GBrowse Details

Vigan.01G514300.01

Basic Information:
Name: Vigan.01G514300.01
Multiple alignment
Variant Information
Position: Chr01:64091560..64093944 (+ strand)
Length: 2385
Functional Information:
Description: Similar to Seed maturation protein PM36. [Q9SWB6, Glycine max]
InterPro: Thiaminase-2/PQQC (IPR004305)
Haem oxygenase-like, multi-helical (IPR016084)
PET18/seed maturation protein PM36 (IPR026285)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1349.66,1093.40,4.29,1.93,15.64,274. 60,16.47,4.37
Arabidopsis thaliana homolog: AT3G16990.1
Automatic updates:
Name: NM_001251400 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max seed maturation protein PM36 (TENA_E), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:64091560..64091783 (+ strand)
Length: 224
Type: five_prime_UTR
Position: Chr01:64091784..64091942 (+ strand)
Length: 159
Type: CDS
Position: Chr01:64092212..64092429 (+ strand)
Length: 218
Type: CDS
Position: Chr01:64092734..64093049 (+ strand)
Length: 316
Type: CDS
Position: Chr01:64093050..64093944 (+ strand)
Length: 895
Type: three_prime_UTR

>Vigan.01G514300.01 class=Sequence position=Chr01:64091560..64093944 (+ strand)
TTTTTTTTTT TCAAAATAAT TTTTCAACAA TATCAATACC AAACTCTAAT TTCCATATAA ACACCATTTT TTTAGAATTA
ATTGTCGATG TACTCTTAAC AAAGAAATTA GTTTTAATAA AACAACATTA TATTATATAT ATTTTTTGTT TTCAATTTGT
TTTGAAGCCT ATAAATGTGA ATTGGCTGTG AAACAAGAGC AGCAACAGCT AGTGAGAAAT CGATATGATG GAGCAAAAGT
CAAAAGAGGA AGAGAAGAAG GTCGGTGTGA TTGAGACATG GTTGAGGAAG CATCCTCTTC CCTTCAAAGG AGCCACAAGG
CACCCTCTTA TTCTTAGCAT TCGCGATGGT TCCATCGACA TAGCTTCCTT CAAATCATGG CTGGTTAGTA ATACTTTGTT
TTTCTTTTGT CAGATTATTG GTTTCTGATT TATATTTCAG GTTCCTGACA TTATATTATT TAGTACAATT TTGAGTAGCT
CTGTCAAAAA TTTAACTATT GTTTCGCAAT TTGTGCAATG TCGCACAGTT TTTTGTGTTA TTTAAGGAAC TCGGTTTCAG
AATACCTAAT TTTTAGTGAA TTTTAGTTGA TAACAAAATT TGTGTTGGAA GAAGTTTGCT GTTTATATAG TTGTTGTATT
CTTGTTATGC AGGCACAAGA TTACTTGTTC GTTCGGGCTT TTGTCCCATT TGTAGCCAGT GTGTTGATAA AAGCTTGGAA
GGAATCAGAT GAGAGTGGTG ACATGGAAGT AATATTGGGG GGCGTGGCTT CCCTGGAGGA TGAGATATCA TGGTTTAAGA
GAGAAGCTAG CAAGTGGGGT ATTTCACTCT CTGAAGTTGT TCCTCAGCAA GCAAACAAAA AATACTGTGG GTAGGTTTGC
TGTTCTTCTG CCATCACATT CTGATCAATG TATTATAGGC AACAGAATTT TCTCACGTTT CTGCGGGAGA TTTAAGAAAT
GATTGAATTT TGAAGTGGTC AATAATGCCA AGGTTTAATG AACTGTAGAC TAGATTTTTA CGGGTTAGAT CCTTTCCTAG
GTGTACTCTA ATGTAATGAA ACAAAAATCC CTCGGATTCT AGACATGGAT ACATGGAATT TTAGACAAAT CATTTGGTAC
TCTGGTCTGC TAGGTTGTTT GTATTGTGTT GTAACATATG AAACACTGTG GCAGGTTGCT GGAAAGTCTG ATGAGTCCGG
ACGTGGAATA TACTGTGGCT ATCACAGCAT TTTGGGTTAT TGAAGTAGTG TATCAGGAGA GCTTTGCTTA CTGCATTGGA
GAAGGCTCCA AAACTCCGCA AGAACTGAAA GAGACTTGCG AAAGGTGGGG CAGTGAGGCT TTTGCTAAGT ATTGCCAATC
CCTGCAAAAC ATTGTCAATC GGCGCTTACA AAAGGCTTCT GATGAAGAAC TCAAGAAGGC TGAACGTATG TTCCTAAATG
TTCTGGAGTA CGAAGTTGAT TTCTGGAACA TGAGCCGGGG AAATGTGTGA TTTTGTTCAA GAATCAATGG TATATTCATA
TGCTTAAATA ATCAAAGCCT AGGAAAATGC TACATATGTT GTTCGGTTGG ACCATTCACA TATCAAAGTA CAGCATGAAA
TGTTTATTTC CTAGAGAAAT AATTCTTAGC AAAATCTCAA GCATATGGAC ATAACATGAG TTTGGAATCT TACATTTTGT
TCAAGTTTTA TGCCCTTCAT TTATCTCAAG TGAAAAGAAG GAAAGAGGCT TTGTTTCTGC TGAATGCTTT AGTTGGAAAA
CCATTACTAA ACAAAAAACC AGTTAATTTT AAAGATCGTG TTTATGAAAT TGCAATATTT CATGAGTTTG TATCAGTGTA
CTTTCATATC AATTAACAGT GAAAACAAAT AGGTTCATAG CATGAAACAT CATATCTCTC GTTTAAGTTA TCGGACATGC
TACTTCCTCA ATAATTTTTT CAACAAGGGA ATGAATTATT TGACAAATTT CTAACTAGCA TTATAGAACT AGATCGGTTA
GAAACTGCTA TGACAGTGAT TAGCATTACA GTGGTAGTCC CGAAGTTGAA ACAACTACAG TTGTAGCAGA AAGAACATGC
GAGTACTAAC TTTTGGATGT GGTAAAGTGG TGCCGACAGA ACTAAGCTGC TTTTCTAAGT TGAGTTTAAG CATGAATTAA
GAATGTATTT TGAACAAGGA TCATGGATTT CTTCTACAGA GAGTAGTATT GCCAACAGAG TCAAGCTTTG AGCGCCAAAT
TCTTCTCTAT CAAGCTAAAA TATGCAAGGA GATTCGTAAA TAATCGATTA ACTTTTATAA TAACGTAATA AATAGACAAA
TAAACAATGA CCATAGTTTC AAATAAATAC CATGGAGTTA GTTTGTACCA TATCTTTGAC CAGTA

>Vigan.01G514300.01
TTTTTTTTTT TCAAAATAAT TTTTCAACAA TATCAATACC AAACTCTAAT TTCCATATAA ACACCATTTT TTTAGAATTA
ATTGTCGATG TACTCTTAAC AAAGAAATTA GTTTTAATAA AACAACATTA TATTATATAT ATTTTTTGTT TTCAATTTGT
TTTGAAGCCT ATAAATGTGA ATTGGCTGTG AAACAAGAGC AGCAACAGCT AGTGAGAAAT CGATATGATG GAGCAAAAGT
CAAAAGAGGA AGAGAAGAAG GTCGGTGTGA TTGAGACATG GTTGAGGAAG CATCCTCTTC CCTTCAAAGG AGCCACAAGG
CACCCTCTTA TTCTTAGCAT TCGCGATGGT TCCATCGACA TAGCTTCCTT CAAATCATGG CTGGCACAAG ATTACTTGTT
CGTTCGGGCT TTTGTCCCAT TTGTAGCCAG TGTGTTGATA AAAGCTTGGA AGGAATCAGA TGAGAGTGGT GACATGGAAG
TAATATTGGG GGGCGTGGCT TCCCTGGAGG ATGAGATATC ATGGTTTAAG AGAGAAGCTA GCAAGTGGGG TATTTCACTC
TCTGAAGTTG TTCCTCAGCA AGCAAACAAA AAATACTGTG GGTTGCTGGA AAGTCTGATG AGTCCGGACG TGGAATATAC
TGTGGCTATC ACAGCATTTT GGGTTATTGA AGTAGTGTAT CAGGAGAGCT TTGCTTACTG CATTGGAGAA GGCTCCAAAA
CTCCGCAAGA ACTGAAAGAG ACTTGCGAAA GGTGGGGCAG TGAGGCTTTT GCTAAGTATT GCCAATCCCT GCAAAACATT
GTCAATCGGC GCTTACAAAA GGCTTCTGAT GAAGAACTCA AGAAGGCTGA ACGTATGTTC CTAAATGTTC TGGAGTACGA
AGTTGATTTC TGGAACATGA GCCGGGGAAA TGTGTGATTT TGTTCAAGAA TCAATGGTAT ATTCATATGC TTAAATAATC
AAAGCCTAGG AAAATGCTAC ATATGTTGTT CGGTTGGACC ATTCACATAT CAAAGTACAG CATGAAATGT TTATTTCCTA
GAGAAATAAT TCTTAGCAAA ATCTCAAGCA TATGGACATA ACATGAGTTT GGAATCTTAC ATTTTGTTCA AGTTTTATGC
CCTTCATTTA TCTCAAGTGA AAAGAAGGAA AGAGGCTTTG TTTCTGCTGA ATGCTTTAGT TGGAAAACCA TTACTAAACA
AAAAACCAGT TAATTTTAAA GATCGTGTTT ATGAAATTGC AATATTTCAT GAGTTTGTAT CAGTGTACTT TCATATCAAT
TAACAGTGAA AACAAATAGG TTCATAGCAT GAAACATCAT ATCTCTCGTT TAAGTTATCG GACATGCTAC TTCCTCAATA
ATTTTTTCAA CAAGGGAATG AATTATTTGA CAAATTTCTA ACTAGCATTA TAGAACTAGA TCGGTTAGAA ACTGCTATGA
CAGTGATTAG CATTACAGTG GTAGTCCCGA AGTTGAAACA ACTACAGTTG TAGCAGAAAG AACATGCGAG TACTAACTTT
TGGATGTGGT AAAGTGGTGC CGACAGAACT AAGCTGCTTT TCTAAGTTGA GTTTAAGCAT GAATTAAGAA TGTATTTTGA
ACAAGGATCA TGGATTTCTT CTACAGAGAG TAGTATTGCC AACAGAGTCA AGCTTTGAGC GCCAAATTCT TCTCTATCAA
GCTAAAATAT GCAAGGAGAT TCGTAAATAA TCGATTAACT TTTATAATAA CGTAATAAAT AGACAAATAA ACAATGACCA
TAGTTTCAAA TAAATACCAT GGAGTTAGTT TGTACCATAT CTTTGACCAG TA

>Vigan.01G514300.01
ATGATGGAGC AAAAGTCAAA AGAGGAAGAG AAGAAGGTCG GTGTGATTGA GACATGGTTG AGGAAGCATC CTCTTCCCTT
CAAAGGAGCC ACAAGGCACC CTCTTATTCT TAGCATTCGC GATGGTTCCA TCGACATAGC TTCCTTCAAA TCATGGCTGG
CACAAGATTA CTTGTTCGTT CGGGCTTTTG TCCCATTTGT AGCCAGTGTG TTGATAAAAG CTTGGAAGGA ATCAGATGAG
AGTGGTGACA TGGAAGTAAT ATTGGGGGGC GTGGCTTCCC TGGAGGATGA GATATCATGG TTTAAGAGAG AAGCTAGCAA
GTGGGGTATT TCACTCTCTG AAGTTGTTCC TCAGCAAGCA AACAAAAAAT ACTGTGGGTT GCTGGAAAGT CTGATGAGTC
CGGACGTGGA ATATACTGTG GCTATCACAG CATTTTGGGT TATTGAAGTA GTGTATCAGG AGAGCTTTGC TTACTGCATT
GGAGAAGGCT CCAAAACTCC GCAAGAACTG AAAGAGACTT GCGAAAGGTG GGGCAGTGAG GCTTTTGCTA AGTATTGCCA
ATCCCTGCAA AACATTGTCA ATCGGCGCTT ACAAAAGGCT TCTGATGAAG AACTCAAGAA GGCTGAACGT ATGTTCCTAA
ATGTTCTGGA GTACGAAGTT GATTTCTGGA ACATGAGCCG GGGAAATGTG TGA

>Vigan.01G514300.01
MMEQKSKEEE KKVGVIETWL RKHPLPFKGA TRHPLILSIR DGSIDIASFK SWLAQDYLFV RAFVPFVASV LIKAWKESDE
SGDMEVILGG VASLEDEISW FKREASKWGI SLSEVVPQQA NKKYCGLLES LMSPDVEYTV AITAFWVIEV VYQESFAYCI
GEGSKTPQEL KETCERWGSE AFAKYCQSLQ NIVNRRLQKA SDEELKKAER MFLNVLEYEV DFWNMSRGNV *