GBrowse Details

Vigan.01G418300.01

Basic Information:
Name: Vigan.01G418300.01
Multiple alignment
Variant Information
Position: Chr01:55368671..55373711 (- strand)
Length: 5041
Functional Information:
Description: Similar to Calcineurin-like metallo-phosphoesterase superfamily protein isoform 2. [XP_007011986.1, Theobroma cacao]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Phosphoesterase domain (IPR004843)
Conserved hypothetical protein CHP04168 (IPR027629)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:29.73,13.65,12.02,11.90,61.43,7.23,30.06,10.44
Arabidopsis thaliana homolog: AT5G58200.2
Automatic updates:
Name: NM_001255836 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100797661 (LOC100797661), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:55368671..55369483 (- strand)
Length: 813
Type: three_prime_UTR
Position: Chr01:55369484..55369854 (- strand)
Length: 371
Type: CDS
Position: Chr01:55370156..55370230 (- strand)
Length: 75
Type: CDS
Position: Chr01:55370330..55370436 (- strand)
Length: 107
Type: CDS
Position: Chr01:55370844..55370969 (- strand)
Length: 126
Type: CDS
Position: Chr01:55371434..55371469 (- strand)
Length: 36
Type: CDS
Position: Chr01:55371834..55371948 (- strand)
Length: 115
Type: CDS
Position: Chr01:55372318..55372339 (- strand)
Length: 22
Type: CDS
Position: Chr01:55373385..55373435 (- strand)
Length: 51
Type: CDS
Position: Chr01:55373534..55373671 (- strand)
Length: 138
Type: CDS
Position: Chr01:55373672..55373711 (- strand)
Length: 40
Type: five_prime_UTR

>Vigan.01G418300.01 class=Sequence position=Chr01:55368671..55373711 (- strand)
GTAAAATAAG AGTCCTCTTT AGAGAAGGTT GTTCATACCC ATGTTGAGCG CGTGCATTCA CGCGTCTACC GTATTTCCCT
CCTTTATTAG TCACTGTGTG AGCCCGAAGA AGCTCGACCT CTCTTGCTCT TCAATGGCCG CGTCGTCCTC TATTCGAATC
GTCGTCGTCG GTGATGTGGT AAAGTAACCT CTTCCCACTT TCCAAACCCA ACTTTTGCTT CTCATGTTTG CTAGTTTTGG
GACAATGCCT ATGACCTAAT TTGGGGTTTT CTGAAGCATG ATTACTGGAA CTTTGAACAA GATTCCAAAG CGCTTGAGTT
CTTGCAGGTA CTTTTCTCCA TTATCCTGTT TCCATTTTCG TTCCCTGTTA ATGAAAAAGC TTATGCATAT TCTGCTGCCA
ACCCACGTGC CATTTGATTC AATCCTCGAT GCTGTGGGGT TCTGTGCTCT ATCTTCTCTT TCCTATTCTC ATTTCCATGC
TATTTAAGCT TACAAAAAAT ATGATAATTA TGATAAAAGA TTATAGACCA GAATAATAAT TTTGGTTATC CCAGTAAAAG
GGAAAAAAGC TGAGGTTGTT TGTTTTCATA GGGTGTTAAA AAATCTTACC TTGTTGTGAA ATGCAACTTC CCTAGTACTA
AAGGAAAATT ATCGTCACTT ATTTGCTATT ATTATTTTGG TCTTGGTTAC TAATAAACCT TATTTGGAAA TTTTATTATG
CCGAAGCTAA CCCGGTGCAG AGACTCCTAC TACCTCCGAG CCCCCTAAAC ACAAATACTT AAAAGAGGTT GCTACAAATG
GATGGATGTC CCTGTAATCT GCTGGGGATT GCTAAATTGG CTGTGTAGAT AGACATTGAG CGTGTTTGTA TAGAAAACTA
GTAGCGTTTT TGTGAACTTC TCTACTGAAA AACAAAACTA TATTTCCATT AGAGAAGCTC TAAAAAGTCT TTCTTACTTC
CATTCCCATA TAGACCAAAA TAATTAATAA ACAAAACCCC TATTTCTGGA GTCCAAGAGT CACTTGTAAT AGTAAAACAT
GTACCTGCTA AAATTAATTG GCTAGTTGCA CTTTGATGTA GAAAGGTTGT GTAAGATCAA ATCTTGGTTA GAGATTTGGG
AACAAAATGA TAAAGGAAAA ATTATAAGGA ACTAAAACTA GAGAAATCAA AATAAGAAGT AAGAACAATT TTTTTTTTTG
TCCTTTTTGC ACGCCATGAA GGGGAAAGAA AACAAAGAGA AAGTTGTGAT ATTGAATATT CATCTATCAT TAATTTCTAT
TAAGTTGATG CAACTACTTA ATGTACAATA TTATTGACTT GTTTTCTTAT ATCTGATCTA TCAATCTAAT CTAGTCCTAT
GTTGAAGTGC AGCCAGATTT GGTGCTGTTT ACAGGCAAGC TTCACTTTAC TGCTGATCAA CCTATCATAC TACAGTGATT
TTTCTTAAAT GCATTTAAGT GTCTTTACTT CCTCTATGCC TATTTTAATT GTTATGAAAA TAGCTGGTGT AGACCTATGA
AAAATCGGTG TCCATCTTGA AAATTGAATG CTATGGCATT GATCTGTTTA ACTTCTAAAT AACCTAGGAG TATGGTTTGC
ATTAATAGCC AGAGACCTGT ACAAATCAGC ATGTGCCAAG TTTATGGCCT GTTAATTTAT CTTTGTTGTA TAACTTATGA
TTTGTTATGA TTAATTTGTT ATTTGATTTA TCTGTGTATT ACTGTTTTCA TCCTTTTTCA ACTGTCACAT TCAATCTTGT
TAGGTGATTT TGGTGATGAA AATGTTGAAG TCGTTCAGAG TGTTGCAAAT GTTGAATTTT CTAAGGCAGT TATATTGGGA
AACCACGATG CCTGGTTCAC TAAACAGTTT TCTAAAAGGT GAAGTTTACA AGTTTGTTCC TGGAATCATT CTTTGTGCGT
GTTTGTGTAC TCTGTGAAAA AAGGTTCATG TTGTTTGATT ATTCCATAGG GCTTAATGAA AATTTCATTT GAGAAATAGA
TAGAAAACTA GGAAAATAAA CTTTGAAATT ATGTCTACAG TACATCTTTT TTGTCCCACC ACCCTGATAA CAACATGCAA
ACACACACAA ATAATCCCAT CCGTCCAATC TTTTTGACAG TAGAAGCTTT GTACTATGTC AAAAGCTTAA TTTGTTTGAG
TTTGTTTTGT ACGCAGTAGG TGGTAGTTGC AAATGCTGAT TTCTATTCAA ATTGTAAACT AACACTTTGA TTCAAATATT
AGCCAGGAGA AGGATAAAGT TCAGCTTCAG CTAGAATGGT AAGCTTATCT ATAAGTATTT GATTTATTCT GAGAAAATTT
TGCTCTGATT TATTAATTTG ACTTATGCAT TTCAAAATCT TATTAATTTA CTTTTGACAA AAGCATATTT GTTATTTCTG
TTTATGTGCT TATATAATGC TATAGGTGAA TTAACTTGTT CACAGGTTTA ACAAAAGAAA ATGGGCTATT TCATTTTCCA
TTATTAAATG TTTAAAATGA GATTTTAAAA TATCTATGAT GAATTTTTTG TTGTTCCGGA AACGTGTCAA TTCTAGAGAA
GTTACCAATT ACTGAAAGCA CAGTTAACTA CTTTAGAGTT CTTGTTGACA CCTTTCCCAG ATTAATTTTA TCCCCATTCT
CGATAATTGT AAATTCCATT GAGTTTACTT ATTATGCTTT TATTATTTTA TGGAGATCCT TAGAAAATTT ACTGATAAAT
GAATCTATCA ATATAAATTC AGCCTTGGTG AGGAGCATGT GGCTTATCGA CGATCAGACT TCCCTCTAAT AAAAGTAAGC
GTTGTTGGTG GACGGCCATT TTCTTGTGGG GGTAAACCAT TGTCGCAGAA AAAGCTTCTT TCTGCAAGGT GTGTATTGTA
ATGGAAGTAA TCAGACAATT CGATCCTCAA AAGGCTCAAA ATGTATTTAG TATTTTCAGC TTTCCACCTT AGTTTCTAAT
GCCTACAAAA AAGAGTTAAG TTCACCAATC ACCATTTTTC TCCCATCACA TTATCACCTT GAAAGAATGC CGTACGATCT
TTCCAACAGT TACTCATATT ATTAACTTTT GATGCTATGT ATTTATCTTG CCCAATCTTG CCTCGCCTCG CCTCATTTAA
TTATCCATTA TTGTGACAAC AGATAATCCA CAATAGAAGT AGAGTTAGGT GGTCTTTTAT GATTTGTTTA GGAGATCATA
TATGTTGTGT TTTTTTACTA TTACTATAAT TCCATGGTAG CTCGAAATCA ATTTATCAGT TGAGCTTTGT CATAGATATG
GAATTAAAGA CATGGATGAG AGTGCTAAGA GAATCCAGAA AGCTGCTCGT GGTACACCGG ATGATCATTT TCTTATATTA
CTTGCACATA ACGGGCCCTC AGGTGACACA TGGCATTTCA ATTTTGTTAT CAGCTCTGTT GGTACTGCTT GTCTATCACA
CCTAATACAC ATCCTGATGT TTAAATTTTA AATTTGTATA GGCCTTGGTT CTGATTTGAA TGATATATGT GGAAAGGACT
GGGAATTTGG GGGTAATGGT GATTATGGTG ATCCAGGTAA TACGTATACT TCATGACTTA AATTTTTATT AAAATATTAT
CTTTTTGTGG TTTTGGCACT CAGCAATAAT GACAACTGTC AAGGCCGTAT TCCAGCCTCC ACCTCCTCCC GCTTATTATT
ATTTGAATAA CAATCTTTCA TTTCATTTCA GATGTTTCTG TATGTTATTC TGAATAATCA TTTCCATTTT AGTTGATTTG
TACCTTAAGG TGCCACTGAA GAATGATGGA GATAATGCAA ACATAACAAA ACTGAGATAA TACAGTTTTT ACCTAGTTTA
TTATGTTTAT ATGACAGATC TAGCACACGC CATATCCTTG CTAAAAGAGA ATGATCAAGT ATCAATTCCC TTGGTTGTAT
TTGGTCACAT GCACAAAGAG CTGGCATATG GCAATGGCTT TAGGAAAATG ATTGTGGTTG GCCCTGATAA CACCATATAC
TTAAATGGGG CAATTGTTCC TAGGGTCAAA AGGTTGAATG ATGAAGACAA GAGAAGCTTA GACGAGGAAA GTGCTCTTTC
CTCATCAGAG GCAAAAGGTA CCAGAAGAGC CTTTACTTTA GTTGAGATTT CAGAAGGGAG AGTTGCTAAG ATTGCAGAAA
GTTGGGTCTC AGTCGTTGAA GATAGGACCA CATTAGAAGA AGAGCACATA CTATATGAGG TCAGCTAGGA TCCTCATCCT
CCACATTTAG GCTCCTGCCT CTGTCACACC CATTTTAATG CGTAGATGAA TAAAGCCAAG GGTGAAATAT ACATCGAAGC
TGATTCCTTA TCCCGATGAA TAGTATTTAA TTTCATTGTT AATAACTACT GTATAGACTA CACAAATGGC ATATGCTCTT
ATACTCATTC CTTATCTAGC TGGTGTGATT TATTGCTTGT ACCGCACCTC TATTTCATGT GGCAAGTCAA ATGTGAAGGG
CTCGTGTCAA ATTATTTTCT TCCTAGCATA GAGGACTGCA CCCCTGTTTG TTTTTGTTGT CCTTGCGCAT TTGGATTCAT
GTTGAATGAT ATGGGTGGGT CTATTGGATT ACACAGGCTG TTCCATTTGC CGTCATGGTG ACTAATATTT TTAACCTGGC
ACTGTCTGCT TGTGGTGCCA TTGTATTGTC CAAATTTTAC TCCATTTTGC AAGCACTATA CACGGATTCT GCAGCTGATA
GGTTTGGAGT ACATCATTTT CATGTTTGTC TTTTTTTTTT TTTTCTGGAC CCAATGAAGA TTGCAGTGCT TTGGCAGATG
GCTGTGATCC CATTTGGTCA TGAAATGACT CCCCTGACTT TTAGCTCTAA AGTAAAGGTT AAAGAGGCTG TGATACTGAA
GGTTGACCAA ACTTTTAATG ATTTGATGCT GGCTTGTTTC CTCTTTTCAT TAATTTTTTC TCTTTTGATG AGTTAAGAAA
AAGTTTCATT CACATGAAAG AAATGACCCA TTTCCTAGAC TTACTCGATT AACCTTGCTA TTGGTGAATG ACATATTCCA
C

>Vigan.01G418300.01
GTAAAATAAG AGTCCTCTTT AGAGAAGGTT GTTCATACCC ATGTTGAGCG CGTGCATTCA CGCGTCTACC GTATTTCCCT
CCTTTATTAG TCACTGTGTG AGCCCGAAGA AGCTCGACCT CTCTTGCTCT TCAATGGCCG CGTCGTCCTC TATTCGAATC
GTCGTCGTCG GTGATGTGCA TGATTACTGG AACTTTGAAC AAGATTCCAA AGCGCTTGAG TTCTTGCAGC CAGATTTGGT
GCTGTTTACA GGTGATTTTG GTGATGAAAA TGTTGAAGTC GTTCAGAGTG TTGCAAATGT TGAATTTTCT AAGGCAGTTA
TATTGGGAAA CCACGATGCC TGGTTCACTA AACAGTTTTC TAAAAGCCAG GAGAAGGATA AAGTTCAGCT TCAGCTAGAA
TGCCTTGGTG AGGAGCATGT GGCTTATCGA CGATCAGACT TCCCTCTAAT AAAAGTAAGC GTTGTTGGTG GACGGCCATT
TTCTTGTGGG GGTAAACCAT TGTCGCAGAA AAAGCTTCTT TCTGCAAGAT ATGGAATTAA AGACATGGAT GAGAGTGCTA
AGAGAATCCA GAAAGCTGCT CGTGGTACAC CGGATGATCA TTTTCTTATA TTACTTGCAC ATAACGGGCC CTCAGGCCTT
GGTTCTGATT TGAATGATAT ATGTGGAAAG GACTGGGAAT TTGGGGGTAA TGGTGATTAT GGTGATCCAG ATCTAGCACA
CGCCATATCC TTGCTAAAAG AGAATGATCA AGTATCAATT CCCTTGGTTG TATTTGGTCA CATGCACAAA GAGCTGGCAT
ATGGCAATGG CTTTAGGAAA ATGATTGTGG TTGGCCCTGA TAACACCATA TACTTAAATG GGGCAATTGT TCCTAGGGTC
AAAAGGTTGA ATGATGAAGA CAAGAGAAGC TTAGACGAGG AAAGTGCTCT TTCCTCATCA GAGGCAAAAG GTACCAGAAG
AGCCTTTACT TTAGTTGAGA TTTCAGAAGG GAGAGTTGCT AAGATTGCAG AAAGTTGGGT CTCAGTCGTT GAAGATAGGA
CCACATTAGA AGAAGAGCAC ATACTATATG AGGTCAGCTA GGATCCTCAT CCTCCACATT TAGGCTCCTG CCTCTGTCAC
ACCCATTTTA ATGCGTAGAT GAATAAAGCC AAGGGTGAAA TATACATCGA AGCTGATTCC TTATCCCGAT GAATAGTATT
TAATTTCATT GTTAATAACT ACTGTATAGA CTACACAAAT GGCATATGCT CTTATACTCA TTCCTTATCT AGCTGGTGTG
ATTTATTGCT TGTACCGCAC CTCTATTTCA TGTGGCAAGT CAAATGTGAA GGGCTCGTGT CAAATTATTT TCTTCCTAGC
ATAGAGGACT GCACCCCTGT TTGTTTTTGT TGTCCTTGCG CATTTGGATT CATGTTGAAT GATATGGGTG GGTCTATTGG
ATTACACAGG CTGTTCCATT TGCCGTCATG GTGACTAATA TTTTTAACCT GGCACTGTCT GCTTGTGGTG CCATTGTATT
GTCCAAATTT TACTCCATTT TGCAAGCACT ATACACGGAT TCTGCAGCTG ATAGGTTTGG AGTACATCAT TTTCATGTTT
GTCTTTTTTT TTTTTTTCTG GACCCAATGA AGATTGCAGT GCTTTGGCAG ATGGCTGTGA TCCCATTTGG TCATGAAATG
ACTCCCCTGA CTTTTAGCTC TAAAGTAAAG GTTAAAGAGG CTGTGATACT GAAGGTTGAC CAAACTTTTA ATGATTTGAT
GCTGGCTTGT TTCCTCTTTT CATTAATTTT TTCTCTTTTG ATGAGTTAAG AAAAAGTTTC ATTCACATGA AAGAAATGAC
CCATTTCCTA GACTTACTCG ATTAACCTTG CTATTGGTGA ATGACATATT CCAC

>Vigan.01G418300.01
ATGTTGAGCG CGTGCATTCA CGCGTCTACC GTATTTCCCT CCTTTATTAG TCACTGTGTG AGCCCGAAGA AGCTCGACCT
CTCTTGCTCT TCAATGGCCG CGTCGTCCTC TATTCGAATC GTCGTCGTCG GTGATGTGCA TGATTACTGG AACTTTGAAC
AAGATTCCAA AGCGCTTGAG TTCTTGCAGC CAGATTTGGT GCTGTTTACA GGTGATTTTG GTGATGAAAA TGTTGAAGTC
GTTCAGAGTG TTGCAAATGT TGAATTTTCT AAGGCAGTTA TATTGGGAAA CCACGATGCC TGGTTCACTA AACAGTTTTC
TAAAAGCCAG GAGAAGGATA AAGTTCAGCT TCAGCTAGAA TGCCTTGGTG AGGAGCATGT GGCTTATCGA CGATCAGACT
TCCCTCTAAT AAAAGTAAGC GTTGTTGGTG GACGGCCATT TTCTTGTGGG GGTAAACCAT TGTCGCAGAA AAAGCTTCTT
TCTGCAAGAT ATGGAATTAA AGACATGGAT GAGAGTGCTA AGAGAATCCA GAAAGCTGCT CGTGGTACAC CGGATGATCA
TTTTCTTATA TTACTTGCAC ATAACGGGCC CTCAGGCCTT GGTTCTGATT TGAATGATAT ATGTGGAAAG GACTGGGAAT
TTGGGGGTAA TGGTGATTAT GGTGATCCAG ATCTAGCACA CGCCATATCC TTGCTAAAAG AGAATGATCA AGTATCAATT
CCCTTGGTTG TATTTGGTCA CATGCACAAA GAGCTGGCAT ATGGCAATGG CTTTAGGAAA ATGATTGTGG TTGGCCCTGA
TAACACCATA TACTTAAATG GGGCAATTGT TCCTAGGGTC AAAAGGTTGA ATGATGAAGA CAAGAGAAGC TTAGACGAGG
AAAGTGCTCT TTCCTCATCA GAGGCAAAAG GTACCAGAAG AGCCTTTACT TTAGTTGAGA TTTCAGAAGG GAGAGTTGCT
AAGATTGCAG AAAGTTGGGT CTCAGTCGTT GAAGATAGGA CCACATTAGA AGAAGAGCAC ATACTATATG AGGTCAGCTA
G

>Vigan.01G418300.01
MLSACIHAST VFPSFISHCV SPKKLDLSCS SMAASSSIRI VVVGDVHDYW NFEQDSKALE FLQPDLVLFT GDFGDENVEV
VQSVANVEFS KAVILGNHDA WFTKQFSKSQ EKDKVQLQLE CLGEEHVAYR RSDFPLIKVS VVGGRPFSCG GKPLSQKKLL
SARYGIKDMD ESAKRIQKAA RGTPDDHFLI LLAHNGPSGL GSDLNDICGK DWEFGGNGDY GDPDLAHAIS LLKENDQVSI
PLVVFGHMHK ELAYGNGFRK MIVVGPDNTI YLNGAIVPRV KRLNDEDKRS LDEESALSSS EAKGTRRAFT LVEISEGRVA
KIAESWVSVV EDRTTLEEEH ILYEVS*