GBrowse Details

Vigan.01G543900.01

Basic Information:
Name: Vigan.01G543900.01
Multiple alignment
Variant Information
Position: Chr01:66353920..66356254 (+ strand)
Length: 2335
Functional Information:
Description: Similar to Small ribosomal subunit protein S13, mitochondrial. [Q8LPW2, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S13 (IPR001892)
Ribosomal protein S13-like, H2TH (IPR010979)
Ribosomal protein S13, conserved site (IPR018269)
30s ribosomal protein S13, C-terminal (IPR027437)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.14,13.78,8.93,5.91,13.40,21.47,4.2 9,6.17
Structure :
Position: Chr01:66353920..66354247 (+ strand)
Length: 328
Type: five_prime_UTR
Position: Chr01:66354248..66354307 (+ strand)
Length: 60
Type: CDS
Position: Chr01:66354399..66354632 (+ strand)
Length: 234
Type: CDS
Position: Chr01:66355136..66355288 (+ strand)
Length: 153
Type: CDS
Position: Chr01:66355289..66356254 (+ strand)
Length: 966
Type: three_prime_UTR

>Vigan.01G543900.01 class=Sequence position=Chr01:66353920..66356254 (+ strand)
GAGTGGCCAT TTCAGACTTG ACCTAACTTC CCTACAATAA AAGTACAAAA ATAATATCTG GAGTGAGAAG ATATTAAAAA
ATTGAAAGCA GGCAACGGAA TACAGTAGTT TACTTCAAAA TACAATCAAC AAATACAAGT CCTTTCCTTT CCTATACGCC
AATACAGTAT CTGGATCGTC GAAATACAAA GGTTTGGTAT TTTCGTGGTG GCTTCCGACT TCGGCATACG TCTCCTCCCG
CTGCAGTCAT CACACACCAT ACTTGAAAGC ATCTTCTCTT ACCTTTTTCC CTCTCCTCAG TCGCATCTTC AATTCCTCCC
ACTCCAACAT GTTCGGCTCC GCCCGAATCT TCTCCGACGT CGCTCTCCGC CTCCGCCAAA ACTTATCGGT AAATTCTCCT
TTGGCTCAAT TCGCCTTCGC CTAGGGCTTT GTCGAACATT CTGGAGATTC ACGTTGTCCT TTTCTCTCCC GTTTTGCAGC
TTCGAGGTGT GCGCGTGCAG AACATCAACA TCGGAGGCGG TATGGGAGGC GAGATCCCCG ACAATAAGCG TCTGGAGTAC
GCTCTCCAGC ACCTGCACGG AATAGGGCGC TCGAAAGCGC ACCACATCGT GTGCGAGCTC GGAGTTGAGA ACAAATTCGT
GAAGGATCTC AGCAAGAGGG AACTCTATTC CATTCGCGAG TTGCTCGCCA AGTACTTGAT CGGAAACGAT TTGGTATTTT
CTTCCCACCT TTTTTACGCC TCTTTGCATA AATTACTCTA TGTTGTTTGC ACACAAATAC AAAAAACCAA AGAAAGAGTA
AATTGCACCT TACTTTCGAG ACTTCGCAAA ACTCCTATTA TTCTCTATCA TGTTCGGCGG CGTTGTGCGC AAACCTCCTT
TACTGGGTAC ATGGGCACAC CCTGTAATGT ATGTTTTCTT AAACAACTAA GGAAGGTTAG TGTAACGAGT AAGTGGTCTA
TTAGGGGTGT CAGTATAATG TCTTCAGATG ATTAAGGACA GTTAGGGATG GAAAAAGGAG GGTGTCAGTA TAATTCACTC
AAAGCAAAAT GAGTCAAACT TTCTCGTTGG TTAAGATCAA CGTATGTGTA TAGGTTTTCA GAGAAGTCAG ATGAAAGAGC
TTCTGTAAAA TGTGTACTGT ATGATTTGAT TCTAACTTAT AAAATAGGTT TAATTTATTT CTGCCTTCTC ATTTTCTACT
TGTATGTGTG TTTCAGAAAA AGTGTGTTGA GAGAGATGTG GTAAGGTTGG TGGGCATTCA GTGCTACCGA GGGATCAGGC
ATGTGGATAA CTTACCCTGC CGTGGACAAA GGACTCATAC GAATGCACGC ACAAGGAGGA GCCGGAAGAC TTTCTCTGGA
TCGAGATAGG TACCGCTTGA CAAACAGATG AGTCTGGGAT GTTGAAATAA GTGAAATCAA TGTTCAGATT TACATGTTCA
ATCTGCCTTT GTCGGGTTTA TCTTTTTCTG CAAGAGCTTT AATGGTCTTA TTCTGCATTT TGGTGGGCTT CTCCAACATT
ACAGCGTCAG TGCTGTTAAA TTTTTCACCT ATTCTCTCCT CATTTGCTGG TAACCAGAGC TCAATTATTT TGCACTCTTT
AGTCGTCAGT GTTTTGTTAT GCACTGATTT TGGGTGATTG AATGTGTTAG CCAGCTACTA ACATGAGATG AGCGGGGCCT
GGTGTTAATT TTATCATATC AAAGCTTATA TACTGAAATA AACTTTTAGG TTTTCTACAT TTTGATAAAC TACAATTGTT
TCTAACAGGA CAAGAACATT TTCAAACAAG ATTTGCTAAA TTCAAAGCAA TTCAAAACTA GTTTACAACC AATTATGAAA
TTATGGTATA GAACAACTCC TGCTAAAGCC ACTTTAGAAC CCGTTTTTGT TAGATGTTCT AGGCAGCAGA TAGGAGTTAA
CAGTGGAATA ATAATCAGAG TATGTATACT CTACAGTTAT TGCATTCTAC CAGGTTTCTT GACCTCCACC CTGAGTTCCC
CTGCTGACAA AGAAGCCAGC AGGCACCCCT ACCAGCTTCT GCTCTCTCCG CAACTTACCT ATTGAATCTA AAAAACGCCT
TCATCTGTGC TGTCATGCTT CCTTACATTG TTGAAAATCC AAACAGCAAG CCACCAGCCT CCATCAACTT GTATTTCGTT
TGATGTTTTT CGTTTATTGC TTTAGTCCAA TTTCAATCGT CCAGTGCTAT TGTGTATTGT TCTATTTTCG AGAAAAGCAA
TTACTGAATT TGGTCTGCTG ACTATTACAA GTGAAAAAAT AAAATAAAAT AAAGTTGTCA TTGTGAATGC TTATGTGTGA
GAAAGACAAT GTTTG

>Vigan.01G543900.01
GAGTGGCCAT TTCAGACTTG ACCTAACTTC CCTACAATAA AAGTACAAAA ATAATATCTG GAGTGAGAAG ATATTAAAAA
ATTGAAAGCA GGCAACGGAA TACAGTAGTT TACTTCAAAA TACAATCAAC AAATACAAGT CCTTTCCTTT CCTATACGCC
AATACAGTAT CTGGATCGTC GAAATACAAA GGTTTGGTAT TTTCGTGGTG GCTTCCGACT TCGGCATACG TCTCCTCCCG
CTGCAGTCAT CACACACCAT ACTTGAAAGC ATCTTCTCTT ACCTTTTTCC CTCTCCTCAG TCGCATCTTC AATTCCTCCC
ACTCCAACAT GTTCGGCTCC GCCCGAATCT TCTCCGACGT CGCTCTCCGC CTCCGCCAAA ACTTATCGCT TCGAGGTGTG
CGCGTGCAGA ACATCAACAT CGGAGGCGGT ATGGGAGGCG AGATCCCCGA CAATAAGCGT CTGGAGTACG CTCTCCAGCA
CCTGCACGGA ATAGGGCGCT CGAAAGCGCA CCACATCGTG TGCGAGCTCG GAGTTGAGAA CAAATTCGTG AAGGATCTCA
GCAAGAGGGA ACTCTATTCC ATTCGCGAGT TGCTCGCCAA GTACTTGATC GGAAACGATT TGAAAAAGTG TGTTGAGAGA
GATGTGGTAA GGTTGGTGGG CATTCAGTGC TACCGAGGGA TCAGGCATGT GGATAACTTA CCCTGCCGTG GACAAAGGAC
TCATACGAAT GCACGCACAA GGAGGAGCCG GAAGACTTTC TCTGGATCGA GATAGGTACC GCTTGACAAA CAGATGAGTC
TGGGATGTTG AAATAAGTGA AATCAATGTT CAGATTTACA TGTTCAATCT GCCTTTGTCG GGTTTATCTT TTTCTGCAAG
AGCTTTAATG GTCTTATTCT GCATTTTGGT GGGCTTCTCC AACATTACAG CGTCAGTGCT GTTAAATTTT TCACCTATTC
TCTCCTCATT TGCTGGTAAC CAGAGCTCAA TTATTTTGCA CTCTTTAGTC GTCAGTGTTT TGTTATGCAC TGATTTTGGG
TGATTGAATG TGTTAGCCAG CTACTAACAT GAGATGAGCG GGGCCTGGTG TTAATTTTAT CATATCAAAG CTTATATACT
GAAATAAACT TTTAGGTTTT CTACATTTTG ATAAACTACA ATTGTTTCTA ACAGGACAAG AACATTTTCA AACAAGATTT
GCTAAATTCA AAGCAATTCA AAACTAGTTT ACAACCAATT ATGAAATTAT GGTATAGAAC AACTCCTGCT AAAGCCACTT
TAGAACCCGT TTTTGTTAGA TGTTCTAGGC AGCAGATAGG AGTTAACAGT GGAATAATAA TCAGAGTATG TATACTCTAC
AGTTATTGCA TTCTACCAGG TTTCTTGACC TCCACCCTGA GTTCCCCTGC TGACAAAGAA GCCAGCAGGC ACCCCTACCA
GCTTCTGCTC TCTCCGCAAC TTACCTATTG AATCTAAAAA ACGCCTTCAT CTGTGCTGTC ATGCTTCCTT ACATTGTTGA
AAATCCAAAC AGCAAGCCAC CAGCCTCCAT CAACTTGTAT TTCGTTTGAT GTTTTTCGTT TATTGCTTTA GTCCAATTTC
AATCGTCCAG TGCTATTGTG TATTGTTCTA TTTTCGAGAA AAGCAATTAC TGAATTTGGT CTGCTGACTA TTACAAGTGA
AAAAATAAAA TAAAATAAAG TTGTCATTGT GAATGCTTAT GTGTGAGAAA GACAATGTTT G

>Vigan.01G543900.01
ATGTTCGGCT CCGCCCGAAT CTTCTCCGAC GTCGCTCTCC GCCTCCGCCA AAACTTATCG CTTCGAGGTG TGCGCGTGCA
GAACATCAAC ATCGGAGGCG GTATGGGAGG CGAGATCCCC GACAATAAGC GTCTGGAGTA CGCTCTCCAG CACCTGCACG
GAATAGGGCG CTCGAAAGCG CACCACATCG TGTGCGAGCT CGGAGTTGAG AACAAATTCG TGAAGGATCT CAGCAAGAGG
GAACTCTATT CCATTCGCGA GTTGCTCGCC AAGTACTTGA TCGGAAACGA TTTGAAAAAG TGTGTTGAGA GAGATGTGGT
AAGGTTGGTG GGCATTCAGT GCTACCGAGG GATCAGGCAT GTGGATAACT TACCCTGCCG TGGACAAAGG ACTCATACGA
ATGCACGCAC AAGGAGGAGC CGGAAGACTT TCTCTGGATC GAGATAG

>Vigan.01G543900.01
MFGSARIFSD VALRLRQNLS LRGVRVQNIN IGGGMGGEIP DNKRLEYALQ HLHGIGRSKA HHIVCELGVE NKFVKDLSKR
ELYSIRELLA KYLIGNDLKK CVERDVVRLV GIQCYRGIRH VDNLPCRGQR THTNARTRRS RKTFSGSR*