GBrowse Details

Vigan.01G459500.01

Basic Information:
Name: Vigan.01G459500.01
Multiple alignment
Variant Information
Position: Chr01:58920265..58923733 (- strand)
Length: 3469
Functional Information:
Description: Similar to Uncharacterized protein. [K7MKW7, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
InterPro: Zinc finger, Dof-type (IPR003851)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.05,0.79,12.75,32.10,7.61,2.35,4.24 ,14.14
Automatic updates:
Name: NM_001317560 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cyclic dof factor 3 (LOC778113), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:58920265..58920823 (- strand)
Length: 559
Type: three_prime_UTR
Position: Chr01:58920824..58922098 (- strand)
Length: 1275
Type: CDS
Position: Chr01:58923373..58923510 (- strand)
Length: 138
Type: CDS
Position: Chr01:58923511..58923733 (- strand)
Length: 223
Type: five_prime_UTR

>Vigan.01G459500.01 class=Sequence position=Chr01:58920265..58923733 (- strand)
GTACTACCAG AATCGAACAT GGCCAAAAGA AAATCTAATA GAAGCCACAA GAATTCGTGG CCAAGAATTG AAACCTAGTT
CTGACGTGGC ATCTCATTCT GCTTTAATCG GATCAAAATC CTATTCGTCG TGTTTCCACT GACACTTCGC AACACAATCA
CATCCCAAAC CAAGTAACTA ACTCGCTGCC ATCTCCCACT TTTCGATTCG ATCCCCCAAA AAAATGCACG AAATTAGAGA
TCCTGCAATT AGGCTCTTCG GCCAGAAGAT CCCCTTCCCT GAAGATGTTG ACATAGAAGA AGAAGAAGAG GAAGAAGATG
AGAGTGGTGA TGGAAAAGAG GAAGAGAAAG AAGAGGATAA GGTATGGTTT GTAGTGTGTC TCAGAAAATT GTTTTCAGAA
TCAAACCAAC GTTTTTTGTG ACGTACACAC AACACCCTTT CCTTCTAATG CTAAAACCTC TCATGGGTCC GTTTTGTCTC
TTCGTTTTTC CTTTATTTGC ACACATCACA ACAACCTACC TCCCTACTCG TCTGCTTTTT TTTAAAAAAA TTTCGTTTCT
ACCTCAATTT TTACTCCTCA TGTTGTTCTT CAATGGAAAA CTTGTACCCT TCTGTTAATT TTTGTCAATT CCAATTGGAA
ATTGATTTAA CGAAAGTTCC CAATTTGCGT AATTTTTTGC TAATTAGGTA GTTTCAATTC AATGTTCTCG AAGTAAATTG
GTCGGATGTT AAAAGAAAAA TCTGTTTTTT TTTCAATTCC AAAATTGGCT TATTTTTGTA CAAAATAATA GGTTTAGTAA
CCTTGCTAAG AATTGAAGTA AAAATTGTAT TTCAAACCGT TCGTAGACAG CAAACTTTCT CGTGTTCTGA TTTTGCTGAT
TGTGATAAAT TTTTTGGAAC ATTTTGACGT TTGAGTGGTG ATCTGAACAA TCTACCCAAC AATTTCAGTC AACTCTGTCT
GCAGAACAGG AACATCACTG TTTTTTTTTC TCATCCACTT GTTTTATTGT TTCAACTCTA TGTACATGTT TACTTCATTG
TCCTGCTTAA AACCAGTGTT TTCTGTCGGT ACAATCCTAC TCTCATCCAA ATCTGTGCTA ATAATCCGCT ATGTGACTGT
AAGGGGTTTC CTTTCTGTAC CTTTCTTTGC CACTAAAAAT TGATATTTTT TTTTCGCTTG GATCATTCAG CTAACACTTC
ACAGCTAAAT TATCTATATA GTTCCTTGAG TTCCTGCATC AAGTATTTTT TTTAGACCGT GGAATTGTTG TATTGTGTAT
TCTGGAATGT TAAGAACAGG GAACTTTATA CTGTATGTAA GAATGGTTCC AGTATAATTT TTCATTGGTC TTGCTTATAT
TTTTACACTG TCAAATTGCA TAGATACTTC TATAAGATCG GCTTTTTGAG TTTTTTCCAC TGAAAAATTG AACATATTTT
CTGAGTATGG TCAGAGGTTT TCAAATTTTG GTTTTCTTTT ATGCAATATT TCTTCAAAAA GACTGCTCTA CCTTCCTTAT
TACCCAATAC TATTGTTTTT CCTGTTATGA CAATTGTGAA CATGTATATC TTGGTTTTGT TTATGCAATT CAGAAGCATT
CATTTTAGTG AGCAAAACAT GTTTTATATT ACTAGGATGC TGGAGTTGAA AATGTTACTG AGGAAGACCT AGAAGCTGAT
CCTTCTCCGA GTGCAGGAGA GACTAAAGAT TCAGGTACAT CCCCTGAGGC TATTGTGAAC CCCAAAACAC CTTCCATAGA
AGAAGAAACG GCAAAATCAA AAGCTGACAA ATCAGAGAAG GAGCAAGGCG ATGCGGCTAA CTCACAAGAG AAAACTCTGA
AGAAACCAGA TAAAGTGCTA CCATGCCCCC GCTGCAAAAG TATGGACACT AAGTTTTGTT ACTATAACAA CTACAATGTC
AACCAGCCAC GTTATTTCTG CAAAGCTTGT CAAAGATACT GGACTGCAGG TGGCACCATG CGGAATGTTC CTGTGGGGGC
AGGGCGGCGA AAGAACAAGA ACTCTGCCTC GCACTATCGC CACATCAGTA TCTCTGAGGC CCTTCAAGCA GCCAGAATTG
ATTCTCCCAA TGCAACTCAT CTTCCACCTT TGAAAGGCAA TGGTAGAGTT CTCAGCTTTG GATTAGATGC ACATGCACCG
ATTTGTGATT CCATGGCATC TGTCCTCAAT CTTGGAGAGA AAAAGGTTCC CGATAGCACA ACAAATGGGT TTCAGCATGG
CTTTGAGGAC CAAAGACTCC CTATTCCTCG CAAAAGCGGG GAAAATGGTG ATGACTCTTC GAATACATCT TCCATTACAG
TTTCCAATTC CATGGGAGAA AGTAGCAAAA GCACCTTCCA ACCACAACCA GTGCTCCAAC ATCATGGTTT CCTTCCTCAA
CTTCCGTGTG TTCCTTGGCC CTATACATGG AATTCTCCCG TTCCCCCACC TGCTTTATGT CCTTCCGGAT ATGCCTTATC
ATTCTATCCT CCTGCTACAT TCTGGAACTG TGGAATGCCA GGGAATTGGA ATGTTCCATG GTTTTCTTCA CTTTCATCTG
CTTCAAACCC GAACTCTCCG GGCTCCGCTC CAAACTCTCC GACTCTGGGG AAGCACTCGC GGGACGGAGA CATGATCAAG
CAAGACTCTT TGCACAAAGA AGAAGCTTCA AGGCCAAGAA ACGGGGGTGT TTTGGTTCCA AAAACGTTGA GAATCGATGA
TCCAAATGAA GCTGCAAAGA GTTCTATATG GGCAACTCTA GGAATTAAGA ATGAGTCAGT AAGTGGGGCA GGTATGTTTA
AGGCCTTCCA ATCAAAGAAG GAGGAAAAGA ATCATGTTGA AGCCTCTCCA GTGTTGATGG CCAACCCTGC AGCTTTATCA
AGATCCCTCA ATTTTCATGA GAACTCATGA ATTAATGGCA CCTGTTAGAA GTCCTTTTTG CAAGGTTAGT CACTTATAGT
GTATCCAGCA AGAGACGGTG ACCATCTTTG AGTGAAGGAT TATTGATTTG CTTCGTTGAC CGTGTATAGA AGAACCGAAA
GGGTGGTACT CTCTGATTTC CTCAGCAAGC ATAAGTGGAC GGCGAGGACT AATTTTGTCT TTATTTTATT TGACATTATG
AATAGAATAT ATAGGTTATT TTTAATGTGG TTAGTTTGAA AAGTTTGAGT TCATGTGCAT GTATAAAAGT ATATATGTGA
AATACTGATC TTTTAGGCCA GAGATGGAAA AGATCTTTCA CGTTGTATAA AAATCCAGAT ATTGTACATG TTTCGGTACT
CAGTAGAAAA GTTCTGACTT TCGGAGTATT GCCTCTCTCC CTCTGTCTGA ACGAACAAAG ACAGAGATAT TTGCTATCCG
TAAATTGGGG ACCAAAAACT ACAGAACTAG GAAGATAAGC ACAGCCAATA CCATCATAAA AGTAATGGAT ACCGCACTCT
TGATTGTCTT GTCACACTTT CATATGCTG

>Vigan.01G459500.01
GTACTACCAG AATCGAACAT GGCCAAAAGA AAATCTAATA GAAGCCACAA GAATTCGTGG CCAAGAATTG AAACCTAGTT
CTGACGTGGC ATCTCATTCT GCTTTAATCG GATCAAAATC CTATTCGTCG TGTTTCCACT GACACTTCGC AACACAATCA
CATCCCAAAC CAAGTAACTA ACTCGCTGCC ATCTCCCACT TTTCGATTCG ATCCCCCAAA AAAATGCACG AAATTAGAGA
TCCTGCAATT AGGCTCTTCG GCCAGAAGAT CCCCTTCCCT GAAGATGTTG ACATAGAAGA AGAAGAAGAG GAAGAAGATG
AGAGTGGTGA TGGAAAAGAG GAAGAGAAAG AAGAGGATAA GGATGCTGGA GTTGAAAATG TTACTGAGGA AGACCTAGAA
GCTGATCCTT CTCCGAGTGC AGGAGAGACT AAAGATTCAG GTACATCCCC TGAGGCTATT GTGAACCCCA AAACACCTTC
CATAGAAGAA GAAACGGCAA AATCAAAAGC TGACAAATCA GAGAAGGAGC AAGGCGATGC GGCTAACTCA CAAGAGAAAA
CTCTGAAGAA ACCAGATAAA GTGCTACCAT GCCCCCGCTG CAAAAGTATG GACACTAAGT TTTGTTACTA TAACAACTAC
AATGTCAACC AGCCACGTTA TTTCTGCAAA GCTTGTCAAA GATACTGGAC TGCAGGTGGC ACCATGCGGA ATGTTCCTGT
GGGGGCAGGG CGGCGAAAGA ACAAGAACTC TGCCTCGCAC TATCGCCACA TCAGTATCTC TGAGGCCCTT CAAGCAGCCA
GAATTGATTC TCCCAATGCA ACTCATCTTC CACCTTTGAA AGGCAATGGT AGAGTTCTCA GCTTTGGATT AGATGCACAT
GCACCGATTT GTGATTCCAT GGCATCTGTC CTCAATCTTG GAGAGAAAAA GGTTCCCGAT AGCACAACAA ATGGGTTTCA
GCATGGCTTT GAGGACCAAA GACTCCCTAT TCCTCGCAAA AGCGGGGAAA ATGGTGATGA CTCTTCGAAT ACATCTTCCA
TTACAGTTTC CAATTCCATG GGAGAAAGTA GCAAAAGCAC CTTCCAACCA CAACCAGTGC TCCAACATCA TGGTTTCCTT
CCTCAACTTC CGTGTGTTCC TTGGCCCTAT ACATGGAATT CTCCCGTTCC CCCACCTGCT TTATGTCCTT CCGGATATGC
CTTATCATTC TATCCTCCTG CTACATTCTG GAACTGTGGA ATGCCAGGGA ATTGGAATGT TCCATGGTTT TCTTCACTTT
CATCTGCTTC AAACCCGAAC TCTCCGGGCT CCGCTCCAAA CTCTCCGACT CTGGGGAAGC ACTCGCGGGA CGGAGACATG
ATCAAGCAAG ACTCTTTGCA CAAAGAAGAA GCTTCAAGGC CAAGAAACGG GGGTGTTTTG GTTCCAAAAA CGTTGAGAAT
CGATGATCCA AATGAAGCTG CAAAGAGTTC TATATGGGCA ACTCTAGGAA TTAAGAATGA GTCAGTAAGT GGGGCAGGTA
TGTTTAAGGC CTTCCAATCA AAGAAGGAGG AAAAGAATCA TGTTGAAGCC TCTCCAGTGT TGATGGCCAA CCCTGCAGCT
TTATCAAGAT CCCTCAATTT TCATGAGAAC TCATGAATTA ATGGCACCTG TTAGAAGTCC TTTTTGCAAG GTTAGTCACT
TATAGTGTAT CCAGCAAGAG ACGGTGACCA TCTTTGAGTG AAGGATTATT GATTTGCTTC GTTGACCGTG TATAGAAGAA
CCGAAAGGGT GGTACTCTCT GATTTCCTCA GCAAGCATAA GTGGACGGCG AGGACTAATT TTGTCTTTAT TTTATTTGAC
ATTATGAATA GAATATATAG GTTATTTTTA ATGTGGTTAG TTTGAAAAGT TTGAGTTCAT GTGCATGTAT AAAAGTATAT
ATGTGAAATA CTGATCTTTT AGGCCAGAGA TGGAAAAGAT CTTTCACGTT GTATAAAAAT CCAGATATTG TACATGTTTC
GGTACTCAGT AGAAAAGTTC TGACTTTCGG AGTATTGCCT CTCTCCCTCT GTCTGAACGA ACAAAGACAG AGATATTTGC
TATCCGTAAA TTGGGGACCA AAAACTACAG AACTAGGAAG ATAAGCACAG CCAATACCAT CATAAAAGTA ATGGATACCG
CACTCTTGAT TGTCTTGTCA CACTTTCATA TGCTG

>Vigan.01G459500.01
ATGCACGAAA TTAGAGATCC TGCAATTAGG CTCTTCGGCC AGAAGATCCC CTTCCCTGAA GATGTTGACA TAGAAGAAGA
AGAAGAGGAA GAAGATGAGA GTGGTGATGG AAAAGAGGAA GAGAAAGAAG AGGATAAGGA TGCTGGAGTT GAAAATGTTA
CTGAGGAAGA CCTAGAAGCT GATCCTTCTC CGAGTGCAGG AGAGACTAAA GATTCAGGTA CATCCCCTGA GGCTATTGTG
AACCCCAAAA CACCTTCCAT AGAAGAAGAA ACGGCAAAAT CAAAAGCTGA CAAATCAGAG AAGGAGCAAG GCGATGCGGC
TAACTCACAA GAGAAAACTC TGAAGAAACC AGATAAAGTG CTACCATGCC CCCGCTGCAA AAGTATGGAC ACTAAGTTTT
GTTACTATAA CAACTACAAT GTCAACCAGC CACGTTATTT CTGCAAAGCT TGTCAAAGAT ACTGGACTGC AGGTGGCACC
ATGCGGAATG TTCCTGTGGG GGCAGGGCGG CGAAAGAACA AGAACTCTGC CTCGCACTAT CGCCACATCA GTATCTCTGA
GGCCCTTCAA GCAGCCAGAA TTGATTCTCC CAATGCAACT CATCTTCCAC CTTTGAAAGG CAATGGTAGA GTTCTCAGCT
TTGGATTAGA TGCACATGCA CCGATTTGTG ATTCCATGGC ATCTGTCCTC AATCTTGGAG AGAAAAAGGT TCCCGATAGC
ACAACAAATG GGTTTCAGCA TGGCTTTGAG GACCAAAGAC TCCCTATTCC TCGCAAAAGC GGGGAAAATG GTGATGACTC
TTCGAATACA TCTTCCATTA CAGTTTCCAA TTCCATGGGA GAAAGTAGCA AAAGCACCTT CCAACCACAA CCAGTGCTCC
AACATCATGG TTTCCTTCCT CAACTTCCGT GTGTTCCTTG GCCCTATACA TGGAATTCTC CCGTTCCCCC ACCTGCTTTA
TGTCCTTCCG GATATGCCTT ATCATTCTAT CCTCCTGCTA CATTCTGGAA CTGTGGAATG CCAGGGAATT GGAATGTTCC
ATGGTTTTCT TCACTTTCAT CTGCTTCAAA CCCGAACTCT CCGGGCTCCG CTCCAAACTC TCCGACTCTG GGGAAGCACT
CGCGGGACGG AGACATGATC AAGCAAGACT CTTTGCACAA AGAAGAAGCT TCAAGGCCAA GAAACGGGGG TGTTTTGGTT
CCAAAAACGT TGAGAATCGA TGATCCAAAT GAAGCTGCAA AGAGTTCTAT ATGGGCAACT CTAGGAATTA AGAATGAGTC
AGTAAGTGGG GCAGGTATGT TTAAGGCCTT CCAATCAAAG AAGGAGGAAA AGAATCATGT TGAAGCCTCT CCAGTGTTGA
TGGCCAACCC TGCAGCTTTA TCAAGATCCC TCAATTTTCA TGAGAACTCA TGA

>Vigan.01G459500.01
MHEIRDPAIR LFGQKIPFPE DVDIEEEEEE EDESGDGKEE EKEEDKDAGV ENVTEEDLEA DPSPSAGETK DSGTSPEAIV
NPKTPSIEEE TAKSKADKSE KEQGDAANSQ EKTLKKPDKV LPCPRCKSMD TKFCYYNNYN VNQPRYFCKA CQRYWTAGGT
MRNVPVGAGR RKNKNSASHY RHISISEALQ AARIDSPNAT HLPPLKGNGR VLSFGLDAHA PICDSMASVL NLGEKKVPDS
TTNGFQHGFE DQRLPIPRKS GENGDDSSNT SSITVSNSMG ESSKSTFQPQ PVLQHHGFLP QLPCVPWPYT WNSPVPPPAL
CPSGYALSFY PPATFWNCGM PGNWNVPWFS SLSSASNPNS PGSAPNSPTL GKHSRDGDMI KQDSLHKEEA SRPRNGGVLV
PKTLRIDDPN EAAKSSIWAT LGIKNESVSG AGMFKAFQSK KEEKNHVEAS PVLMANPAAL SRSLNFHENS *