GBrowse Details

Vigan.01G377500.01

Basic Information:
Name: Vigan.01G377500.01
Multiple alignment
Variant Information
Position: Chr01:51632256..51637289 (+ strand)
Length: 5034
Functional Information:
Description: Similar to Peroxisomal biogenesis factor. [G7JIW5, Medicago truncatula]
GO: Cellular Component: peroxisome (GO:0005777)
InterPro: Pex19 protein (IPR006708)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:184.29,79.26,15.38,28.13,23.49,12.82 ,17.86,11.85
Arabidopsis thaliana homolog: AT3G03490.1
Automatic updates:
Name: NM_001248481 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527390 (LOC100527390), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248481 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative peroxisome biogenesis protein 19 (LOC100527390), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:51632256..51632332 (+ strand)
Length: 77
Type: five_prime_UTR
Position: Chr01:51632333..51632372 (+ strand)
Length: 40
Type: CDS
Position: Chr01:51632445..51632493 (+ strand)
Length: 49
Type: CDS
Position: Chr01:51632595..51632871 (+ strand)
Length: 277
Type: CDS
Position: Chr01:51635274..51635590 (+ strand)
Length: 317
Type: CDS
Position: Chr01:51636231..51636276 (+ strand)
Length: 46
Type: CDS
Position: Chr01:51636277..51637289 (+ strand)
Length: 1013
Type: three_prime_UTR

>Vigan.01G377500.01 class=Sequence position=Chr01:51632256..51637289 (+ strand)
GGATGAGAAA GAAGACTGCA TAGTTAGTTT ATTCATTCCA TTAGCCATAG CAGCAGTGTT GTGTGGCGGT GACAACCATG
GCCGACTCCT CTCAAGACCT CGACCAACTC CTCGATAGTA CGTTCTTCCT CACGAACTCT CACTTTCTCT TATGTTAAAT
TATTTAACTG TTTCATTCGA TTATTTCAGG TGCTTTGGAT GATTTTCAGT CCTTCAACCT TAATCCTTCT CTTCCAAGGT
TATCGTTTCC CCCCCTTTGT TCGACTCTGC AATATTTTAA TTTATTTTTC TTTTACTGAA TCTTTGAGTG TATGTGTTAA
TTTAATTGTG TGTTGGAAGT GGGGGAGCAA TTGCGAGCAA AAACGAGAGT CCTTCGTTGC CGTCGGGGGT TCAGGGATTG
GGCATGGGTT TACCTGATTT GAGAACGAAG AAAAAGGGGA AGCAGAAGGC TTCGAAGGAC AGCCACGTGG CGGAGGCGCT
GAACAAGCTG AGGGAGCAGA CCAGAGAGGC TGTGAAGGGC CTGGAGTCTA TGAACCCTCC TGCTGCTGAT GATTTGGGGA
AGGATGCATT GATGGAAGAT TGGGTCAAAC AGTTTGAGCA GCTTGCTGGC TCTCAGGTAT TACTTTTTTT CATTTTCTTC
CTTTGCACCA ATTTTTACTT GATTTACTAA TTCAGTATTT TTCTCTTGTC AACGCGCTTT AAGTTTGTCG TGTTATCTAG
TTGTGAGGTG AAAATCGGTA ATGGATTTTA GGGGCAGTTA TTTGTGCTTT GTTTTTTGCA CCTTCATGTA GTCTAACAGT
TTGGATATGT GAGAGGGGGC GGTGTGGTGA TATAGGGTTT TAAATTGCCG TGTTGTGGTT GTGGAAACTC CTAAAACCTT
GATGTTGCAG CCAAAATTGT GGCTACATAC CGGTTATTCA AACCTATCCG CACCCCATTG AGATGGAATT TGAGTAATCA
TCAAAGTTTT TTTTTCTCTT GCTTTGAGTG TAAGGAACCT AGGTCTTTGG TTTGGTCTAT GTGTATAGAA AAACACCAGC
CTTCTGTTCC AGGAGACTGA GAATTCCCTT GAAATCTGAT GAAAGTTGGT TTGGCAACTG TCATTTTTTT CTCTTAGCAA
TTAATTTCTC TGCTGCTGCT TTGGACGATC ATGAACTGTG GACTAGGTTG TTATGGTGTT TCCTGTGTAT GATATTCCTA
TCATTTCTCA CAAAAGTTAA TATAATATAA TACACACACA CACACACAAA AGTTAATATA ATATATCAAA GAGACAGATT
GGAGCTAAGG GACCAATATT TATTTGCACT AACCTGTCAA TAGTTGTGTA TCAGAGGCAA ATCAGTAATG TCGTAGGTTT
TTATCTTTTT TTTTTAAAAA AAAATGTGCT TTTATACTGC ACATATGCAT ATTGGGGCAT CATATAGACA TCTCAATGTT
TTGGTAGTCA ACTGATACAT AAGAGGAGGA AAAGAGATAA AACGAATGAA AAAAATACGG TAATTCAAAT GGTATGGTGA
TATTACTCAA TGTGACCAAA AAGCTGACTG CTAGTTACAT GAATGGGTGT AGTTTGAGGG TCACCTCCCC TCTCATAACT
GAGCCAATTT CTAACTTTAT AGCTAAATTC CCTTTCGCTC TTATTTATAG TCAATTCTAT TGACATCTGA TCCCCTCCTT
GCCCTCTGCA CTCATGTTCT TTACTACTGG TTGCCTATCA GATTAGCACT ACATTCCCAA TTACATTTAA TCATTTACCC
CTGAAAGTCA AATGTTCATC AGTCTTGAGC TGCTACGACT TTTTTCTTGC ATTTGTATTT TGTGGATTAT AGACTCTTTC
CAATAATCCC TTTGGAAGAT TTTTTATTGA AACTCCAATA AAAAAGAAAT CAATTTGGAG GTTCCACTTT TATTAGTTAT
TAGATGTCCC TCCTGCTTCT TTAATAAGTT TTCATGCATT TCCTAAATAT TCACTTGCAA TATTGATATA CTTTGGGAAG
GGGTGGGGAG GGGGACTCAA CTTTAACAGT AGGTGGTCTA CCTGTGAGGC ACTTTTGAAC TGGTACTTGC TAGAATCTAC
CTTATGAAGG TGATTGATTG CTCGTATATA TCCTTTGTTC CTTTGTGCTC TTTCTTTATG ATTTAAATTG AAAATGGGAT
TTACTTTTTT TTATGCAATG ACAAAATCCA ACTGCTCGTA CATTAGAAAT CTAGGTTGGT ACCATTGTGA TGACATACCA
TGTTTGGTAT TTTCTGAGTC CAAATGTCAT GAAATTACGA ATTCAGTTCA TCCTAGCCTA GATGTTGGCC CTTATTTTAT
GCGTATCAAG TTTTTCCTTT ATGGAAATGT GAATGCAGTG ATCTTACTTT TAATGCAACA ACTCACGTTC ATATATTACC
GTTGGAGATC CCACATCAAT AAAATATGTG AGCAAATTTA TATATAAATA GGTGTAAATC TCATTATATG GGTTTTATAA
GATCAAATTA GATTTGAAAT TCACTTTCTA AAAACTAGAG TCAAAGGTTG TTTGTCATGA TGACAGCTTA TTTAATTTGG
TTTTTGTATT CAACTGATAA CTTCTGTTTT TCTTAAAGAA GTTCAAACTA AATGAAGAAT TAAAGTTGGA ATCTATTAAT
CAAGAGAATG AAAAGTTAGT GAGATTTGAA CTGTACGAAC TTTTATGTGT CCTTATGCCA AGCTCCGCTC GGAAAAGAGA
CTGGTGACAG ATGATAGGCC AAGCAAAGCA GAAATCGAGG CCTGGAATAC TTCTTTTCAT ATATAAACAT AGCCTCTATT
ATATCTTCTG TTAAATATGT GAAGCTAACC AAACTAGACC AAAGAATTTG CCATGTTTTT ATTATAAATT TTTACTGAGG
AAGCAAGTAA TTAAGGGCAT CAAAGATATT GTAACGACTA ATGGTGCTAT TTCTTAAGTT TTCATCATGG GAATACCGTA
TCTTGACTTC CTTTCCTGGA TTTAATGCTA ATAATGTTAT TATTATTATT TTGTGTAGGA TATGGAATCT ATTGTGGAGA
CCATGATGCA GCAACTTCTG TCCAAAGAGA TTCTTCACGA ACCAATGAAA GAAATAGCAG AAAAATATCC TAAGTGGCTG
GAAGACCACA AATCTAGCTT AAGCAAAGAA GAATATGACC GTTACGCACA CCAATATGAA TTGATACGAA ACCTGAATGA
AGTTTACGAA AATGATGCCG TAAACTTTAA CAAGATTGTC GAGCTCATGC AGAAAATGCA AGAATGTGGA CAACCACCAA
ATGAAATCGT CCAGGAGCTT GCTCCGGATT TCGATTTAGC GAGTCTTGGC CAGATGTAAG TTCCCTTGGT TATGTGTTGG
TGGTGTTTAT CACACTATGT ACTTGTAGTA TTAATCATTA TTTACTTCTT TTTTTTAAAT AAGACCCTCG TGTGAAAATA
AGCATCGATT ATTTTTAGCT TCCTAAACTC TGAACTAGAT GAATAGTTTG TCTTGCAATT TTACATAAGA GGTGTATGTT
GATTTTATAG CTGTTGTTTA TGGGTTGAAG CTCAGTGTAT CAGTTCTCAC TTATGTTGAT AATCAGTACT GGATAATAAA
ATAAATGGCT TCGTACAATC TGTAAAATCT GTATCTTTTA TTTTAGTGCT TAAACAGTGA TCTAACTTGC GGTGAATTAC
TAGTGCTGAA ATGGTTATTG AATCATCATA TAAAAGCTAC GATTTTATGT AGAATTTGAC TAGATCCTAG TTTAGGAATG
AATCACCCTT ATCTAAGCTT TGATCCTCCC CAGGATACCT ATTCCTCTCC CCTGATAGGA TGCTTTCCAA TATATATTTT
TTAAAAACAA AACCGGTTAT CTGGCAGCAT CCATTGTCAT TCAGAAACTT ATCACTACCA TTTTTTTTAC ATCTTGCAGT
TTTCAAACTA CATTCTTGTA TGTGCATCAA CTGATGTGAA CTTTTTCTCC TGCAGATCTC CAGAGATGCT TGAAGGTCAG
CAAAATTGTT GCATAATGTG AAGCTATTTC TTGCCATTTA TCAAGTCTCT TTGACGGTTT ACATTACAGA TTTTTAGGAA
TATTTGATTT TCGCGTGTCA GAATAAGATA GTTTTATGTG CTACAATGTT TTACCCTACT CACGACAAGG TTACGAGGAA
ACCACAATTA AAGTCTCCTT TGAGGGTTCT ATATATCAAT ATTTTCTGCT GGAAATTATA TTACGAGTTG TTAGTTGCAA
ACAAAATTTG CTTTCTGATT TGTTGAGATT CATTTGCCTT CATAATGAGT AATGACTAGC TATTTGCAAG GCTGAAAAAC
ACCAGTAGAT TTATAGGTAA GATACACGGA TTATTCTTTC TGTAAAGGAC TTACTAGTAA ATGATGCCAT AACTAGCCAT
TCTGTCTATA TATTATCAAA TATTCAAACA CCAAAATCCT TTGTAGGAGT TTTGTGTAAA GTCCCCCTCC CCCTAACCTT
GCAGTAAAAC CAGCTGATAA ACACGGAAAT GAAATTTTAT TCATAATAAA AGAATCAAGA TATGGCATTT GAAAAGTGAT
AGAAGAGTAT ACAGTATACA AATCAGGCCC TCAACTGTAT TTGTCAGTTG CGAAACAAAG GCCCCTCTTT TAAAGATTGA
ATGGATGAAT TTCCTATGGT TAAACACAAA ATGAAAAAAT GACAGCAATG ATATTGGGTG GACTAAAGCT GTGCAATATG
TTGTTTTGGG GGCTCTTTGC ATTTAGCTTG TTCAGCTGTT AGCTAAGCAT CAGAGGGTGC CATCCAGTGT TTCCCATTAA
CAAAACTCTT GACCAGGAAT GGGTGGGCAG ATTCAAAATC TAGCTCTTTG GCTAATGGGA CTCCACTTAT AGCCGCAGCA
CCTGGTCCCC AGCATTTGTA CACTCCAAAG AACACAGTCC TAAACACCCC AAATCAAGAT AAATATTTTC AATTTAAATT
GGAAGAAACA TACCATAGTA AGATGATTAT ATAGTATGAA ATGATAGTGG ATAACCCAAA GAAAATTGTA TGAT

>Vigan.01G377500.01
GGATGAGAAA GAAGACTGCA TAGTTAGTTT ATTCATTCCA TTAGCCATAG CAGCAGTGTT GTGTGGCGGT GACAACCATG
GCCGACTCCT CTCAAGACCT CGACCAACTC CTCGATAGTG CTTTGGATGA TTTTCAGTCC TTCAACCTTA ATCCTTCTCT
TCCAAGTGGG GGAGCAATTG CGAGCAAAAA CGAGAGTCCT TCGTTGCCGT CGGGGGTTCA GGGATTGGGC ATGGGTTTAC
CTGATTTGAG AACGAAGAAA AAGGGGAAGC AGAAGGCTTC GAAGGACAGC CACGTGGCGG AGGCGCTGAA CAAGCTGAGG
GAGCAGACCA GAGAGGCTGT GAAGGGCCTG GAGTCTATGA ACCCTCCTGC TGCTGATGAT TTGGGGAAGG ATGCATTGAT
GGAAGATTGG GTCAAACAGT TTGAGCAGCT TGCTGGCTCT CAGGATATGG AATCTATTGT GGAGACCATG ATGCAGCAAC
TTCTGTCCAA AGAGATTCTT CACGAACCAA TGAAAGAAAT AGCAGAAAAA TATCCTAAGT GGCTGGAAGA CCACAAATCT
AGCTTAAGCA AAGAAGAATA TGACCGTTAC GCACACCAAT ATGAATTGAT ACGAAACCTG AATGAAGTTT ACGAAAATGA
TGCCGTAAAC TTTAACAAGA TTGTCGAGCT CATGCAGAAA ATGCAAGAAT GTGGACAACC ACCAAATGAA ATCGTCCAGG
AGCTTGCTCC GGATTTCGAT TTAGCGAGTC TTGGCCAGAT ATCTCCAGAG ATGCTTGAAG GTCAGCAAAA TTGTTGCATA
ATGTGAAGCT ATTTCTTGCC ATTTATCAAG TCTCTTTGAC GGTTTACATT ACAGATTTTT AGGAATATTT GATTTTCGCG
TGTCAGAATA AGATAGTTTT ATGTGCTACA ATGTTTTACC CTACTCACGA CAAGGTTACG AGGAAACCAC AATTAAAGTC
TCCTTTGAGG GTTCTATATA TCAATATTTT CTGCTGGAAA TTATATTACG AGTTGTTAGT TGCAAACAAA ATTTGCTTTC
TGATTTGTTG AGATTCATTT GCCTTCATAA TGAGTAATGA CTAGCTATTT GCAAGGCTGA AAAACACCAG TAGATTTATA
GGTAAGATAC ACGGATTATT CTTTCTGTAA AGGACTTACT AGTAAATGAT GCCATAACTA GCCATTCTGT CTATATATTA
TCAAATATTC AAACACCAAA ATCCTTTGTA GGAGTTTTGT GTAAAGTCCC CCTCCCCCTA ACCTTGCAGT AAAACCAGCT
GATAAACACG GAAATGAAAT TTTATTCATA ATAAAAGAAT CAAGATATGG CATTTGAAAA GTGATAGAAG AGTATACAGT
ATACAAATCA GGCCCTCAAC TGTATTTGTC AGTTGCGAAA CAAAGGCCCC TCTTTTAAAG ATTGAATGGA TGAATTTCCT
ATGGTTAAAC ACAAAATGAA AAAATGACAG CAATGATATT GGGTGGACTA AAGCTGTGCA ATATGTTGTT TTGGGGGCTC
TTTGCATTTA GCTTGTTCAG CTGTTAGCTA AGCATCAGAG GGTGCCATCC AGTGTTTCCC ATTAACAAAA CTCTTGACCA
GGAATGGGTG GGCAGATTCA AAATCTAGCT CTTTGGCTAA TGGGACTCCA CTTATAGCCG CAGCACCTGG TCCCCAGCAT
TTGTACACTC CAAAGAACAC AGTCCTAAAC ACCCCAAATC AAGATAAATA TTTTCAATTT AAATTGGAAG AAACATACCA
TAGTAAGATG ATTATATAGT ATGAAATGAT AGTGGATAAC CCAAAGAAAA TTGTATGAT

>Vigan.01G377500.01
ATGGCCGACT CCTCTCAAGA CCTCGACCAA CTCCTCGATA GTGCTTTGGA TGATTTTCAG TCCTTCAACC TTAATCCTTC
TCTTCCAAGT GGGGGAGCAA TTGCGAGCAA AAACGAGAGT CCTTCGTTGC CGTCGGGGGT TCAGGGATTG GGCATGGGTT
TACCTGATTT GAGAACGAAG AAAAAGGGGA AGCAGAAGGC TTCGAAGGAC AGCCACGTGG CGGAGGCGCT GAACAAGCTG
AGGGAGCAGA CCAGAGAGGC TGTGAAGGGC CTGGAGTCTA TGAACCCTCC TGCTGCTGAT GATTTGGGGA AGGATGCATT
GATGGAAGAT TGGGTCAAAC AGTTTGAGCA GCTTGCTGGC TCTCAGGATA TGGAATCTAT TGTGGAGACC ATGATGCAGC
AACTTCTGTC CAAAGAGATT CTTCACGAAC CAATGAAAGA AATAGCAGAA AAATATCCTA AGTGGCTGGA AGACCACAAA
TCTAGCTTAA GCAAAGAAGA ATATGACCGT TACGCACACC AATATGAATT GATACGAAAC CTGAATGAAG TTTACGAAAA
TGATGCCGTA AACTTTAACA AGATTGTCGA GCTCATGCAG AAAATGCAAG AATGTGGACA ACCACCAAAT GAAATCGTCC
AGGAGCTTGC TCCGGATTTC GATTTAGCGA GTCTTGGCCA GATATCTCCA GAGATGCTTG AAGGTCAGCA AAATTGTTGC
ATAATGTGA

>Vigan.01G377500.01
MADSSQDLDQ LLDSALDDFQ SFNLNPSLPS GGAIASKNES PSLPSGVQGL GMGLPDLRTK KKGKQKASKD SHVAEALNKL
REQTREAVKG LESMNPPAAD DLGKDALMED WVKQFEQLAG SQDMESIVET MMQQLLSKEI LHEPMKEIAE KYPKWLEDHK
SSLSKEEYDR YAHQYELIRN LNEVYENDAV NFNKIVELMQ KMQECGQPPN EIVQELAPDF DLASLGQISP EMLEGQQNCC
IM*