GBrowse Details

Vigan.01G374800.01

Basic Information:
Name: Vigan.01G374800.01
Multiple alignment
Variant Information
Position: Chr01:51349804..51355883 (+ strand)
Length: 6080
Functional Information:
Description: Similar to MYB transcription factor. [T2DNE9, Phaseolus vulgaris]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Myb domain, plants (IPR006447)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:511.53,386.45,59.16,56.80,32.99,145. 89,104.92,32.78
Arabidopsis thaliana homolog: AT5G47390.1
Automatic updates:
Name: KT031272 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_94 MYB/HD-like transcription factor (Glyma17g15330.1_like1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: KT031273 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_95 MYB/HD-like transcription factor (Glyma17g15330.1_like2) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001250591 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB93 (MYB93), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251693 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB180 (MYB180), mRNA.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:51349804..51350001 (+ strand)
Length: 198
Type: five_prime_UTR
Position: Chr01:51350002..51350290 (+ strand)
Length: 289
Type: CDS
Position: Chr01:51354172..51354380 (+ strand)
Length: 209
Type: CDS
Position: Chr01:51354820..51355323 (+ strand)
Length: 504
Type: CDS
Position: Chr01:51355324..51355883 (+ strand)
Length: 560
Type: three_prime_UTR

>Vigan.01G374800.01 class=Sequence position=Chr01:51349804..51355883 (+ strand)
TGCGAAAGCC GAGGGAGACC GTAACAAAAA ACATTACATA ACCCAAAACA AACACATCAC AATACCTATT CCCTCTTACC
ACACCTAAAT AACCTTAAAA CTCCCATTTC ATGTCTCGGA TCCCGTGATT CGGATCCCCC AAGACCCGCT CCCACAATCT
CGTACTTTCC TTTCGGCCGA TCCGGTTGGG AACGCGCCAT GACCCGACGT TGCTCCCATT GCAGCCACAA TGGGCACAAT
TCCAGGACCT GCCCCAATCG TGGAGTTAAG CTGTTCGGAG TCCGATTAAC CGACGGGTCG ATCCGGAAGA GTGCTAGTAT
GGGTAATCTC ACCCATTATG CTGGTTCCGG GTCCGGACCT CTCCATGCGG GGTCAAACAA TCCGGGTTCT CCTGGTGAAA
CCCCCGATCA CGCTACCGCG GCCGATGGTT ACGCCTCCGA GGACTTTGTT CCCGGTTCTT CTTCGAGCTC CCGTGAAAGA
AAGAAGGGTT GGATTTCTTA TCTAAAAAAA TATTAAGTTT TTTTTTACTG GACTTGAAGG TTACTCGTGG AATTGCATGC
TGGTTTTTGG AAATTGGTAG GGAATTGGAA TGTTTTTTTT TCGGTGGTGT TTACACTGGT TGATTGAGTT AGGTGAAGTG
AATTAAATTG GGTTAATTGT GTGGTGGATT GTTTTAGTTT GGATAAAACT ATTCTTGGTC AAAAAATATT TCTGTTTTTG
TCTGTTGTCA CTGTGGGAAT AACTAGACAA GAAAGTACTA GTTAACTTTA TGAAGGGTTC TTTTTTCCAT GATTGAATAG
TTTGAGTGTT TGTGTGAAGT ATGTATTTAT GCTTGGCTGG CTAGATTTTG AATCTGGAAA ATATTTAGAA ATGGATTGGG
TGTGTTTCAA TTCTGTAATT ACCATGTTCT TTGAGAAGAA CTGGCTTGTT TGGTTCACTG AAGGTTCTAA TTGGTGAGGA
GCTTATCTGT CTAAGTTTTT GCTAGTTGAC CTGTGAAAAA GACCAGGTTT TGAGCCAGAT TAGCCTAGAG ACAACTTATG
TGCCTATAGA CAAGTTCATT ATGCTTTCTA TTGGATTTCT TTTTGTTTGC TTTGAAAGTG TTCCGTAACT ATGGGGGTAC
TATGTGTATA TATTTCTCTA TTTCAGCTAC ATGGAAACTG CTGCTGTAAT TTCTGGACAT TTTTGTTTTT AATAAACAAG
GTAACCAACT AGTTCGAAGA GCTTTATGTA AGTTTAACAA GCATTGATGC AGGCTCTACA CTGACTGATG CTCATGCTAA
ATATATCAGA TGATAGGGTG ACAGAAGTGC ACTTGTAGGT CACAGGGCAT TTACACTTTT TGCTACTAAT TGCAAATAGG
ATATCTCCTG TTCATAAAAA AATGGTGTTT GAGAACACCA GTTTGATAGT ACAGTTCTAT TTGTTTCATG CACACTGTAA
ACATGATTGA TATATTGACC AAGTCAGGTT CCTAGTCCCC TCTTTGCCTC ATACCTACCC ACCCATAAAA TATTTTTGAA
CCTCTTGTTA GAAGAAGGTT GTGAGGGGGT TACCTTCTTG TTCTGGAGTC ATATTCCTCT TCTTAATTGA CTCCTTGATA
CTTCAAGGGA AACACCTGGT ATTGGTTTAG GTACTGTAGT TTCATTTTCC AGCTTATCCT TGAAGGTGAT TGAGTCATTA
TGTAACATCT AGGCTTCATG TTGGGGTTGT ACATTGAGTG TAGGGGGAGG AATAGGTCTC ATGATCTATC ATGGGCCGTT
TACAATCCCT TGGTTAGTTT GGAGCTTGTA TTCACAGTTA TTGTCGTACT ATGTATAATG CAGAATTACA ATAAAGAAAA
CTTATAAAAT AAAATATAAA CATCTCAATC TTGGATTCCA AAGGTATATT ACAATTATTA ATCATCAATC CTTATAATGT
TGTAATTAAA AGTAAAAATA CTAATGAATG CTCCACATAG TAGGACTTCA ACAAAAGCAT GACACTCACT GCTTTCCTGC
AAGCCCTGTT TAATCTAAAG CATTTTAATT TAAACTAATA AAACGAAGGT TTAGTTGAGC GTCCTAGGGA CAGAATAACA
TCTTATATTT TCTGCATAAA CTGTTATAAC ATTCTCATAG CTTTATAATC TTTCTTAGCT TTTATTACTT TAGCTTTTCT
TTTCTGTCCT ACTGTCAAAC TTGAGCTTAT AATCTCGAGG ATTGTCTTCC TTGCTTTTTC CATACATCCT TCCCTTGTCA
AAGAGAACCT AAAGGGAGTC TTTGATAGCC GAAGGATGAG ACCATCTTTT GACAACCGAA GGAGATGAAT ATTCTTTTCT
TGTAAAAGGG AACGTTCTGG CATAATATTC TTTCCCTTAA CATAAATTTT TACGTATATT TATGTTCCTT AGTTTGAGGA
GTGTCAACCA CTATTTGGAG ATTGAAGGAG TTATTATCCT TGTCTTGCCA AAGAGGGTGT ACAGACTTAT ACATGCTTTC
TTTTAAACAA TTATATCTTG GTCATTGTAT GAGGTAAACA TGCAATCCGT CTTTCAACTA GGAGGTAAAC ATATCATTCA
TGTATGGAAT AAAATATTGA TATTCATTCA TATAGAGTAT TAATAGGGGC ATTTCATAGT CACCCAAACC ATTCCAATCA
TGAAAAAAAA ACACATAATA TTAGTCAATT AATAATTATA AAAGCCCATA GAAAATCAGT AATAATGTAT TGATTTGTCT
AAACCCTAAT GGAACTCTAA ACACATTCAT TCATGAATTT TAAGAAACAT ATACTCGATT GAAAGAAATT ATTCATACAA
TATGGGAAGT GGGAAGCATA CAGTGGGCTG CACTTACCTG GGACAATTGA CAATTCTAAA AACAGGGTGT TTAGATTTTC
CATTCTTCTT TCCTCTATTC TTAACTTCTC TCTTCCTTCC TTTCTCAAAT ATTTGTGCTC TATGAGAATA TGGTATGACT
TAGGGTTCAT AAATCTTACT TTTCTTTAAA ATTCCATCTC TTTTTTACTT GACTTAAGCT CATTTATTTA ATTATAGTAA
TTTCGTCATA TTTATTAAAT ATATTATTAT TGTTATCATC ATCATCTAAT TAATAAACTA GGATGCTATG TTTCTTAGCG
TTTCCATATT ACATATTGCT CTAATGATTA GATCATAATG ATAACTTGTC ACCTTTATTT CCTCCTTTAA TGCTGTGTGA
GCATTTATAC ATTTTTTTTT TTGTTTTTTA TTTTATTTTC ACATTATGCT TAGCTATAGT CCTATCTTCA ATATATTTTC
TTTCACACTA TTGTGATTCT AACTTCCCAC TTGCTAAAGA TCCCTGGACA GAGTAAAATG TGTTAAGGAT GAAAAAGGCA
ACATGCGCCT ATGGAATAAA ATATCATTGA ATGATGTATT AGAAATTAAA TGGGATGAGC TTACTGAACA TATCCTATAG
TTGATGCCAC ATGCATGATT TTTGCATATG ATATAGTCCT AGTTGGAGAT TTTAGAGAGA AATTAAATGG GATAGAGTGT
AGACTAGCTT TGGAAACTTG TGGCTTCGAT TTAAGCAGGG ATTAAAAGAG TGTATGAAAT GTAAGGCTAG CTAGAGGCAC
ATCTTTCCTA CCTTAGAGGT GAGAACTTGG AGAACATATG TTATTATTTC CAGTCGCATG GTTTAAGTAT TATGGATTCA
TCATACACAA AGAATGGAGA AGTGGTGGGC GATGTCAACC ATGGTATTCA AGTAGGGTGG ATAAAATGGA TGAGTGCCTC
AGGTGTTCTT TGTTACGAAA AGGTATTCAA ACTAAAAGAA AAATTTCCTA CACGACTATA AGCTCAATGA AGGTGAGATG
TACGCAGGTG ATCAGAAATC AATAAAAAAA TAAGCTCAAT GTATTTGAGA TGAGAATTTG ACGGTGGATA TTTTTAACAT
ACTAGAGACG ATATAGGATT TGGAAGGAAT GAATTAGAGA GAGATTTGGG ATAGCACCTG TGGTAGAAAA TCTATTAGAA
TATCCCTCAG GTGGTTTTTA CATGGACAGA GAAGACCTGT GGAATCGTTA CCATGAAAAG TATATTAGAT GGAGGGTAGC
CCTATGATTA GAAATAGAAG GAGACCCAGA AAAGTTGTAG GGAAAACCAT TGAAACTGAC TCGAGTTCGA TTCTTTGTGT
ATAGATATGA TTCACAATAG AACATTATGG TGTCGTTTGA TATCATCTAA CTGAATACCC GCCCCCTTAC CTCCCTAGTG
GGTCTTTGTT TATTGTTGTA AGCTTGGCTC TGACGAGTCT AAAGATTTTA ATTTGTGATC CATTTATGGC CAAGCCCAGT
TTTTTATGTC GCTATGTCAA GGTTTAATGT ACAATTTCTT TTGTGCAGGT GTTCCGTGGA CTGAGGAGGA ACATAGAATG
TTTTTACTCG GATTGCAGAA GCTGGGCAAA GGTGATTGGC GTGGAATTGC AAGGAACTAT GTTATATCAA GGACACCTAC
TCAAGTGGCT AGTCATGCAC AAAAGTATTT CATCAGGCAA AGCAATGTGT CCAGGCGGAA AAGACGGTCC AGCTTGTTTG
ATATTGTTGC AGATGAAGTT TGTACCCTTA TTCATCAAAA TGCATACCTA GAAATTGATG CTGCATAATC TGTTCATTAC
TTCATGGGCA TATATTAGAT TATCCAAATA TGTTTCTTTC TTTGTAGATG GTTTGATGTG TTCTGGCTCC TGTGACAAAT
AAGTTAGTTA AACTCAAACT ATATATTGAT GTCTGTAATG TATGAAAAAT TCTCATTTCC TTTCTTCTGC TGTGGATTTG
ACAAATTTGG ATCTTGACTA GCTTACGTGT ATTGATTATC AAGCTCTGCT TAGATTATAT TTCAAAACAT TGCCCTTGAG
TAGTTTAGAG ATAAACATTG CATTTTCTCA TGGATGCTTT TACAAATTCT GGTATTGGAA ATCTGTAATT TCCCTTTGTC
CTTGGACACT TCTAATTTTT CTAGGTTTCT TGTATTTTTT TGTTGTGATT TTGCAGGCAG CTGACACTGC AATGGTACAG
CAAGACTTCT TGTCAGCTAA TCAGTTACCG GTTGAAACAG AAGGCAATAA CTCCTTGCCT GCGCCTCCTC CCCTCGACGA
AGAGTGTGAA TCCATGGATT CCACAAACTC AAATGATGGA GAACCTGCCC CATCAAAGCC TGAAAACACA CAATCATCTT
ATCCAGTTTT ATATCCTGCA TACTATTCTC CAGTGTTCCC ATTTCCTCTG CCCTATTGGT CAGGATACAA TCCAGAGCCC
GCCAAGATGG AGACGCATGA AGTGCTGAAG CCAACTGCAG TACATTCTAA AAGCCCAATC AATGTTGATG AACTGGTTGG
CATCTCAAAA CTGAGTCTAG GGGAGTCTAT TGGTGATTCA GGCCCCTCCT CCCTGTCTCT TAAACTTCTT GAAGAAGGAC
CCTCGAGACA GTCAGCTTTC CATGCAACAC CAACATGTGG TAGTTCAAAT ATGAATGGCA GTGCCATCCA TGCAGTTTAA
GGGTGTTCCT CGTCTTCCGA GGAAAGGATT GTTATGTAAG CATTACCGTT CAATGCCGGC CTCATGAATG TGGTCTTGTG
TTCATCATAC ATCTGTTTGT GGGGTAACTT AAATAATTTT TTCTTTGTCC ATTCACAATG ATTAACCTAG TTTCTTTATT
TGCTGATAGG CAGGTCTAGG AGTTACTTGG GTTCTAAACT AAAACTTTAT GTTTGTTTAG TGATTTCATT TGTCAGGGTT
ATGTAAAGTT AAGGTTTGAT TGTGCAGTTT GACAATGTAC CAAGTTGTGC TAAATGTTTT CAAGTGCTGG ATTAGAATGT
TTGAAGTGCT TTACCTGATC AAACCGGTCT CTCCTGAATT AACAGAGTGA GACAGAAAAT GAAGAGCACA AATTGTAGTT
ACTTGGTAGG GCTTGAAATG GGTTGAGATA AGTTAAACTC ACTTTGAATA AGCTTATTTG TTCCTTAAAT ATAAATTATC
TAATGCATGA CTCTGGTCTA TTTGATATGG GTTGTCTAAC TTACTAAAAA GTGGGGTCAA ATAACTAAAT CATACTGGTG

>Vigan.01G374800.01
TGCGAAAGCC GAGGGAGACC GTAACAAAAA ACATTACATA ACCCAAAACA AACACATCAC AATACCTATT CCCTCTTACC
ACACCTAAAT AACCTTAAAA CTCCCATTTC ATGTCTCGGA TCCCGTGATT CGGATCCCCC AAGACCCGCT CCCACAATCT
CGTACTTTCC TTTCGGCCGA TCCGGTTGGG AACGCGCCAT GACCCGACGT TGCTCCCATT GCAGCCACAA TGGGCACAAT
TCCAGGACCT GCCCCAATCG TGGAGTTAAG CTGTTCGGAG TCCGATTAAC CGACGGGTCG ATCCGGAAGA GTGCTAGTAT
GGGTAATCTC ACCCATTATG CTGGTTCCGG GTCCGGACCT CTCCATGCGG GGTCAAACAA TCCGGGTTCT CCTGGTGAAA
CCCCCGATCA CGCTACCGCG GCCGATGGTT ACGCCTCCGA GGACTTTGTT CCCGGTTCTT CTTCGAGCTC CCGTGAAAGA
AAGAAGGGTG TTCCGTGGAC TGAGGAGGAA CATAGAATGT TTTTACTCGG ATTGCAGAAG CTGGGCAAAG GTGATTGGCG
TGGAATTGCA AGGAACTATG TTATATCAAG GACACCTACT CAAGTGGCTA GTCATGCACA AAAGTATTTC ATCAGGCAAA
GCAATGTGTC CAGGCGGAAA AGACGGTCCA GCTTGTTTGA TATTGTTGCA GATGAAGCAG CTGACACTGC AATGGTACAG
CAAGACTTCT TGTCAGCTAA TCAGTTACCG GTTGAAACAG AAGGCAATAA CTCCTTGCCT GCGCCTCCTC CCCTCGACGA
AGAGTGTGAA TCCATGGATT CCACAAACTC AAATGATGGA GAACCTGCCC CATCAAAGCC TGAAAACACA CAATCATCTT
ATCCAGTTTT ATATCCTGCA TACTATTCTC CAGTGTTCCC ATTTCCTCTG CCCTATTGGT CAGGATACAA TCCAGAGCCC
GCCAAGATGG AGACGCATGA AGTGCTGAAG CCAACTGCAG TACATTCTAA AAGCCCAATC AATGTTGATG AACTGGTTGG
CATCTCAAAA CTGAGTCTAG GGGAGTCTAT TGGTGATTCA GGCCCCTCCT CCCTGTCTCT TAAACTTCTT GAAGAAGGAC
CCTCGAGACA GTCAGCTTTC CATGCAACAC CAACATGTGG TAGTTCAAAT ATGAATGGCA GTGCCATCCA TGCAGTTTAA
GGGTGTTCCT CGTCTTCCGA GGAAAGGATT GTTATGTAAG CATTACCGTT CAATGCCGGC CTCATGAATG TGGTCTTGTG
TTCATCATAC ATCTGTTTGT GGGGTAACTT AAATAATTTT TTCTTTGTCC ATTCACAATG ATTAACCTAG TTTCTTTATT
TGCTGATAGG CAGGTCTAGG AGTTACTTGG GTTCTAAACT AAAACTTTAT GTTTGTTTAG TGATTTCATT TGTCAGGGTT
ATGTAAAGTT AAGGTTTGAT TGTGCAGTTT GACAATGTAC CAAGTTGTGC TAAATGTTTT CAAGTGCTGG ATTAGAATGT
TTGAAGTGCT TTACCTGATC AAACCGGTCT CTCCTGAATT AACAGAGTGA GACAGAAAAT GAAGAGCACA AATTGTAGTT
ACTTGGTAGG GCTTGAAATG GGTTGAGATA AGTTAAACTC ACTTTGAATA AGCTTATTTG TTCCTTAAAT ATAAATTATC
TAATGCATGA CTCTGGTCTA TTTGATATGG GTTGTCTAAC TTACTAAAAA GTGGGGTCAA ATAACTAAAT CATACTGGTG

>Vigan.01G374800.01
ATGACCCGAC GTTGCTCCCA TTGCAGCCAC AATGGGCACA ATTCCAGGAC CTGCCCCAAT CGTGGAGTTA AGCTGTTCGG
AGTCCGATTA ACCGACGGGT CGATCCGGAA GAGTGCTAGT ATGGGTAATC TCACCCATTA TGCTGGTTCC GGGTCCGGAC
CTCTCCATGC GGGGTCAAAC AATCCGGGTT CTCCTGGTGA AACCCCCGAT CACGCTACCG CGGCCGATGG TTACGCCTCC
GAGGACTTTG TTCCCGGTTC TTCTTCGAGC TCCCGTGAAA GAAAGAAGGG TGTTCCGTGG ACTGAGGAGG AACATAGAAT
GTTTTTACTC GGATTGCAGA AGCTGGGCAA AGGTGATTGG CGTGGAATTG CAAGGAACTA TGTTATATCA AGGACACCTA
CTCAAGTGGC TAGTCATGCA CAAAAGTATT TCATCAGGCA AAGCAATGTG TCCAGGCGGA AAAGACGGTC CAGCTTGTTT
GATATTGTTG CAGATGAAGC AGCTGACACT GCAATGGTAC AGCAAGACTT CTTGTCAGCT AATCAGTTAC CGGTTGAAAC
AGAAGGCAAT AACTCCTTGC CTGCGCCTCC TCCCCTCGAC GAAGAGTGTG AATCCATGGA TTCCACAAAC TCAAATGATG
GAGAACCTGC CCCATCAAAG CCTGAAAACA CACAATCATC TTATCCAGTT TTATATCCTG CATACTATTC TCCAGTGTTC
CCATTTCCTC TGCCCTATTG GTCAGGATAC AATCCAGAGC CCGCCAAGAT GGAGACGCAT GAAGTGCTGA AGCCAACTGC
AGTACATTCT AAAAGCCCAA TCAATGTTGA TGAACTGGTT GGCATCTCAA AACTGAGTCT AGGGGAGTCT ATTGGTGATT
CAGGCCCCTC CTCCCTGTCT CTTAAACTTC TTGAAGAAGG ACCCTCGAGA CAGTCAGCTT TCCATGCAAC ACCAACATGT
GGTAGTTCAA ATATGAATGG CAGTGCCATC CATGCAGTTT AA

>Vigan.01G374800.01
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLTHYAGS GSGPLHAGSN NPGSPGETPD HATAADGYAS
EDFVPGSSSS SRERKKGVPW TEEEHRMFLL GLQKLGKGDW RGIARNYVIS RTPTQVASHA QKYFIRQSNV SRRKRRSSLF
DIVADEAADT AMVQQDFLSA NQLPVETEGN NSLPAPPPLD EECESMDSTN SNDGEPAPSK PENTQSSYPV LYPAYYSPVF
PFPLPYWSGY NPEPAKMETH EVLKPTAVHS KSPINVDELV GISKLSLGES IGDSGPSSLS LKLLEEGPSR QSAFHATPTC
GSSNMNGSAI HAV*