GBrowse Details

Vigan.01G411900.01

Basic Information:
Name: Vigan.01G411900.01
Multiple alignment
Variant Information
Position: Chr01:54925677..54928557 (- strand)
Length: 2881
Functional Information:
Description: Similar to calcineurin subunit B-like. [XP_004507759.1, Cicer arietinum]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: EF-hand domain (IPR002048)
EF-hand domain pair (IPR011992)
EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.26,0.21,15.75,10.62,18.65,11.88,20 .04,6.26
Automatic updates:
Name: NM_001248991 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calcium-binding EF-hand family protein (LOC100305475), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:54925677..54925901 (- strand)
Length: 225
Type: three_prime_UTR
Position: Chr01:54925902..54925952 (- strand)
Length: 51
Type: CDS
Position: Chr01:54926595..54926669 (- strand)
Length: 75
Type: CDS
Position: Chr01:54927734..54927843 (- strand)
Length: 110
Type: CDS
Position: Chr01:54927943..54928039 (- strand)
Length: 97
Type: CDS
Position: Chr01:54928108..54928232 (- strand)
Length: 125
Type: CDS
Position: Chr01:54928324..54928393 (- strand)
Length: 70
Type: CDS
Position: Chr01:54928394..54928557 (- strand)
Length: 164
Type: five_prime_UTR

>Vigan.01G411900.01 class=Sequence position=Chr01:54925677..54928557 (- strand)
AAAATGTTGA ACGTGGAGGT GTTAGGCTTC CACATGGCGA AAATAGACCT TTTCAATTCA TGGATGCGTA GCCGAAGAAA
GTAGTTGGGG GCAGTTGGGA TGCAGTGTTC ATTTCTTCTC TCTTTCTCTC TCACACACAG ACACACACTT TCTCGCCAGA
AGCCATGGGC AACACATCTT CCATGCTCAC CCAATACGAC ATCGAAGAGG TTCAGCAACA CTGCCAACAC GCTTGTAACT
AACTAACTAC CTACCAATCC TTCAATTTTA ATTTCATTTT CATTTTCATT TACTCGTCTT TGATTTTTCG CGTGTGCGTG
TGTAGTTACG CAGCAGGAGA TTGTTTCTCT GTACCAACGC TTCTGTCAAC TCGATCGCAA CAACTGCGGT TTCATCTCTT
CTGATGAATT CCTCTCCATT CCCGAATTCG CCGTCAATCC TCTCTCTCAG GTCTCTCTTT CTCTCGATTC AATTTTCCAT
TCAATTCAAT TGAGGTGTTC ACATTGATAA CATTGCAGAG TTTGTTGAGG ATGCTGGACG GATTGAACTT CAAGGAATTC
GTGGCTTTCT TATCTGCCTT CAGTCCCCGC GCCACTCTAC ACCAAAAAAT TCTATGTAAG TTATTTTATC AAAATTATCA
ATTTATTTTC TCTTTGTTCA ATCGAAGACA GATAAATCAC ATCATTGTTT TAATTTTGCT TTTTCATTTT GCAGTCATTT
TCAAGTGGTA TGATACCGAT TGCAATGGAA AAGTGACCTT CCATGACATG CTCAGGGCTT TAAGGGATTT GTCAGGATCC
TTCATGTCTG AGCAACAGAG AGAGGTCACT TTATTCTTTT GCTGCCTTTT GCTGATGCTG TTCGGTTTTT CTTTTCTACT
CTCCATATAG CACACTGCAC TTTCTTGCTT GGTTTGTTTG ACAAAAACTT GGTTTTACCA GTAATTAGGA AGCTGCTTTC
ACTTTGAGTT GAATTTAGTT TTTATGCACT GACCTTAGAG TATAAAAAGT GCTTTACTAC CAATTGCAAA TTCTAATTGA
TATGACTTTT AAAATAGTAG TAGGGAGTGT TGATTGAGTT ATAAACTTTT CAGTGCCTGT TTTGCATTCT TATAAACACA
AAAGTCTTTT TCATGTACAA ATCAATAAAT TTATTATATA TGACCGTTTG TATATAAATA ACACAGCAAA GTGTCCCTAA
AGATGCTATT TGCTCTTTTA TTTTCCAATG TTAAAGATTG TGCAGGAAAT TAAAAAGAAA ACGTGATACT TCTGTAATTA
TTTGTATTAA TGTGTCGTGA AAACATTTCG CAAATCATAG AGGTATTGGC CTTTCACTTT CTATAGTTAT CTACCAAACC
AATGTTTGTG TTCGATTATT ATTCTGGTCC ACATGACATC AGAGGAAACA CATTACAGCT TACTTCTCAC CTTTGTTCCT
TTGAAATCAA GTTTTGGAAT TGGATGGTTC AAGCAATTGA ATTTAGAAGT ACCGATAACA ATATTCCTTG TATATAAAGT
ATGAGGCTTA GTATGAGCCA CATAAGCCGG AAACTAAGCA AAAGACAATA AGAGTTTCTT TGAAAGTTGT TATCTATTAC
AAGGCTCTCG ACTTGTAGCT CTAATTGCAC TTTTCATGCT TTTAAAATGA AAGGAGAAGA TTGTTTCCTA GCTTCCAAGT
TGTATCTGTG AATATGTTAC CAGGTGAAAA ACATCTTTAT CTTTTTTTTT ATGAGAAACA TAGAAGCACA ATCCTTCATC
AACCAAGTAT TTATATGAGG TGTATCATCC ATGTATGTTT TGTAATATCT CAGATTGCCA AATATATAAA TGGAGGATGT
GATCTGCTTA TAACAGCATC ATGTATTCTC TTTCCTTTGT ATATACAGGA AGTTCTGACA CAGGTCCTTG AGGAAGCTGG
CTATGCAAAG GATTCTTCAT TAGTCTTGTC TGACTTCGTG AAGGTACTGA AATTTGCTTG ACTTGCCTCT CTAGAAATCT
GAAGTTTAGT TTATACAATC TTTTTAATAG GCAGCAAGTA CACGCTAAGA GATAGTGAGT TGAGTCTTCT ATTATTTTTG
GTGTTTCTCC TTCATATCTA TTATGATCTT ACCATTAACT TCAAAGATAT TACCAAAATT TGATTTTAAC TGTGGTTAGG
GCCTTAACAT AGATGTGAAG AAGGAAATTA AGTAACAATG CAAAGATGAG TTGATAATGT CAAATGGGAG TTCTATTTTA
TTGATTTATC CTGTAAATTA GAAGGCACAG TTGCCCATAT GATGCATATA TATTATCTTG CAGTGGTAAA GGTCTCTTAC
ATCCAATATT TTAAACCAAA ATAATATTTT CACGTGGTTC ATAGGTCGCA ATTAGCATAA AACTCATGAT TGTTCCTTGG
TTGGTGGATA TTGCATTTTC ATACTCATGA CTGTCTAAGG GTCATACAAC AGAGTTCTAG CTCATGATTG TTTGAGGGTC
TTACACCCTT ATACCCATTC TTGTTTTACA CCGCGCATAC TTAATAAAAC TGCTCTTAGT TTGACATTTG TTACTGTGCT
ACCTTTCATA TGGAAATGCT TGACCATCAT CCCTTTTACT GACAGATTCT TGGCAATTCG GGTTTGAAGA TGGAAGTAGA
GATTCCGGTG GATTAGAGAG AGGATAGCAC TATTGCCTTG TATAATATAA AAAAAAAAAA AATTAGCTAT CATGAGTACT
CTATGAGTTT GATATGGGAG CTTATTGGTT TTGGTATTTT GATCTTTATT GTAATGGGTA ATAGATTATT TATTGAGTGT
TTAATTACTC TGAAGCAAAA TTATAGATGA TACAATTTTT AACAAATGCT CTCAGGAAGC AGAATTGAAT TTCTGCATGA
A

>Vigan.01G411900.01
AAAATGTTGA ACGTGGAGGT GTTAGGCTTC CACATGGCGA AAATAGACCT TTTCAATTCA TGGATGCGTA GCCGAAGAAA
GTAGTTGGGG GCAGTTGGGA TGCAGTGTTC ATTTCTTCTC TCTTTCTCTC TCACACACAG ACACACACTT TCTCGCCAGA
AGCCATGGGC AACACATCTT CCATGCTCAC CCAATACGAC ATCGAAGAGG TTCAGCAACA CTGCCAACAC GCTTTTACGC
AGCAGGAGAT TGTTTCTCTG TACCAACGCT TCTGTCAACT CGATCGCAAC AACTGCGGTT TCATCTCTTC TGATGAATTC
CTCTCCATTC CCGAATTCGC CGTCAATCCT CTCTCTCAGA GTTTGTTGAG GATGCTGGAC GGATTGAACT TCAAGGAATT
CGTGGCTTTC TTATCTGCCT TCAGTCCCCG CGCCACTCTA CACCAAAAAA TTCTATTCAT TTTCAAGTGG TATGATACCG
ATTGCAATGG AAAAGTGACC TTCCATGACA TGCTCAGGGC TTTAAGGGAT TTGTCAGGAT CCTTCATGTC TGAGCAACAG
AGAGAGGAAG TTCTGACACA GGTCCTTGAG GAAGCTGGCT ATGCAAAGGA TTCTTCATTA GTCTTGTCTG ACTTCGTGAA
GATTCTTGGC AATTCGGGTT TGAAGATGGA AGTAGAGATT CCGGTGGATT AGAGAGAGGA TAGCACTATT GCCTTGTATA
ATATAAAAAA AAAAAAAATT AGCTATCATG AGTACTCTAT GAGTTTGATA TGGGAGCTTA TTGGTTTTGG TATTTTGATC
TTTATTGTAA TGGGTAATAG ATTATTTATT GAGTGTTTAA TTACTCTGAA GCAAAATTAT AGATGATACA ATTTTTAACA
AATGCTCTCA GGAAGCAGAA TTGAATTTCT GCATGAA

>Vigan.01G411900.01
ATGGGCAACA CATCTTCCAT GCTCACCCAA TACGACATCG AAGAGGTTCA GCAACACTGC CAACACGCTT TTACGCAGCA
GGAGATTGTT TCTCTGTACC AACGCTTCTG TCAACTCGAT CGCAACAACT GCGGTTTCAT CTCTTCTGAT GAATTCCTCT
CCATTCCCGA ATTCGCCGTC AATCCTCTCT CTCAGAGTTT GTTGAGGATG CTGGACGGAT TGAACTTCAA GGAATTCGTG
GCTTTCTTAT CTGCCTTCAG TCCCCGCGCC ACTCTACACC AAAAAATTCT ATTCATTTTC AAGTGGTATG ATACCGATTG
CAATGGAAAA GTGACCTTCC ATGACATGCT CAGGGCTTTA AGGGATTTGT CAGGATCCTT CATGTCTGAG CAACAGAGAG
AGGAAGTTCT GACACAGGTC CTTGAGGAAG CTGGCTATGC AAAGGATTCT TCATTAGTCT TGTCTGACTT CGTGAAGATT
CTTGGCAATT CGGGTTTGAA GATGGAAGTA GAGATTCCGG TGGATTAG

>Vigan.01G411900.01
MGNTSSMLTQ YDIEEVQQHC QHAFTQQEIV SLYQRFCQLD RNNCGFISSD EFLSIPEFAV NPLSQSLLRM LDGLNFKEFV
AFLSAFSPRA TLHQKILFIF KWYDTDCNGK VTFHDMLRAL RDLSGSFMSE QQREEVLTQV LEEAGYAKDS SLVLSDFVKI
LGNSGLKMEV EIPVD*