GBrowse Details

Vigan.01G425400.01

Basic Information:
Name: Vigan.01G425400.01
Multiple alignment
Variant Information
Position: Chr01:55923423..55927017 (+ strand)
Length: 3595
Functional Information:
Description: Similar to Alcohol dehydrogenase. [G7I3F7, Medicago truncatula]
InterPro: Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.41,6.38,43.25,17.42,53.58,38.92,48.99,20.93
Arabidopsis thaliana homolog: AT3G01980.3
Automatic updates:
Name: NM_001255941 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max levodione reductase-like (LOC100791032), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:55923423..55923485 (+ strand)
Length: 63
Type: five_prime_UTR
Position: Chr01:55923486..55923577 (+ strand)
Length: 92
Type: CDS
Position: Chr01:55923662..55923867 (+ strand)
Length: 206
Type: CDS
Position: Chr01:55923963..55924192 (+ strand)
Length: 230
Type: CDS
Position: Chr01:55926292..55926570 (+ strand)
Length: 279
Type: CDS
Position: Chr01:55926571..55927017 (+ strand)
Length: 447
Type: three_prime_UTR

>Vigan.01G425400.01 class=Sequence position=Chr01:55923423..55927017 (+ strand)
TGCTAATTAG GATTTGACTG AGAAAGTTGG TTGGAGTTCA AGCCAGAAAG TTGTTGAGGA AGAATGGAGA AGTCAGGGAA
GAAAGTGCTG CTGACCTCAA ATGGCGACGA AGTTTCGCAG GGTATCGTTT TCCATTTAGC TAAGCAAGGG TGCAGGTGAA
CTCTCTCGCT TCCGAACACT TTTTGCTATT TCTTCCTTTA TTAGTTTCTT ATTTGGTAAT GCATGATCGA TCCCTTCAGG
TTGGTTTTGC TGGGAGATGA GAGTTGCCTG CGGAGCATCG CGCACAGAAT CATGGATTCC CTCTCCCTAT CTGACAAAGG
CACTGTGCAG GTCGTTGAAT TGAACATGGA AGACCAGAGC GAATCGGTTT TCCAACACTC TGTTGATCAG GCATGCCAGA
TTTTGGGGAA ATTGGATGCT TTTGTCAACT GTTACAGTTA CGAAGGTAAA TTGTTATGAC ATGAATGAGG TATTGTTGCT
TGAGGAACGA ACGTGAACAT TTGAGCTTAA TTGAATTGGG CTTCCGACAA TTCTTGACAG GAAAAATGCA AGAGCATATT
GAGTTAGCTG AGAGTGAGTT TAAGAAAATA GTGAAGATAA ATTTTATGGC TGCTTGGTTC TTGTTAAAAG CTGTTGGCCG
AAGGATGCGG GATATCAACG CCGGGGGCTC CATCGTCTTT TTAACCTCCA TACTTGGCGC TGAAAGGGGT TTGTATCCGG
GAGCTGCTGC ATATGCCTCT GTCTTGGCAG GAGTGCAGCA ATTAGTGAGG GTAAGACTAA TTATAACTTT CTTTTTTTAG
TTTTAGTTTT TGCTTCTACA AATCACCTCG TAATTGCGAT TGATATTGTT TAATTTTTAT TTTTAAATCG GTGTATCAAA
TTTCGTGCAT TTTATACCTA GGTTTTGTTT GCATAGGGTT TTTCGATAAT TATTTATAAG AGAAAAAAAA GTTAGACTTT
TTTTCTAAAA TAAACTTATA TAGCTTAACT TTTGAGGTGC ATTTTACTCT GCAGAAGAAG TTAGATTTAT TTTAGCTTTT
CGTATTCTTC TCTTATAGAA ATTGAGATTT TCACGACTTA GAGATAAGAC GTGTCCTAGT GTGTAACGGA GTTTCTTACA
AAAAATTTTG TTGACATTTT GTTCAGAGAA CGTGGTTCTC TATGCAGTTT GAAACTAATT ACACCCGAAT CATTCTTTTT
ACCTTTGTTG GTTGTTAAAA AAATAAGAAT TTTCAGAAGG ATGATTCAAT TGCAATCCCT TGTTCACTAT CTCACCCTGC
AGAAGGGTAA AAATATAGGA ATATTACGTG ATCATGGATA TGGAGGGACC ACTTCAAACT ATGGATGAAG ATAAATGAAA
GGAGGTAAAG GAAGAGCTCT ATATGGCGAA AGAACTCTTG AAGAAAATAG ATAGAACTTA CGTGTAATAA ACTCTTTGTT
TAGGTATAAG GTTAGCTAGG AAAGATGTTA GAAGAGACTT CTTAGTTAAT AGCCTTGTGT TTGGTCACTT TGTAAACACT
TTTACTTTGA TTAGAAATAA AAAGTAATTT GAGAACATTT GCAGTTAAGC TTGAGAACTT GTGAAAAGTA GAGAGTTTCT
CCCCTTAAGA TTCTTATCTT GATAGTTAGG TCTCAAGAAC AATTATCACA TCCTTGTTTA TCTCTTGAGT TGGAGTGGTG
CAAGATTCTT GGACTTCTAG CCTCTTTTTG AATTATAATC TCGTTAACTT TCGGAAGGTA ATCTTTCCTT CTTTATTCTT
TTCTTTCGTT TTCTTATAAT TCTCTCCTTT TTTTTTATCA GCTTCTAAGT CTCTCGGAAG GTAATCTCCT TTTTTCTAGC
TTCTTTATTT TTCTTCGAGT CCGTGCATAA TACAGACATG CTTGACCACC CAAAAACACT AGCCACCAAC TTGAATTTGG
CTAGCGACAA AAACCCTTCA CTAATCCTAC CTTAAACTCC CACCCTTATG AGTTCCTGAA ATCATCTTCT ACTCCTGCAT
AAACCTTTAC ACAGATCCAC AAAGAACACC TCAAGAAACC TTCCAAGATT CAATAACAAT GAACCAATAA ACACCCTTTA
ACCAAACCAT GGATTCTAAC CTTGAAGCTT GAGATAGTCA ATCAACTTCC TTAAGTTCTC ATCATGACCA CTATTAAAAC
TTCTGATCCC CTTTCTGTTT CATCTACCTT AATAGTTATC CCCATCTATT TTGTAATTCT GTTACCTTTA TTTTTTCTAT
CATATACACC AAATATGTAA TTTATTCTTG TAATCTTTCT ACGTGGAAGA CCGCTTCTAT TCTAAACTTC TGTAGAAAAT
TCATGAATAT AAAGGATCTG ATTTGGTAAT TGAATTGGAT GATAAGGCTG TGATCAATAT AAAATTGATT CGAATGAAGT
GGAAGAGTGG GCAACATGGT GGCAAGATTT GATTTGGCGA AGGTGATATG CCCCAATGCG GTGCTTGTTT TAGAGTTATT
TTGATTAGTT TCCGAAAGCA AAAGAAAGAG GTGATATTGA TCTGCCAAAT TGGAATGCTT TTGGCCGGTT AACAAATTTA
TGTAGCTACA ATAGAGGTGC TATAAGGCAT GATAAAATTC ATCTTATGTG TTCTTGATTG ACCATGAACT TTCCCTGTTG
CACTTTGGCT AAAGCTAAAG CCCATACTAG TAGTACACCA AACTAGAAGT TCCTGTTCTT CTGCACTGAA CTTCTGATAT
TTAAGCCTCT GATATCTACT ACTGCTGAAT AATTAACTAA GTAGGCAACC ACACAATCCA ATAGTTCCGT GTCAAATTTG
GAAATATTAG ACAGGTTGGT TGGTACACTT TGATGTTATT CCTATCTAAT ACTACTTGTT TATCTTCAGG CTTCGGCTTT
GGAGATAGGG AAGTACCAGA TCAGAGTTAA TGCCATTGCC CGAGGCCTGC ACCTGCAAGA TGAATTTCCA TTATCCGTGG
GAAGGGAAAG AGCAGAGAAA TTGGTGAAGG AGGCTGCACC GCTTGAGAGA TGGCTTGATG TTAAGAATGA TCTGGCGTCT
ACTGTCATTT ATCTAATCAG TGATGGATCA TGCTACATGA CTGGAACAAC CATATACGTC GATGGGGCAC AGTCTATAAC
CAGGCCTCGC ATGCGCTCCT TTATGTGAAT CATGCTGGCG CTGAAAGGAT TTTTTCAAGG AATGATCCAA CATACACATT
TCTTGCATCA TTGTTGCCCT TAGGAAATGA CTACATTTCT AATCCAAGTC TTAAACCTTA AACCCCGAAA AACATGTCCG
GGGGGCATGA AATATATATT CAAATAAGTT ATGAGAAGTT GAAACTGCTC AATCCATAAT TATATAGTGA ATGTTAAGCA
GCTGCACTTT TGTTGACCAA GTTTGTGGAG ACTGTATGAC TGTGTGCAAT GGATCTATCA GTCTTATAGC AGGCGGTGGT
ATGTCAAAAA AGTAAATCAT AAAAAAAAAT ATAAAGTATT CCATTAATAT TATTGTGTGT CTATATATAA AATTTGGGAT
TTGCTATCTG ATTTACATTT TTTTATAGTT AAAATGCCTA AAAAGACTAC ACTAAAATTC AGAACAACTC TTTCA

>Vigan.01G425400.01
TGCTAATTAG GATTTGACTG AGAAAGTTGG TTGGAGTTCA AGCCAGAAAG TTGTTGAGGA AGAATGGAGA AGTCAGGGAA
GAAAGTGCTG CTGACCTCAA ATGGCGACGA AGTTTCGCAG GGTATCGTTT TCCATTTAGC TAAGCAAGGG TGCAGGTTGG
TTTTGCTGGG AGATGAGAGT TGCCTGCGGA GCATCGCGCA CAGAATCATG GATTCCCTCT CCCTATCTGA CAAAGGCACT
GTGCAGGTCG TTGAATTGAA CATGGAAGAC CAGAGCGAAT CGGTTTTCCA ACACTCTGTT GATCAGGCAT GCCAGATTTT
GGGGAAATTG GATGCTTTTG TCAACTGTTA CAGTTACGAA GGAAAAATGC AAGAGCATAT TGAGTTAGCT GAGAGTGAGT
TTAAGAAAAT AGTGAAGATA AATTTTATGG CTGCTTGGTT CTTGTTAAAA GCTGTTGGCC GAAGGATGCG GGATATCAAC
GCCGGGGGCT CCATCGTCTT TTTAACCTCC ATACTTGGCG CTGAAAGGGG TTTGTATCCG GGAGCTGCTG CATATGCCTC
TGTCTTGGCA GGAGTGCAGC AATTAGTGAG GGCTTCGGCT TTGGAGATAG GGAAGTACCA GATCAGAGTT AATGCCATTG
CCCGAGGCCT GCACCTGCAA GATGAATTTC CATTATCCGT GGGAAGGGAA AGAGCAGAGA AATTGGTGAA GGAGGCTGCA
CCGCTTGAGA GATGGCTTGA TGTTAAGAAT GATCTGGCGT CTACTGTCAT TTATCTAATC AGTGATGGAT CATGCTACAT
GACTGGAACA ACCATATACG TCGATGGGGC ACAGTCTATA ACCAGGCCTC GCATGCGCTC CTTTATGTGA ATCATGCTGG
CGCTGAAAGG ATTTTTTCAA GGAATGATCC AACATACACA TTTCTTGCAT CATTGTTGCC CTTAGGAAAT GACTACATTT
CTAATCCAAG TCTTAAACCT TAAACCCCGA AAAACATGTC CGGGGGGCAT GAAATATATA TTCAAATAAG TTATGAGAAG
TTGAAACTGC TCAATCCATA ATTATATAGT GAATGTTAAG CAGCTGCACT TTTGTTGACC AAGTTTGTGG AGACTGTATG
ACTGTGTGCA ATGGATCTAT CAGTCTTATA GCAGGCGGTG GTATGTCAAA AAAGTAAATC ATAAAAAAAA ATATAAAGTA
TTCCATTAAT ATTATTGTGT GTCTATATAT AAAATTTGGG ATTTGCTATC TGATTTACAT TTTTTTATAG TTAAAATGCC
TAAAAAGACT ACACTAAAAT TCAGAACAAC TCTTTCA

>Vigan.01G425400.01
ATGGAGAAGT CAGGGAAGAA AGTGCTGCTG ACCTCAAATG GCGACGAAGT TTCGCAGGGT ATCGTTTTCC ATTTAGCTAA
GCAAGGGTGC AGGTTGGTTT TGCTGGGAGA TGAGAGTTGC CTGCGGAGCA TCGCGCACAG AATCATGGAT TCCCTCTCCC
TATCTGACAA AGGCACTGTG CAGGTCGTTG AATTGAACAT GGAAGACCAG AGCGAATCGG TTTTCCAACA CTCTGTTGAT
CAGGCATGCC AGATTTTGGG GAAATTGGAT GCTTTTGTCA ACTGTTACAG TTACGAAGGA AAAATGCAAG AGCATATTGA
GTTAGCTGAG AGTGAGTTTA AGAAAATAGT GAAGATAAAT TTTATGGCTG CTTGGTTCTT GTTAAAAGCT GTTGGCCGAA
GGATGCGGGA TATCAACGCC GGGGGCTCCA TCGTCTTTTT AACCTCCATA CTTGGCGCTG AAAGGGGTTT GTATCCGGGA
GCTGCTGCAT ATGCCTCTGT CTTGGCAGGA GTGCAGCAAT TAGTGAGGGC TTCGGCTTTG GAGATAGGGA AGTACCAGAT
CAGAGTTAAT GCCATTGCCC GAGGCCTGCA CCTGCAAGAT GAATTTCCAT TATCCGTGGG AAGGGAAAGA GCAGAGAAAT
TGGTGAAGGA GGCTGCACCG CTTGAGAGAT GGCTTGATGT TAAGAATGAT CTGGCGTCTA CTGTCATTTA TCTAATCAGT
GATGGATCAT GCTACATGAC TGGAACAACC ATATACGTCG ATGGGGCACA GTCTATAACC AGGCCTCGCA TGCGCTCCTT
TATGTGA

>Vigan.01G425400.01
MEKSGKKVLL TSNGDEVSQG IVFHLAKQGC RLVLLGDESC LRSIAHRIMD SLSLSDKGTV QVVELNMEDQ SESVFQHSVD
QACQILGKLD AFVNCYSYEG KMQEHIELAE SEFKKIVKIN FMAAWFLLKA VGRRMRDINA GGSIVFLTSI LGAERGLYPG
AAAYASVLAG VQQLVRASAL EIGKYQIRVN AIARGLHLQD EFPLSVGRER AEKLVKEAAP LERWLDVKND LASTVIYLIS
DGSCYMTGTT IYVDGAQSIT RPRMRSFM*