAT CAAAGAGTAC TCCAAATACT GGATCAGCTA GAGGGAGAGG TAATCCATTG TATCCGTTGG TCATTTTTTC
ATCATATTCT CAATATAAAA GTCAAATATG CCATTAGAAA GTTACATCAT TTTCTTTCAG TATCAACATA TGATTGTATG
ACGTTTATAT TTGAATAACA GATGATATCA GAACGACAGC GGATTGAAGC CCCTCCTACA CCAAGTGTGG ATAACAGCAT
GCCACCACCT CCATCATACG AAGAAGTAAA TGGTGTATAT GCTTCTCAAA CACATAATGG CTCAACAGAT AGTATGGGTT
ACTTCTTAGG AGAGGTTAGA ATTTTGCTTG TACAAAAATT AGATATTCTG CTAAAATAAT AAGTGATTGC TTACTTTATT
TTCTGCTGTT TACTCGTGCA GGTTTTGTTT CCCTACCATG CGGAGTCAGA AGTTGAATTG AATCTATCAG TTGGGGATTA
CATTGTTGTT AGAAAGGTTT GTCACTTACC AAGTCTAACA TTACATCTTT TGGTGAACCG AAAAGGATGT CATTTTATTT
GAAGGAATCA AACCACGATC CTCTGCCTCA TATCTCCAGC ACCGAGTTCT CTGCGGCCAA AATCTGAACC ATATATTTAC
ATTTTCTCTG TTTCTTTAAG TACTATATAC CAACTGATCC ACGGCTGAGA TTTGGCTGTA GACAACTTGT TGCAGAAGAT
CTGATTTGGA ATCGATTTCT TTTTCCTTGG GGGAGGGTGC TTTATATTTG GCTTGTTTTG GTATTTACAA ACCTGTAAAA
TCAAAATTTT GAAATTTGAC TTGTGAAAAA GGAAGTAAAC TACATGTATA CCATCTAACA TGATAGCGGA AAACAGTTGA
TTGAGTTGTC GGTTATGAAT GAATGATTCA AGACCACAAT GATTGTTTGA TCATTTTGCT TGTGCCTGAT GTCATGACAT
ACTTGTCTTG GCTATAAAGG AATTATGGTC CTGCAAGAGC CTGTATCCTT TGTGTATCAC GTTCGTGTTA TATTTAAAAG
AGGCCTTGGT TATGGTGCTG GTGAGGATAG GTTTCCCTAA AATCACTTTA AATTGTTCCT AATATGACTT TGATTGACAG
GTGACCAACA ATGGATGGGC TGAGGGCGAA TGCAAAGGGA AAGCAGGTTG GTTTCCATTT GGTTACGTTG AAAGAAGGGA
GCGAGTCCTT GCAAGTAAGG TAGCTGAAGT GTTTTGATTA TTTTTCTGCT GATCAGGGTT GAGTTGGTGG TTTCTTCCCC
AAGGGTTTTG TATGTGTGTA GGTTTTGGTT TGTGCTTCAT GGATACCAAT CCATTTGTGA TATATAGATG ATGACAACTT
CTTTCTTCTG ATTATCATTT GTAGCTTTGA TTTCATTTAA GTATTAAAAT ATTTATACTC TTTCCCGTTT TTAAGAAAAA
AAAATCGTAG 

>Vigan.02G010700.01
TAAAAAGCCA ACTAAGGTGC CCAGGGAAGG AACAAACAAA GCCCCTGTCT ATGACATATA GAATGAAATT TCTTTCAACG
TGATTTGAAA AACCTCTGTC TGTCTCTTCC TTTTCTCTGT GATATTCAAA CATCTTTCCT ACTGTTTCGG CTGAAAACGC
ATCAGCAGTG TGCGCGGCGG TGGAAGGTGG ATCAAAAAGG ATTCTGAATG GAAGCTATCA GAAAGCAAGC CTCCAAACTT
CGAGAACAGG TTGCTCGCCA ACAACAGGCT GTGCTTAAAC AGTTTGGGGC TGGGGGATAT GGAGGCTCAG ATAATATGGT
TACTGATGAG GTGGAACTTC AACAACATCA GAAACTTGAG AAGCTTTACA TATCAACACG GGCTGGAAAG CATTATCAAA
GGGATATTGT CCGTGGTGTG GAAGGTTATA TTGTAACTGG ATCCAAGCAA GTTGAAATAG GAACAAAGTT ATCAGAAGAT
AGCAGGAAAT ATGGTGCAGA TAATACATGT ACCAGTGGTA GTACGTTATC AAGAGCAGCG CTAAACTATG CACGTGCCCG
TGCACAAATG GAGAAGGAGC GTGGAAGCTT ACTAAAAGCA CTTGGAACAC AGGTTGCGGA GCCCTTAAGA GCGATGGTGA
TGGGAGCACC ATTGGAAGAT GCCCGACATC TTGCTCAACG ATATGATAGA ATGCGGCAGG AAGCTGAAGC CCAGGCTATT
GAAGTTTCCA AACGCCAGGC AAGAGTAAGA GAAACACCAG GCAATACTGA GAATGCTATG AAACTGGAAG CAGCTGAAGT
AAAGCTCCAA GACCTAAAGA CAAACATGGC CATATTGGGA AAAGAAGCAG CTGCTGCAAT GGCTGCTGTT GAAGCGCAGC
AACAGAGGTT AACCCTCCAG CGTCTTATAG CTATGGTTGA AGCAGAGCGA GCATATCATC AAAGAGTACT CCAAATACTG
GATCAGCTAG AGGGAGAGAT GATATCAGAA CGACAGCGGA TTGAAGCCCC TCCTACACCA AGTGTGGATA ACAGCATGCC
ACCACCTCCA TCATACGAAG AAGTAAATGG TGTATATGCT TCTCAAACAC ATAATGGCTC AACAGATAGT ATGGGTTACT
TCTTAGGAGA GGTTTTGTTT CCCTACCATG CGGAGTCAGA AGTTGAATTG AATCTATCAG TTGGGGATTA CATTGTTGTT
AGAAAGGTGA CCAACAATGG ATGGGCTGAG GGCGAATGCA AAGGGAAAGC AGGTTGGTTT CCATTTGGTT ACGTTGAAAG
AAGGGAGCGA GTCCTTGCAA GTAAGGTAGC TGAAGTGTTT TGATTATTTT TCTGCTGATC AGGGTTGAGT TGGTGGTTTC
TTCCCCAAGG GTTTTGTATG TGTGTAGGTT TTGGTTTGTG CTTCATGGAT ACCAATCCAT TTGTGATATA TAGATGATGA
CAACTTCTTT CTTCTGATTA TCATTTGTAG CTTTGATTTC ATTTAAGTAT TAAAATATTT ATACTCTTTC CCGTTTTTAA
GAAAAAAAAA TCGTAG

>Vigan.02G010700.01
ATGGAAGCTA TCAGAAAGCA AGCCTCCAAA CTTCGAGAAC AGGTTGCTCG CCAACAACAG GCTGTGCTTA AACAGTTTGG
GGCTGGGGGA TATGGAGGCT CAGATAATAT GGTTACTGAT GAGGTGGAAC TTCAACAACA TCAGAAACTT GAGAAGCTTT
ACATATCAAC ACGGGCTGGA AAGCATTATC AAAGGGATAT TGTCCGTGGT GTGGAAGGTT ATATTGTAAC TGGATCCAAG
CAAGTTGAAA TAGGAACAAA GTTATCAGAA GATAGCAGGA AATATGGTGC AGATAATACA TGTACCAGTG GTAGTACGTT
ATCAAGAGCA GCGCTAAACT ATGCACGTGC CCGTGCACAA ATGGAGAAGG AGCGTGGAAG CTTACTAAAA GCACTTGGAA
CACAGGTTGC GGAGCCCTTA AGAGCGATGG TGATGGGAGC ACCATTGGAA GATGCCCGAC ATCTTGCTCA ACGATATGAT
AGAATGCGGC AGGAAGCTGA AGCCCAGGCT ATTGAAGTTT CCAAACGCCA GGCAAGAGTA AGAGAAACAC CAGGCAATAC
TGAGAATGCT ATGAAACTGG AAGCAGCTGA AGTAAAGCTC CAAGACCTAA AGACAAACAT GGCCATATTG GGAAAAGAAG
CAGCTGCTGC AATGGCTGCT GTTGAAGCGC AGCAACAGAG GTTAACCCTC CAGCGTCTTA TAGCTATGGT TGAAGCAGAG
CGAGCATATC ATCAAAGAGT ACTCCAAATA CTGGATCAGC TAGAGGGAGA GATGATATCA GAACGACAGC GGATTGAAGC
CCCTCCTACA CCAAGTGTGG ATAACAGCAT GCCACCACCT CCATCATACG AAGAAGTAAA TGGTGTATAT GCTTCTCAAA
CACATAATGG CTCAACAGAT AGTATGGGTT ACTTCTTAGG AGAGGTTTTG TTTCCCTACC ATGCGGAGTC AGAAGTTGAA
TTGAATCTAT CAGTTGGGGA TTACATTGTT GTTAGAAAGG TGACCAACAA TGGATGGGCT GAGGGCGAAT GCAAAGGGAA
AGCAGGTTGG TTTCCATTTG GTTACGTTGA AAGAAGGGAG CGAGTCCTTG CAAGTAAGGT AGCTGAAGTG TTTTGA

>Vigan.02G010700.01
MEAIRKQASK LREQVARQQQ AVLKQFGAGG YGGSDNMVTD EVELQQHQKL EKLYISTRAG KHYQRDIVRG VEGYIVTGSK
QVEIGTKLSE DSRKYGADNT CTSGSTLSRA ALNYARARAQ MEKERGSLLK ALGTQVAEPL RAMVMGAPLE DARHLAQRYD
RMRQEAEAQA IEVSKRQARV RETPGNTENA MKLEAAEVKL QDLKTNMAIL GKEAAAAMAA VEAQQQRLTL QRLIAMVEAE
RAYHQRVLQI LDQLEGEMIS ERQRIEAPPT PSVDNSMPPP PSYEEVNGVY ASQTHNGSTD SMGYFLGEVL FPYHAESEVE
LNLSVGDYIV VRKVTNNGWA EGECKGKAGW FPFGYVERRE RVLASKVAEV F*