GBrowse Details

Vigan.01G485500.01

Basic Information:
Name: Vigan.01G485500.01
Multiple alignment
Variant Information
Position: Chr01:61537704..61542365 (- strand)
Length: 4662
Functional Information:
Description: Similar to vesicle transport protein USE1-like. [XP_008232695.1, Prunus mume]
InterPro: Vesicle transport protein, Use1 (IPR019150)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.75,14.29,5.24,4.84,8.65,4.60,6.05,6.29
Arabidopsis thaliana homolog: AT3G55600.1
Automatic updates:
Name: NM_001255817 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100793814 (LOC100793814), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361520 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative membrane fusion protein Use1 (LOC100793814), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:61537704..61537860 (- strand)
Length: 157
Type: three_prime_UTR
Position: Chr01:61537861..61538037 (- strand)
Length: 177
Type: CDS
Position: Chr01:61538596..61538695 (- strand)
Length: 100
Type: CDS
Position: Chr01:61539160..61539264 (- strand)
Length: 105
Type: CDS
Position: Chr01:61539342..61539457 (- strand)
Length: 116
Type: CDS
Position: Chr01:61539667..61539739 (- strand)
Length: 73
Type: CDS
Position: Chr01:61541033..61541100 (- strand)
Length: 68
Type: CDS
Position: Chr01:61541255..61541338 (- strand)
Length: 84
Type: CDS
Position: Chr01:61541339..61542365 (- strand)
Length: 1027
Type: five_prime_UTR

>Vigan.01G485500.01 class=Sequence position=Chr01:61537704..61542365 (- strand)
ATCTGGGTTC GGGTGTTAGG TAATATCATT CTGAATCATG GTGAAAAGAA AAATTCACGG ACCCTTAACG TTCTTAACTT
CCTTTACTTA ATCAAACTCT GAAACTCCTT ATTCAAACTC CGAATATATT TCCAGAATTC TCCAATTTTT CCAAAGCCCT
AACAACTGAA AACCACCACA TTGCCCAAAT TCCAAATCGC GACTGAAGTT TGTTCTTTCT CGCTTCGAAC AGACATTTGG
AGAAGCTTAT GGGAGTCGAA CGTTGGCACT AGAGTCACGC GCGGGGGAGT TGAACGGTGA CCAAAATAGA TTCTAGGGTA
CGCGTGTAAA GTGATCAAAA ATCAAGAGTA GGATATGCGA TAGAACTTCA TCGTCCATAG GGTAAGTTGT CTACCTTTTG
CTCTTTCAAC TTCAATGTGA TCTACTGCGA AAGCATGTTG GTTGTCATGA GATATAAACT AGGTTTTATT TTCCCTTTTA
ATTCAGTCAA ATCATTGGTT GCTGTAGTTC TCTTTAGGGA TATGCAGATA AGTCTTAGAT CATGTTATAT AACCACCCAC
GATGCTGAGC TTGTAAATCG TGGGTTTGAT TATTTTACCG ATGGACAATT ATATTTCTTC CTTCTTTGTA CTTTTCCTTT
TTGTTTCACT CTTAATCTAA TAGAAGCTTT GGTCTTTGTT CAATGGAACG TTCTAGTTTT AATTTTAATT ACAGTGTATA
TATCACTAGA AATTGGCATT AATTGATTTA TTTAATCTGT ATTATGTAAA AGTATAGTTT ACTGCTGCAA AAAGATGCAC
CGGTATGCCC ATGTTTGGAA GCAAAGTTTA TTTCTCAACT TTAAACTTGT TGAAATGGTT TCGTTGATAT TTAGGACTTC
TGGTTGAGTT TAATTTGGGT AACTTGACCG GATAGGCTTT ACCGATAAGC GATAATTGTT TTCAGAGTGA TACATAATCG
CCTTTGTTTG TTTGCTTAAT GATGTTTAAT TTATAGATCA TTTATATAAC TTCTGAACAC TATAGATATG GGAATCAGTA
AAACAGAAGT AAACTTAAGG AGGTTGCTTG CAGCTGCTCC TCAACAGCAA AACCAGGCAA AACTGGTGCA TGTAAGTCTG
AAGATTTTTT TGTATTATTA ATTTTAGAGT TAAAAACATT ATGTTAATAA TATTTTTCTA ATTTTCTTGA CCTATATGTT
TTATTTAGTC ATTTGTTAAC TTTAGAAGAC ATAGTTAATC CTTTGTTGAT TCTGACATTC TACAGTATGT TGCTACTTTA
CGTGAACAAT TGGAGCAATT GGGTGAAGAA AAGACACCAG AGGGCTTACC AAGGTATTGG TGTCTCTTTA TTTACCATTT
AATACACATA GATGTCATGG AATTATAAGT GAAACGACAT AACATCAGTT TTTGTTTCTA AATGACAACA CAATCATGGG
GTAGTTTTTA TTCTTGGAAA TCTTACCCTT AATTTTAATA AGCTGTAAGT GGCGGAGGTG GGTCTTCACA GGGTATGGAA
TGGGGTGCGG GAAGGTGGCT GCCCAAGTTT AAAAGTTTCG TGGAATAGAA AAATGTAAAA GAAGAAATTA GATATAGTTT
ACCCTAAACA CAATCTGAAC ATCATATGGC CACCCCAATT TTTTAATCAA GATATGCAAC TATTAGTACA GTAGGTTTTT
CTATCTAATG GGCATTGTTT GGGTTTAAAC AGCTGAATGC TAGAAACTAT TACTTATTAA AATTTTAGGG AATTAAATGA
AAAAAAAAAG AGGAGAAGAG TGATGTTGTA ATGTAAAATA ATAATTTAAG ACTTTTATTC AGAAAATATT CTAGGTCAAG
AGCTAGTATT GAGCAATTGG TATAAGCTCA GTCCAATAAC ATACTTAACT AATGGGAGAC TACCACAATA ATTATCTGCT
GGTATTGAGC AATTGGTATA AGCTCAGTCC AATAACATAC TTAACTAAAA GGAGACTACC ACAATAATTT ATCCTTATAT
TTAAAGGATA AATATAGGTC CAGCAGACTA TGCAATAAAA GAATGGAGTT ATTTTATGAT TGACAATGAG TTCTCTCTAA
GATATTACTC ATGTTGAACG TAAGCTATAT ACTTCTTGAC CTTCTAAGTA AGCCTTTGAT AAAATCTACG ATTTGTATAA
ATTGTTAGAT TTTACTGTGA AAAGATAGAA GACGAGAATT GAAGCAAGAA AGTTTTATTT CTCATATCAT TTAGAATTTT
GTTACAACAA AGATTATATA GCTACAAGTA GCTTGCTCTT TATGGAACAT AAACCGTTAT AGCCAACTTA TCACATACCA
GCTGCCTGGA CTGAACTTAC TGGTTACCCT ACAAGGAATC AAAACAGTTA TGGACAGTTA CAGCGATTGT CACATGCCAG
TTGGCTGGAC TGAATTAGCC AAAAACTCAC TCAGTACAAT ATACACACAG AAAAGATTAT ATTATATTTC TTTAAAAACT
AACTTAGTTG ATTCCTTTTC CTTCCCTAGA TAGTCCGTTA TCTTCATTTT TGTAACTTAT AAATAAATTA AAGCTATTAT
ATTCCCCCTA CTTGTTATGC ATGTGCATTC ATTTGTGTGT GTATTCGCTC TGCTCTGCTA ATGCAGGATT TCAAAGGCTA
CGTTGATTGA GTACTCAGAG AAGGTTGAAG CCATTGCTTC CAAATTAGTT AACCACGTGG TATGTATTTG TGAATTAATG
TATCCTTGAG AGATGTTAAA GTGTGAAAAA GTCTTTAAGC CAAATGACTA AAAAGTTAAG GTTTATGGAT TTAATTTTTT
TTACTGGATC TGGTGAAAAT TTGTTCCTTT TTGGTTTTTC CTTATCTGTG TTTTAGTTTT TTTTGGCCAA ATAGGTGCAA
TCATTTAACC ACAGTTTTCT TAACCCAGAC TGACCAACAA GTATCCGAGA AGGCTTTTGA GAGGAGTTTT GTTGAAGAAA
ACTCTTCTGA AATTGAGGAA AAAAAGCAGA TACCCCTTTC GTCTGGGTTG AGAAGAAGAC CTGTGTAAGC TATAGTTTGG
CTTTCTTACT ATACATATTT TGTAGACTGT TTTACTGTTG CTCATCTGTT TCAATGGACA GACCCACATC ATACACAGAA
GATAAAGTAC ACGACCTTGC TGAGACTGAC AATACATCAC CTGTCAAACT GGATGCTAGT GCACACGCAC ACATTGAAAA
GCACAGGTAC AGTTTACTTG AGTTGTTATT TAAAGTTTAT GTAGCGGTGG GTCAATGGAC TCTGTACTGC TTTGGTGAAG
AATCCTAAAC TTGCAATCCT TGTGTTCATT AATTTGACTT GTCCACAACA GCAAAGTATA TTTTTCTTCA GGTCAAGCAC
TGATATATTC ATGTCAATTG TTACATCATT GGTAACTGGT TAACTGTTAC CACATACTAC TGCCTTTATA TGGGGGATTA
CTAAGGTCAT TTATATTTGG GAGTTTATCT GGTCATCATT GACGGGTCCT TGGCATGTTT CTGAGTGACT ATAATTATCA
TACCTTAGAC AATTGCTTTA AAATTATTTA TGCAAATATA TTAGATCAAT TCCTTTTATA TTTTAAGTTC ACTGTTTATA
TACTTTGCAT TTATTGTGCA TTTCCTTTTG TTTTCACTCC ATTGTTTTAT TGTCCACTTT TATACTCTAG AATGCTTCAA
GAAGATTTGA CTGATGAGAT GGTGGTGTTG GCAAAACAAC TCAAAGAGAG TAGTCTCATG ATGAGCCAGA GCCTGCAAAA
TACTGAAAAG GTTCGATTCT TATATTTTTA TTCAATCCCA CCGCTAAATG GTTGTGCAAG ATGGTGATGC TCACTAAATG
TATCATATTA TAGCATGGTG AGAGTGAAGG AAGGGGATTT TTTGTTAATA CCTCACTTTG TGGCCGTGGT GATACTGACT
AATGTCATCC AGGACAAAGT TTATTAGAAG AAAATCTTCT TTTATATTCA ATAAAGTTTT ATCTTATTGT TTTACAATTG
AAATGTATCT TTTCTGAAAG GTGATCTTGA TAGGAGTGAG TTACAATATA GATCCCTGGT GTTTTCGATC CTCCTGATTT
GAATATATAT GAAATGAAAG CCAATCCAAT TCACGATTGA ATATTCTATG TATGGTGGTT ACATTATTAC ATTAGTCTAG
TTTTCATCTT CTTGAAAGTT CGGCTTAGAT TTATTTTTGT ACTGCAGAGT ATGGCTATAG CAGTGCTGTA ATATTACTTC
TACATGTTAT GTTGATTCAA TAGTCATTAC TCAACCTTGT TGAAATGGCG AGGCGTGAAC CTAATAAATT GATTGTGCTG
GCTTGCAGAT ACTTGATTCT ACTGAGAAGG CCATTGAGCA TAGTTTGGCA AGCACCGGTC GGGCCAATGT GCGAGCAACG
GCAATCTATT CAGAGAGTTC CAAGACTTCT TGTCTAACAT GGCTTGTGAT GTTTGTGATG ACATGCGTAT TTGTCATGGT
TATTCTTCTA ATACGTGTAA CATAGTGCAC TTCTGTTTCA CTGAGTGAAA CAAATAACTT CCAATATAAC TTTTCCTATA
ATGTAAATTG TTATATTTCA TTCACTGATA ATGAATTTTG AAAATGTTGA CATAACCAAA CAATTTTTTC TAAGGAAGTG
TTTTAAATGA GCTTTTACCC TA

>Vigan.01G485500.01
ATCTGGGTTC GGGTGTTAGG TAATATCATT CTGAATCATG GTGAAAAGAA AAATTCACGG ACCCTTAACG TTCTTAACTT
CCTTTACTTA ATCAAACTCT GAAACTCCTT ATTCAAACTC CGAATATATT TCCAGAATTC TCCAATTTTT CCAAAGCCCT
AACAACTGAA AACCACCACA TTGCCCAAAT TCCAAATCGC GACTGAAGTT TGTTCTTTCT CGCTTCGAAC AGACATTTGG
AGAAGCTTAT GGGAGTCGAA CGTTGGCACT AGAGTCACGC GCGGGGGAGT TGAACGGTGA CCAAAATAGA TTCTAGGGTA
CGCGTGTAAA GTGATCAAAA ATCAAGAGTA GGATATGCGA TAGAACTTCA TCGTCCATAG GGTAAGTTGT CTACCTTTTG
CTCTTTCAAC TTCAATGTGA TCTACTGCGA AAGCATGTTG GTTGTCATGA GATATAAACT AGGTTTTATT TTCCCTTTTA
ATTCAGTCAA ATCATTGGTT GCTGTAGTTC TCTTTAGGGA TATGCAGATA AGTCTTAGAT CATGTTATAT AACCACCCAC
GATGCTGAGC TTGTAAATCG TGGGTTTGAT TATTTTACCG ATGGACAATT ATATTTCTTC CTTCTTTGTA CTTTTCCTTT
TTGTTTCACT CTTAATCTAA TAGAAGCTTT GGTCTTTGTT CAATGGAACG TTCTAGTTTT AATTTTAATT ACAGTGTATA
TATCACTAGA AATTGGCATT AATTGATTTA TTTAATCTGT ATTATGTAAA AGTATAGTTT ACTGCTGCAA AAAGATGCAC
CGGTATGCCC ATGTTTGGAA GCAAAGTTTA TTTCTCAACT TTAAACTTGT TGAAATGGTT TCGTTGATAT TTAGGACTTC
TGGTTGAGTT TAATTTGGGT AACTTGACCG GATAGGCTTT ACCGATAAGC GATAATTGTT TTCAGAGTGA TACATAATCG
CCTTTGTTTG TTTGCTTAAT GATGTTTAAT TTATAGATCA TTTATATAAC TTCTGAACAC TATAGATATG GGAATCAGTA
AAACAGAAGT AAACTTAAGG AGGTTGCTTG CAGCTGCTCC TCAACAGCAA AACCAGGCAA AACTGGTGCA TTATGTTGCT
ACTTTACGTG AACAATTGGA GCAATTGGGT GAAGAAAAGA CACCAGAGGG CTTACCAAGG ATTTCAAAGG CTACGTTGAT
TGAGTACTCA GAGAAGGTTG AAGCCATTGC TTCCAAATTA GTTAACCACG TGACTGACCA ACAAGTATCC GAGAAGGCTT
TTGAGAGGAG TTTTGTTGAA GAAAACTCTT CTGAAATTGA GGAAAAAAAG CAGATACCCC TTTCGTCTGG GTTGAGAAGA
AGACCTGTAC CCACATCATA CACAGAAGAT AAAGTACACG ACCTTGCTGA GACTGACAAT ACATCACCTG TCAAACTGGA
TGCTAGTGCA CACGCACACA TTGAAAAGCA CAGAATGCTT CAAGAAGATT TGACTGATGA GATGGTGGTG TTGGCAAAAC
AACTCAAAGA GAGTAGTCTC ATGATGAGCC AGAGCCTGCA AAATACTGAA AAGATACTTG ATTCTACTGA GAAGGCCATT
GAGCATAGTT TGGCAAGCAC CGGTCGGGCC AATGTGCGAG CAACGGCAAT CTATTCAGAG AGTTCCAAGA CTTCTTGTCT
AACATGGCTT GTGATGTTTG TGATGACATG CGTATTTGTC ATGGTTATTC TTCTAATACG TGTAACATAG TGCACTTCTG
TTTCACTGAG TGAAACAAAT AACTTCCAAT ATAACTTTTC CTATAATGTA AATTGTTATA TTTCATTCAC TGATAATGAA
TTTTGAAAAT GTTGACATAA CCAAACAATT TTTTCTAAGG AAGTGTTTTA AATGAGCTTT TACCCTA

>Vigan.01G485500.01
ATGGGAATCA GTAAAACAGA AGTAAACTTA AGGAGGTTGC TTGCAGCTGC TCCTCAACAG CAAAACCAGG CAAAACTGGT
GCATTATGTT GCTACTTTAC GTGAACAATT GGAGCAATTG GGTGAAGAAA AGACACCAGA GGGCTTACCA AGGATTTCAA
AGGCTACGTT GATTGAGTAC TCAGAGAAGG TTGAAGCCAT TGCTTCCAAA TTAGTTAACC ACGTGACTGA CCAACAAGTA
TCCGAGAAGG CTTTTGAGAG GAGTTTTGTT GAAGAAAACT CTTCTGAAAT TGAGGAAAAA AAGCAGATAC CCCTTTCGTC
TGGGTTGAGA AGAAGACCTG TACCCACATC ATACACAGAA GATAAAGTAC ACGACCTTGC TGAGACTGAC AATACATCAC
CTGTCAAACT GGATGCTAGT GCACACGCAC ACATTGAAAA GCACAGAATG CTTCAAGAAG ATTTGACTGA TGAGATGGTG
GTGTTGGCAA AACAACTCAA AGAGAGTAGT CTCATGATGA GCCAGAGCCT GCAAAATACT GAAAAGATAC TTGATTCTAC
TGAGAAGGCC ATTGAGCATA GTTTGGCAAG CACCGGTCGG GCCAATGTGC GAGCAACGGC AATCTATTCA GAGAGTTCCA
AGACTTCTTG TCTAACATGG CTTGTGATGT TTGTGATGAC ATGCGTATTT GTCATGGTTA TTCTTCTAAT ACGTGTAACA
TAG

>Vigan.01G485500.01
MGISKTEVNL RRLLAAAPQQ QNQAKLVHYV ATLREQLEQL GEEKTPEGLP RISKATLIEY SEKVEAIASK LVNHVTDQQV
SEKAFERSFV EENSSEIEEK KQIPLSSGLR RRPVPTSYTE DKVHDLAETD NTSPVKLDAS AHAHIEKHRM LQEDLTDEMV
VLAKQLKESS LMMSQSLQNT EKILDSTEKA IEHSLASTGR ANVRATAIYS ESSKTSCLTW LVMFVMTCVF VMVILLIRVT
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